BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53930.2
Length=2561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323930 jgi|Araly1|323930|fgenesh1_pm.C_scaffold_5001474 3465 0.0
Ahg482789 jgi|Araly1|482789|fgenesh2_kg.4__1849__AT2G37840.1 1469 0.0
Ahg356474 jgi|Araly1|356474|fgenesh1_pg.C_scaffold_8000261 261 2e-68
> Ahg323930 jgi|Araly1|323930|fgenesh1_pm.C_scaffold_5001474
Length=2136
Score = 3465 bits (1876), Expect = 0.0
Identities = 2053/2140 (96%), Gaps = 5/2140 (0%)
Strand=Plus/Plus
Query 190 ATGGCTCAGTCGTCGTTGGTGGCGGCGGCGGGGAGAAGCGGAAGGGTTATCGGCGATTAT 249
||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGGCTCAGTCGTCG-T--TGGCGGCGGCGGGGGGAAGCGGAAGGGTTATCGGCGATTAC 57
Query 250 GCGGTGGGTCGACAAATCGGGTCGGGGTCGTTTTCCGTGGTTTGGGAAGGGAGGCATCTT 309
|| ||||||||||||||||||||||| ||||| || || |||||||||||||||||||||
Sbjct 58 GCCGTGGGTCGACAAATCGGGTCGGGTTCGTTCTCGGTTGTTTGGGAAGGGAGGCATCTT 117
Query 310 GTTCATGGCACCGTCGTTGCTATCAAGGAGATCGCTATGGCTCGGCTTAATAAGAAGTTG 369
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 118 GTTCATGGCACCGTCGTTGCTATCAAGGAGATCGCTATGGCTCGACTTAATAAGAAGTTG 177
Query 370 CAAGAGAGTCTCATGTCGGAGATTATCATCTTAAGGAAGATTAATCATCCTAACATCATT 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CAAGAGAGTCTCATGTCGGAGATTATCATCTTAAGGAAGATTAATCATCCTAACATCATT 237
Query 430 CGCTTTATCGACATGATCGAGGCTCCCGGGAAGATAAATTTGGTGTTGGAGTACTGTAAA 489
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 238 CGCTTTATCGACATGATCGAGGCTCCTGGGAAGATAAATTTGGTGTTGGAGTACTGCAAA 297
Query 490 GGTGGTGATCTGTCTATGTATATTCACAAACATGGAAGTGTTCCTGAAGCTACTGCTAAG 549
|| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 298 GGGGGTGATCTGTCTATGTATATTCATAGTCATGGAAGTGTTCCTGAAGCTACTGCTAAG 357
Query 550 CATTTTATGCTGCAGTTAGCGGCTGGCTTACAAGTTCTTCGTGACAATAATATCATTCAC 609
|||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 358 CATTTTATGCAGCAGTTAGCGGCTGGCTTACAAGTTCTTCGTGAGAATAATATTATTCAC 417
Query 610 CGCGATTTAAAGCCTCAGAATCTTCTTCTATCCACAGATGATAATGATGCAGCTCTGAAG 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CGCGATTTAAAGCCTCAGAATCTTCTTCTATCCACAGATGATAATGATGCAGCTCTGAAG 477
Query 670 ATTGCCGATTTTGGATTTGCAAGATCGTTGCAGCCTAGGGGTTTGGCAGAAACTTTATGT 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ATTGCCGATTTTGGATTTGCAAGATCGTTGCAGCCTAGGGGTTTGGCAGAAACTTTATGT 537
Query 730 GGTTCACCACTGTATATGGCCCCAGAGATTATGCAGCTTCAAAAATATGATGCAAAGGCA 789
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 538 GGTTCACCACTGTATATGGCCCCAGAGATTATGCAGCTCCAAAAATATGATGCAAAGGCA 597
