BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G53940.1 Length=1542 Score E Sequences producing significant alignments: (Bits) Value Ahg485785 jgi|Araly1|485785|fgenesh2_kg.5__1777__AT3G53940.1 2145 0.0 Ahg321492 jgi|Araly1|321492|fgenesh1_pm.C_scaffold_4001549 536 2e-151 > Ahg485785 jgi|Araly1|485785|fgenesh2_kg.5__1777__AT3G53940.1 Length=1482 Score = 2145 bits (1161), Expect = 0.0 Identities = 1410/1521 (93%), Gaps = 53/1521 (3%) Strand=Plus/Plus Query 3 TTTACCAAAACACCCTTCTGCCTTCGCAGACCAGGTTTTAGGGGTTTCTCTAGGGTTTAC 62 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1 TTTACCAAAATACCCTTCTGCCTTCGCAGACCAGGTTTTAGGGGTTTCTTTAGGGTTTAC 60 Query 63 CTTCTCCACGACGATTTCTCCAATCTGACAATCTCCGATCACAAAAATTCAGAAACCCTT 122 |||||||||||||| || | | || |||||||||||||| | | ||| Sbjct 61 CTTCTCCACGACGA-TT-T-C--TC---CAATCTCCGATCAC----A---A-AAA----- 99 Query 123 TCCGCTTTAATTGATGCGAATTCAGCTTCCATC-TCCGCCGCATCAACCACAGAGTAATC 181 | ||||||||||||||||| |||| |||||| | ||||||| |||||||||||||||||| Sbjct 100 T-CGCTTTAATTGATGCGACTTCATCTTCCA-CATCCGCCGAATCAACCACAGAGTAATC 157 Query 182 TCACAGAGAGAAAGAGATTTGAATATGGAAGCTCGAGTCGGTGTAGTGGTGGAAGGAGGA 241 ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 158 TCACAGAGAGAAAGATATTTGAATATGGAAGCTCGAGTCGGTGTAGTGGTAGAAGGAGGA 217 Query 242 CAGAGAGCTCTTAATACAGCCACCACCACCGCCGTTCATAACACCGTCGTAGACGCCGGA 301 |||||||||||||||||||||||| |||||||||| ||||||| || || ||||||||| Sbjct 218 CAGAGAGCTCTTAATACAGCCACCGCCACCGCCGTGCATAACAGTGTTGTTGACGCCGGA 277 Query 302 AACAGGAAACTTTTACAGCAACAACCACAGACGCAACAGACACAAAGCTGTCATCAACAT 361 |||||||| || |||||||||||||| |||||| |||||||||||||| ||||||||| Sbjct 278 AACAGGAAGCTGTTACAGCAACAACCGCAGACG---CAGACACAAAGCTGCCATCAACAT 334 Query 362 CACCAAAGTAATAAACAGTCGTTGAATCAGCAGCAAGGCCATTTCGGCACCGTTGAGCGT 421 |||||| |||||||||||||| |||||||||| ||||| ||||||||||||||||||||| Sbjct 335 CACCAATGTAATAAACAGTCGCTGAATCAGCAACAAGGGCATTTCGGCACCGTTGAGCGT 394 Query 422 CTTCTCGCCGGTGGAATCGCCGGCGCATTTAGTAAGACATGCACCGCTCCTCTTGCTCGT 481 ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 395 CTTCTCGCCGGTGGAATCGCCGGCGCATTTAGTAAAACTTGCACCGCTCCTCTTGCTCGC 454 Query 482 CTTACAATCTTGTTTCAGATACAAGGTATGCAGTCGGAAGCTGCAATCTTGAGCAGTCCA 541 || || |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 455 CTCACCATCTTGTTTCAGATACAAGGTATGCAGTCGGAAGCTGCGATCTTGAGCAGTCCA 514 Query 542 AACATTTGGCATGAAGCTTCGCGTATTGTTAAGGAGGAAGGTTTTAGAGCATTTTGGAAA 601 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 515 AACATTTGGCATGAAGCTTCGCGTATTGTCAAGGAGGAAGGTTTTAGAGCATTTTGGAAA 574 Query 602 