BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53900.2
Length=1184
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323928 jgi|Araly1|323928|fgenesh1_pm.C_scaffold_5001472 1426 0.0
> Ahg323928 jgi|Araly1|323928|fgenesh1_pm.C_scaffold_5001472
Length=888
Score = 1426 bits (772), Expect = 0.0
Identities = 852/891 (96%), Gaps = 3/891 (0%)
Strand=Plus/Plus
Query 36 ATGGCGTGCTCAATTGGTAACGCTTTCAGGTGTTCTTCTGATACGCTGCGTTTTGCTCCC 95
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATGGAGTGCTCAATTGGTAACACTTTCAGGTGTTCTTCTGATACGCTGCGTTTTGGTCCC 60
Query 96 CGACAACAATGCAGCAGCCGCCTAAACCCTAATCCTTCCTCTTTCCTCTCCTTTAATTCC 155
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGACAACAAT---GCAGCCGCCTAAACCCTAATCCTTCCTCTTTCCTCTCCTTTAATTCC 117
Query 156 TCCCCAATTCTCGCACAGAATTTGGGTGCTTCTTCTTCGTCACTTTCCCGACGGACTATA 215
|||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||
Sbjct 118 TCCCCAATTCTCGCACAGAATTTGAGTGCTTCTTCTTCGTCTGTTTCCCGGCGGACTATT 177
Query 216 CGAGCTAGAACAAAAATGGCTGCGTCGGAGGCTTCCATTAACGGGAGCAACAGGATGCTG 275
|||| |||| |||||||||| ||||| |||| ||| |||||||| ||||| |||||||||
Sbjct 178 CGAGTTAGAGCAAAAATGGCGGCGTCAGAGGGTTCGATTAACGGAAGCAATAGGATGCTG 237
Query 276 GTCTTTGTGCCACCACATCCTTTGATCAAACACTGGATCTCTGTTCTGAGAAATGAACAA 335
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 238 GTGTTTGTGCCACCACATCCTTTGATCAAACACTGGATCTCTGTTCTCAGAAATGACCAA 297
Query 336 ACTCCTTGTCCTGTTTTCAGGAATGCAATAGCTGAACTAGGGAGATTACTCATGTATGAA 395
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 298 ACTCCTTGTCCTATTTTCAGGAATGCAATAGCTGAACTAGGGAGACTACTCATGTATGAA 357
Query 396 GCATCACGAGAGTGGCTGCCAACTGTTGTGGGTGAAATAATGTCTCCAATGGGTCCTGCT 455
||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 358 GCAGCACGAGAGTGGCTGCCAACTGTTGTGGGAGAAATAATGTCTCCTATGGGTCCTGCT 417
Query 456 TCTGTTGAATTCATTGATCCTAGAGAGCCTATTGCGGTTGTTCCGATATTAAGAGCTGGT 515
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 418 TCTGTTGAATTCATTGATCCTAGAGAGCCTATAGCGGTTGTTCCGATTTTAAGAGCTGGT 477
Query 516 CTTGCTCTTGCGGAACACGCATCCTCAGTTTTACCTGCTAATAAAATTTATCATTTAGGA 575
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 478 CTTGCTCTTGCGGAACACGCATCCTCAGTTTTGCCTGCAAATAAAATTTATCATTTAGGA 537
Query 576 GTAAGTAGAGATGAGAAAACACTTTTACCATCGGTGTATCTTAACAAGTTGCCTGATGAA 635
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 538 GTAAGTAGGGATGAGAAAACACTTTTGCCGTCGGTGTATCTTAACAAGTTGCCTGATGAA 597
Query 636 TTTCCCAAGAATTCAAGAGTATTTTTGGTCGACCCAGTGCTTGCCACAGGTGGTACCATA 695
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 598 TTTCCCAAGAATTCAAGAGTATTTTTGGTCGATCCAGTGCTTGCCACAGGTGGTACCATA 657
Query 696 ATGGCGGCGATGGATCTATTGAAGGAACGTGGTTTGTCTGTTCAGCAAATCAAAGTGATT 755
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 658 ATGGCGGCGATGGATCTATTGAAGGAACGTGGTTTGTCTGTGCAGCAAATCAAAGTGATT 717
Query 756 TGTGCGATTGCTGCACCTCCTGCACTATCGAAGCTTAACGAGAAATTCCCCGGGCTTCAT 815
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 718 TGTGCGATTGCTGCACCTCCTGCACTATCGAAGCTGAATGAGAAATTCCCCGGGCTTCAT 777
Query 816 GTATATGCTGGAATTATTGATCCTGAAGTCAATGAAAAGGGGTACATAATCCCTGGGCTT 875
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GTATATGCTGGAATTATCGATCCTGAAGTCAATGAAAAGGGGTACATAATCCCTGGGCTT 837
Query 876 GGAGACGCTGGAGACCGCAGTTTCGGGACAGAAACACATTGGGTGAAGTGA 926
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GGAGACGCTGGAGACCGCAGTTTCGGGACAGAAACACATTGGGTGAAGTGA 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44184460803
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5