Query 790 GATCTCTGGAGTGTTGGTGCTATATTATTTCAACTTGTGACAGGCAGAACCCCTTTTACA 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GATCTCTGGAGTGTTGGTGCTATATTATTTCAACTTGTGACAGGCAGAACCCCTTTTACA 657
Query 850 GGAAACAGCCAAATTCAGTTGCTCCAGAACATTATAAGATCAACTGAATTACATTTTCCA 909
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 658 GGAAACAGCCAAATTCAGTTGCTCCAGAACATAATAAGATCAACTGAATTACATTTTCCA 717
Query 910 GCAGACTGTAGAGATTTGAGTACCGACTGTAAAGATCTATGCCAGAAGCTACTGCGTCGT 969
|| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct 718 GCCGACTGTAGAGATTTGAGTACCAATTGTAGAGATCTATGCCAGAAGCTACTGCGTCGT 777
Query 970 AATCCAGTGGAACGTTTGACGTTTGAAGAGTTTTTTCATCATCCTTTCCTTTCAGACAAA 1029
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 778 AATCCAGTGGAACGTTTGACGTTTGAAGAGTTTTTTCATCATCCTTTTCTTTCAGACAAA 837
Query 1030 CAATCATATGATTTCACAAGGAGTAGATTAGATTCACGAACTATGAACGATTTTCATTCA 1089
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 838 CAATCATATGATTTCACAAGGAGTAGATTAGATTCACGAACGATGAGCGATTTTCATTCA 897
Query 1090 TCAGGAAGCAGTCCCTCAAGAAATATAGAAGAAATTTCTCAAGAAGACGGGTTGCCGTTC 1149
|| ||||||||||||||||||||||| |||||||| |||||||||||| | ||||| ||
Sbjct 898 TCTGGAAGCAGTCCCTCAAGAAATATGGAAGAAATGTCTCAAGAAGACTGTTTGCCATTT 957
Query 1150 TTTTTAGATGATGATTCTAGTGGACCTGAGGGAAGCCCTTCATCTTTTAAACATACTTCC 1209
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 958 TTTTTAGATGATGATTCTAGTGGACCTGAGGGAAGCCCTTCATATTTTAAACATACTTCC 1017
Query 1210 CCGATGAAGTCATCTTACGGATTTAGTGTTGAAAGAAGGGAGGCAGCAT-TAAGTCCTTT 1268
|| || ||||||||||||||||||| ||||||||||| |||||||| | || |||||||
Sbjct 1018 CCAATAAAGTCATCTTACGGATTTAACGTTGAAAGAAGAGAGGCAGCTTCTA-GTCCTTT 1076
Query 1269 GAAAAACATGGATCTTTCTTCCAGATATAGTAGAGTCAGTCATAGAGCAGAAACCAATAA 1328
|||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1077 GAAAAACATGGAACTTACTTCCGGATATAGTAGAGTCAGTCATAGAGCAGAAACCAATAA 1136
Query 1329 TTTCAAGTTTGAGGGCCATAGATTATCAGATAGAAGCCAATTCAAACCGTCAAGCTTACC 1388
|| |||||| || |||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1137 TTCCAAGTTGGAAGGCCATAGATTATCAGATAGAAACCAATTCAAACCGTCAAGCTTGCC 1196
Query 1389 TGATTCCAGATCATTTAGTACCCAAGGAAGAGTAGGGGATTCTCCAGACTCAATGGATCA 1448
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GGATTCCAGATCACTTAGTACTCAAGGAAGAGTAGGGGATTCTCCAGACTCAATGGATCA 1256
Query 1449 AGATTATGTTCTGATATCTGGACCACCGGTTGATATACCATCATCTTCATCTGGTTCTCC 1508
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1257 AGACTATGTTCTGATATCTGGACCACCGGTTGATATACCATCATCTTCATTTGGTTCTCC 1316
Query 1509 GAAGCCTTTCAATTACCCATTCAAATCACATTCTCCTCCTGTAGAGTTCATCAAGAGAAA 1568
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1317 GAAGCCTTTCAATTACCCATTCAAATCACATTCTCCTCCTGTAGAGTTCAGCAAGAGAAA 1376