GGAAACTTGGTTACTGTAGCTCATCGGCTTCCTTATGGTGCAGTTAACTTCTATGCATAT 661 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 575 GGAAACTTGGTTACTGTAGCTCATCGGCTTCCCTATGGTGCAGTTAACTTCTATGCATAT 634 Query 662 GAAGAATACAAGACTTTCTTGCACTCGAATCCAGTCTTGCAGAGTTATAAAGGAAATGCG 721 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 635 GAAGAATACAAGACTTTCTTGCACTCGAATCCAGTCTTGCAGAGTTATAAAGGAAATGCA 694 Query 722 GGTGTGGACATTTCTGTGCACTTTGTAAGTGGTGGCTTGGCTGGACTAACAGCTGCTTCA 781 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 695 GGTGTGGACATTTCTGTGCACTTTGTAAGTGGTGGCTTGGCTGGACTAACAGCTGCTTCA 754 Query 782 GCTACCTACCCTCTCGATCTTGTAAGGACACGGCTTTCTGCACAGAGAAATTCAATCTAT 841 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 755 GCTACCTACCCTCTCGATCTTGTAAGGACACGGCTTTCTGCACAGAGAAATTCAATCTAT 814 Query 842 TATCAGGGTGTTGGGCATGCCTTCCGTACCATTTGCAGAGAAGAGGGAATTTTGGGTCTA 901 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 815 TATCAGGGTGTTGGGCATGCCTTCCGTACCATTTGCAGAGAAGAAGGAATTTTGGGTCTA 874 Query 902 TATAAAGGACTTGGTGCGACATTGTTGGGTGTCGGTCCAAGTCTTGCAATCAGCTTCGCA 961 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 875 TATAAAGGACTTGGTGCGACATTGTTGGGTGTCGGTCCAAGCCTTGCAATCAGCTTCGCA 934 Query 962 GCGTATGAGACTTTTAAAACATTTTGGCTCTCTCATAGGCCTAATGATTCAAATGCCGTG 1021 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 935 GCGTATGAGACTTTTAAAACATTTTGGCTCTCTCATAGGCCTAATGATTCAAATGCCGTG 994 Query 1022 GTTAGTCTTGGTTGTGGCAGTCTCTCCGGAATTGTTTCCTCTACAGCGACATTCCCATTG 1081 |||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||| Sbjct 995 GTTAGTCTTGGTTGTGGCAGCCTCTCTGGAATTGTTTCCTCGACAGCGACTTTCCCATTG 1054 Query 1082 GACCTGGTGAGAAGAAGAATGCAGTTGGAAGGAGCTGGTGGGCGAGCGAGAGTGTATACC 1141 |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 1055 GACCTGGTGAGAAGAAGAATGCAGTTGGAAGGAGCTGGTGGGCGAGCGCGAGTCTATACC 1114 Query 1142 ACAGGACTCTTTGGAACATTCAAACACATATTTAAGACAGAAGGCATGAGAGGGCTATAC 1201 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1115 ACGGGACTCTTTGGAACATTCAAACACATATTTAAGACAGAAGGCATGAGAGGGCTATAC 1174 Query 1202 AGAGGAATCATACCAGAATACTACAAAGTGGTTCCTGGTGTTGGCATCGCCTTCATGACA 1261 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1175 AGAGGAATCATACCAGAATACTACAAAGTGGTTCCTGGTGTTGGCATTGCCTTCATGACA 1234 Query 1262 TTCGAGGAATTGAAGAAGCTCTTATCAACTGTCCCTAATTAATAACGTCTTATATACTTT 1321 |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 1235 TTCGAGGAATTGAAGAAGCTCTTATCGTCTGCCCCTAATTAATAACGTCTTATATACTTT 1294 Query 1322 AGTGTAAGCTACTTTC-T-GC-TT---A-A-GAAACA---GACAATCATTTTGTCCTTTG 1370 |||||||||| ||| | | | || | | |||| | || ||||||||| ||||||| Sbjct 