Query 1569 TGTAACTAATTTAACGGCTCCTATGCCAATAGCTAGTGCTACTGGCAACAACCTTAGTCG 1628
|||||||| ||||||||||||||||| ||||||| |||| |||||||||||| |||||||
Sbjct 1377 TGTAACTACTTTAACGGCTCCTATGCAAATAGCTGGTGCCACTGGCAACAACATTAGTCG 1436
Query 1629 ATTTGGAAGCTTGGAGAGTCAGAATTGTATCCCGGGTACTTCCCATGGGTCTCTGGATCT 1688
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||
Sbjct 1437 ATTTGGAAGCTTGGAGAGTCAGAATTATATCCCGGGTACTTCTCATGGGTCTCTAGATCT 1496
Query 1689 TGTAGATGCTTTTGAACAGCCATCAACTAACAGCTTGACAAGAATCCGGTCTTTGCAAAA 1748
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1497 TGTGGATGCTTTTGAACAGCCATCAACTAACAGCTTGACAAGAATTCGGTCTTTGCAAAA 1556
Query 1749 GTGTGCAGCTGCAATAGCAGAATTGGTTCATGAAAGGGGTGAAAATGGTAAGCATTTAGA 1808
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1557 GTGTGCAGCAGCAATAGCAGAATTGGTTCATGAAAGAGGTGAAAATGGTAAGCATTTAGA 1616
Query 1809 AGCTTTCTCGATCCAACTGGTGATTCTTGCAATTTGGAATCAAGCACTACACATCTGTCA 1868
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1617 AGCTTTCTCGATCCAACTGGTGATTCTTGCAATTTGGAATCAAGCACTGCACATCTGTCA 1676
Query 1869 TACTCAGGCAGTCTCGGGTATAGAAGGAAGCCTGCTCCAAGACATTAACAGAGTAGGAAG 1928
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1677 TACTCAGGCAGTCTCGGGTATAGAAGGAAGCCTGCGCCAAGACATTAACAGAGTAAGAAG 1736
Query 1929 AAATATCAGCCACGGAGGATCAGAGAAGTTATTGCCTCAGATTCAGAAAGAATTTGTCCA 1988
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1737 AAATATCAGCCACGAAGGATCAGAGAAGTTATTGTCTCAGATTCAGAAAGAATTTGTCCA 1796
Query 1989 GGAAGTGGAGCGTGCTGAAGAACTTGCCAAGTTTGTTGAATCTGATAATGCAAAGATGCC 2048
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1797 GGAAGTTGAGCGTGCTGAAGAACTTGCCAAGTTTGTTGAATCTGATAATACAAAGATGCC 1856
Query 2049 GGATGCAATGGAGATGATACTTCAAGCAGCTCTTGCTCTTGGCATAAGTGGAGGAGTAGA 2108
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 GGATGCAATGGAGATAATACTTCAAGCAGCTCTTGCTCTTGGCATAAGTGGAGGAGTAGA 1916
Query 2109 TGAAGTGATGGGAGACGCAGAGAACGCAGGAAACCTCTACTCAAAAGCGGTGCGTTTGTT 2168
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1917 TGAAGTGATGGGAGACGCAGAGAACGCAGGAAACCTCTACTCAAAAGCGGTGCGTTTGCT 1976
Query 2169 AGTCTTCCTTGCAGTGGAGGCGCAGACGCTGATTCTCAATCCACCTTTAACACTCACAAA 2228
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1977 AGTCTTCCTTGTAGTGGAGGCACAGACGCTGATTCTCAATCCACCTTTAACACTCACAAA 2036
Query 2229 CTCAGTAAGGTATCGACTCAGAACATATATTGACTCACTCATAACCAGATTGAAACATCT 2288
||||||||||||||||||||||||||||||||| || |||||| ||||||| ||||||||
Sbjct 2037 CTCAGTAAGGTATCGACTCAGAACATATATTGATTCCCTCATAGCCAGATTAAAACATCT 2096
Query 2289 GCAATCACATAGAAGAACTTCATATCCTCAGAAGCAATGA 2328
|||||||||||||||||||||||||||||||||||||||
Sbjct 2097 TCAATCACATAGAAGAACTTCATATCCTCAGAAGCAATGA 2136
> Ahg482789 jgi|Araly1|482789|fgenesh2_kg.4__1849__AT2G37840.1
Length=2565
Score = 1469 bits (795), Expect = 0.0
Identities = 1422/1718 (83%), Gaps = 70/1718 (4%)
Strand=Plus/Plus
Query 252 GGTGGGTCGACAAATCGGGTCGGGGTCGTTTTCCGTGGTTTGGGAAGGGAGGCATCTTGT 311
||||||||| |||||||||||||| ||||| || || |||||||||| |||||| | ||
Sbjct 187 GGTGGGTCGTCAAATCGGGTCGGGTTCGTTCTCTGTTGTTTGGGAAGCGAGGCACCGCGT 246
Query 312 TCATGGCACCGTCGTTGCTATCAAGGAGATCGCTATGGCTC-GGCTTAATAAGAAGTTGC 370
| | || || | ||||||||||| |||||||| |||| | ||||||| |||||| |||
Sbjct 247 TGACGGTACTGAGGTTGCTATCAAAGAGATCGCCATGG-ACAGGCTTAACAAGAAGCTGC 305
Query 371 AAGAGAGTCTCATGTCGGAGATTATCATCTTAAGGAAGATTAATCATCCTAACATCATTC 430
| || ||||||||||| |||||| | ||||| |||| ||| ||||||||||||||||| |
Sbjct 306 AGGAAAGTCTCATGTCTGAGATTTTTATCTTGAGGAGGATCAATCATCCTAACATCATCC 365
Query 431 GCT-TTATCGACATGATCGAGGCTCCCGGG-AAGATAAATTTGGTGTTGGAGTACTGTAA 488
| | | |||||||||||| || |||| ||| ||| || ||||||||||||||||||| ||
Sbjct 366 G-TATGATCGACATGATCAAGTCTCCTGGGAAAG-TACATTTGGTGTTGGAGTACTGCAA 423
Query 489 AGGTGGTGATCTGTCTATGTATATTCACAA-ACATGGAAGTGTTCCTGAAGCTACTGCTA 547
||| |||||| ||||| ||||| | || || |||||| | ||| ||||||||||||||||
Sbjct 424 AGGAGGTGATTTGTCTGTGTATGTCCA-AAGACATGGGATTGTCCCTGAAGCTACTGCTA 482
Query 548 AGCATTTTATGCTGCAGTTAGCGGCTGGCTTACAAGTTCTTCGTGACAATAATATCATTC 607
||||||| |||| |||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 483 AGCATTTCATGCAGCAGTTAGCGGCCGGCTTACAAGTTCTTCGTGACAATAATATTATTC 542
Query 608 ACCGCGATTTAAAGCCTCAGAATCTTCTTCTATCCACAGATGATAATGATGCAGCTCTGA 667
|||| ||||| |||||||||||||||||||||||||||||||| || ||||||| ||||
Sbjct 543 ACCGAGATTTGAAGCCTCAGAATCTTCTTCTATCCACAGATGAAAACGATGCAGATCTGG 602
Query 668 AGATTGCCGATTTTGGATTTGCAAGATCGTTGCAGCCTA-GGGGTTTGGCAGAAACTTTA 726
||||||| |||||||||||||||||||||||||| |||| |||| || ||||| ||||||
Sbjct 603 AGATTGCTGATTTTGGATTTGCAAGATCGTTGCAACCTAGGGGGCTT-GCAGAGACTTTA 661
Query 727 TGTGGTTCACCACTGTATATGGCCCCAGAGATTATGCAGCTTCAAAAATATGATGCAAAG 786
|| ||||||||| ||||||||||||||||||| ||||| ||||| || ||||||||||||
Sbjct 662 TGCGGTTCACCATTGTATATGGCCCCAGAGATCATGCAACTTCAGAAGTATGATGCAAAG 721
Query 787 GCAGATCTCTGGAGTGTTGGTGCTATATTATTTCAACTTGTGACAGGCAGAACCCCTTTT 846
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 722 GCAGATCTCTGGAGTGTTGGTGCTATTTTATTTCAACTTGTGACAGGCAGAACCCCTTTT 781
Query 847 ACAGGAAACAGCCAAATTCAGTTGCTCCAGAACATTATAAGATCAACTGAATTACATTTT 906
||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||
Sbjct 782 ACAGGAAACAGCCAAATTCAGTTGCTCCAAAACATTATAAGATCAACCGGATTACATTTT 841
Query 907 CCAGCAGACTGTAGAGATTTGAGTACCGACTGTAAAGATCTATGCCAGAAGCTACTGCGT 966
|||| ||||| |||||||| ||| ||||||| |||||| || |||||| |||||||
Sbjct 842 CCAGGGGACTGCAGAGATTTAAGTTTGGACTGTATAGATCTGTGTCAGAAGTTACTGCGC 901
Query 967 CGTAATCCAGTGGAACGTTTGACGTTTGAAGAGTTTTTTCATCATCCTTTCCTTTCAGAC 1026
||||||||||||||||||||||| ||||||||||| ||| |||| ||||||||||| |||
Sbjct 902 CGTAATCCAGTGGAACGTTTGACATTTGAAGAGTTCTTTAATCACCCTTTCCTTTCGGAC 961
Query 1027 AAACAATCATATGATTTCACAAGGAGTAGATTAGA-TTCACGAACTATGAACGATTTTCA 1085
| || |||||||||||| ||||||||||||| | || | |||| ||| ||| |||||
Sbjct 962 AGGCAGTCATATGATTTCTCAAGGAGTAGATTGGGCTTAA-GAACAATGGACGGTTTTCT 1020
Query 1086 TTCATCAGGAAGCAGTCCCTCAAGAAATATAGAAGAAATTTCTCAAGAAGACGGGTTGCC 1145
||| || || ||||||||||| ||||| || ||||||| ||||||||||||| | |||||
Sbjct 1021 TTCGTCTGGGAGCAGTCCCTCGAGAAACATGGAAGAAAGTTCTCAAGAAGACTGTTTGCC 1080
Query 1146 GTTCTTTTTAGATGATGATTCTAGTGGACCTGAGGGAAGCCCTTCATCTTTTAAACATAC 1205
||| || |||||||||||||||||||||||||||| |||||||||| ||| ||| | ||
Sbjct 1081 ATTCCTTCTAGATGATGATTCTAGTGGACCTGAGGGGAGCCCTTCATATTTGAAAAAGAC 1140
Query 1206 TTCCCCGATGAAGTCATCTTAC-GGATTTA--GT-GTTG--A-AA--GA-AG---GGAGG 1252
||| | |||||||| || | | ||||||| || | | | || || || |||||
Sbjct 1141 ATCCTCAATGAAGTCGTCCT-CTGGATTTAAAGTCGATACCAGAATTGAGAGAAAGGAGG 1199
Query 1253 CAGCAT-TAAGTCCTTTGAAA-A-ACATGGATCTTTCTTCCAGA-TATAGTAGAGTCAGT 1308
| | || || ||||||| ||| | ||| | | ||| |||| || |||||||| ||| |
Sbjct 1200 CGGAATCTA-GTCCTTTAAAATATACA-GAA-CTTACTTCT-GAATATAGTAGTGTC-GA 1254
Query 1309 C-ATAGAGCAGAAACCAATA-ATTTCAAGTTTGAGGGC-CA--TAGATTATCAGATAGAA 1363
| | | || |||| ||||| |||| | |||||| | || || ||| | ||||| |
Sbjct 1255 CCAAAAAGTGGAAAACAATAGATTT-AGGTTTGAAA-CTCAAATAAATT--CGGATAGGA 1310
Query 1364 GCCAATT-CA---AACCGTCAAGCTT-ACCTGATTCCAGATCATTTAGTAC-CCAAGGAA 1417
| || || |||| || | || || ||||||||||||| ||| | | ||| |||
Sbjct 1311 GA-AACCGCAGGGAACCAACAGGATTGAC-TGATTCCAGATCACTTATTGCTCCA-GGAG 1367
Query 1418 GAGTAGGGGATTCTCCAGACTCAATGGATCAAGATTAT-GTTCT-GATATCTGGACCACC 1475
|||||| ||||||| |||||| ||||||||||||| | ||||| | |||||||||||||
Sbjct 1368 GAGTAGATGATTCTCAAGACTCCATGGATCAAGATT-TCGTTCTCG-TATCTGGACCACC 1425
Query 1476 GGTTGATATACCATCATCTTCATCTGGTTCTCCGAAGCCTT-TCAATTACCCATTCAAAT 1534
|| ||||| |||||||||||||| ||||| ||||||||| | |||| |||||||| |
Sbjct 1426 AGTGGATATGCCATCATCTTCATCAAGTTCTTCGAAGCCTTAT-AATTTTCCATTCAAGT 1484
Query 1535 CACATTCTCCTCCTGTAGAGTTCAT-CAAGAGAAATGTAACTAATTT-AACGGCTCCTAT 1592
| || ||||||||||||||||| || ||| |||| | | ||| || ||||||||| ||
Sbjct 1485 CTCAGTCTCCTCCTGTAGAGTT-ATTCAACAGAA--GCA--TAAGTTCAACGGCTCCCAT 1539
Query 1593 GCCAATAGCTAGTGCTACTGGCAACAACCTTAGTC-GATTTGGAAGCTTGGAGAGTCAGA 1651
||||||| | ||||||||||||||| | || ||| | ||||| ||| |||| |||||||
Sbjct 1540 GCCAATAATTGGTGCTACTGGCAACAGCATTGGTCAG-TTTGGGAGCCTGGACAGTCAGA 1598
Query 1652 ATTGTATCCCGGGTACTTCCCATGGGTCTCTGGATCTTGTAGATGCTTTTGAACAGCCAT 1711
| | | |||| | ||||| ||||||||||| ||||||| |||||||||||||||||||
Sbjct 1599 ACTCTGCCCCGAGCACTTCTCATGGGTCTCTAGATCTTGGGGATGCTTTTGAACAGCCAT 1658
Query 1712 CAACTAACAGCTTGACAAGAATCCGGTCTTTGC-AAAAGTGTGCAGCTGCAATAGCAGAA 1770
||||| ||||| ||||||||||| ||||| || |||| |||||||| | || ||||||
Sbjct 1659 CAACTCACAGCCTGACAAGAATCAGGTCTCTGAGAAAA-TGTGCAGCAACGATTGCAGAA 1717
Query 1771 TTGGTTCATGAAAGGGGTGAAAATGGTAAGCATTTAGAAGCTTTCTCGATCCAACTGGTG 1830
| |||||||||||| ||| || || ||| |||||||||||||||||||| ||| |
Sbjct 1718 CTAGTTCATGAAAGGATTGAGTCTGACAAACATCTAGAAGCTTTCTCGATCCAATTGGCG 1777
Query 1831 ATTCTTGCAATTTGGAATCAAGCACTACACATCTGTCATACTCAGGCAGTCTCGGGTATA 1890
||||| ||||||||||| || ||||| ||||| ||||||||||||||| | || ||| |
Sbjct 1778 ATTCTGGCAATTTGGAAGCAGGCACTGCACATATGTCATACTCAGGCAATTTCAGGTTTG 1837
Query 1891 GAAGGAAGCCTGCTCCAAGACATTAACAGAGTAGGAAG 1928
|||||||||| |||||||||||||| | || ||||
Sbjct 1838 GAAGGAAGCCCAAGCCAAGACATTAACAAACTAAGAAG 1875
> Ahg356474 jgi|Araly1|356474|fgenesh1_pg.C_scaffold_8000261
Length=972
Score = 261 bits (141), Expect = 2e-68
Identities = 238/284 (84%), Gaps = 10/284 (4%)
Strand=Plus/Plus
Query 1640 TGGAGAGTCAGAA-T-TGTATCCCGGGTACTTCCCATGGGTCTCTGGATCTTGTAGATGC 1697
|||| |||||||| | || | ||| | ||||| |||||||| |||||||||| |||||
Sbjct 269 TGGACAGTCAGAACTCTG-CT-CCGAGCACTTCTCATGGGTCGCTGGATCTTGGGGATGC 326
Query 1698 TTTTGAACAGCCATCAACTAACAGCTTGACAAGAATCCGGTCTTTGCAAAAGTGTGCAGC 1757
||||||||||||||||||||||||||||||||||||| | ||| || |||||||||||||
Sbjct 327 TTTTGAACAGCCATCAACTAACAGCTTGACAAGAATCAGTTCTCTGAAAAAGTGTGCAGC 386
Query 1758 TGCAATAGCAGAATTGGTTCATGAAAGGGGTGAAAA--TGGTAAGCATTTAGAAGCTTTC 1815
|||| |||||||| |||||||||| || | |||| || || || |||||||||||
Sbjct 387 AACAATTGCAGAATTAGTTCATGAAA-GGAT-AAAATCTGACAAACACCTAGAAGCTTTC 444
Query 1816 TCGATCCAACTGGTGATTCTTGCAATTTGGAATCAAGCACTACACATCTGTCATACTCAG 1875
||||||||||||| |||||| || |||||||| || ||||| ||||| || |||||||||
Sbjct 445 TCGATCCAACTGGCGATTCTGGCTATTTGGAAACAGGCACTGCACATATGCCATACTCAG 504
Query 1876 GCAGTCTCGGGTATAGAAGGAAGCCTG-CTCCAAGACATTAACA 1918
||| |||| ||| | |||||||||| ||| ||||||||||||
Sbjct 505 GCAATCTCAGGTTTGGAAGGAAGCCCAACTC-AAGACATTAACA 547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96558771075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5