1295 AGTGTAAGCTTCTT-CATAGAGTTTGGAGAAGAAAAAATAGAAAATCATTTT-TCCTTTG 1352 Query 1371 TTTGGTAGTAGttttt-ttGGGTCTGTCAGTGTATAGTAGTAGTCTAGTAGTTGCAGTTT 1429 ||||||||||||||| || | | ||| | | | ||| || ||||||| ||||| Sbjct 1353 GTTGGTAGTAGTTTTTATT---T-T-TCAATCT-TCC-AGT-GTATAGTAGT---AGTTT 1401 Query 1430 TT-AGGAGTTAAGATTTACAATTTGTTGCTCCTCCATTAGCATCTTTCAAGATAACAATT 1488 || ||| ||||| |||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1402 TTTAGGTGTTAAAATTTACAATTTGTTGCTCCTCCATTAGCATCTCTCGAGATAACAATT 1461 Query 1489 TTGCCTTGTGCAAGAGCTCTT 1509 ||||||||| ||||||||||| Sbjct 1462 TTGCCTTGTTCAAGAGCTCTT 1482 > Ahg321492 jgi|Araly1|321492|fgenesh1_pm.C_scaffold_4001549 Length=1044 Score = 536 bits (290), Expect = 2e-151 Identities = 539/658 (82%), Gaps = 22/658 (3%) Strand=Plus/Plus Query 421 TCTTCTCGCCGGTGGAATCGCCGGCGCATTTAGTAAGACATGCACCGCTCCTCTTGCTCG 480 ||| ||||| || || || |||||||| ||||| ||||| || ||||||||||||||||| Sbjct 129 TCTCCTCGCTGGAGGTATTGCCGGCGCCTTTAGCAAGACCTGTACCGCTCCTCTTGCTCG 188 Query 481 TCTTACAATCTTGTTTCAGATACAAGGTATGCAGTCGGAAGCTGCAATCTTGAGCAGTCC 540 || || |||||||||||| | ||||| ||||| || |||| |||| | || ||| |||| Sbjct 189 CCTCACCATCTTGTTTCAGTTGCAAGGCATGCAATCAGAAGGTGCAGTGTTAAGCCGTCC 248 Query 541 AAACATT-TGGCATGAAGCTTCGCGTATTGTTAAGGAGGAAGGTTTTAGAGCATTTTGGA 599 || | || |||| ||||||||| |||||| | || |||||||| | |||||| ||||||| Sbjct 249 AAGC-TTATGGCGTGAAGCTTCCCGTATTATCAACGAGGAAGGATATAGAGCCTTTTGGA 307 Query 600 AAGGAAACTTGGTTACTGTAGCT-CATC-GGCTTCCTTATGGTGCAGTTAACTTCTATGC 657 |||| || ||||||||||||| | || | || |||||||| |||||| ||||||| ||| Sbjct 308 AAGGGAATTTGGTTACTGTAG-TACA-CAGGATTCCTTATACTGCAGTAAACTTCTTTGC 365 Query 658 ATATGAAGAA-TACAAGACT-TTCTTGC-ACTCGAATCCAGTCTTGCAGAGTTATAAAGG 714 ||||||| || ||||| || || || | | || ||||||||| | ||||||| || ||| Sbjct 366 ATATGAA-AAGTACAA-TCTATT-TTTCAATTCAAATCCAGTCGTACAGAGTTTTATAGG 422 Query 715 AAATGCGGGTGTG-GA-CATTTCTGTGCACTTTGTAAGTGGTGGCTTGGCTGGACTAACA 772 |||| || ||| | | | | |||||||||||| |||||||||||||||||| | ||| Sbjct 423 AAATACGAGTG-GCAACCCGAT-TGTGCACTTTGTTAGTGGTGGCTTGGCTGGAATTACA 480 Query 773 GCTGCTTCAGCTACCTA-CCCTCTCGATCTTGTAAGGACACGGCTTTCTGCACAGAGAAA 831 |||||| |||||||||| ||| ||||||||||| ||||| || ||| ||||||||||||| Sbjct 481 GCTGCTACAGCTACCTATCCC-CTCGATCTTGTCAGGACTCGTCTTGCTGCACAGAGAAA 539 Query 832 TTCAATCTATTATCAGGGTGTTGGGCATGCCTTCCGTACCATTTGCAGAGAAGAGGGAAT 891 | |||| ||||| |||||| ||| |||| | ||||||||||| ||||||||||||||| | Sbjct 540 TGCAATGTATTACCAGGGTATTGAGCATACTTTCCGTACCATATGCAGAGAAGAGGGACT 599 Query 892 TTTGGGTCTATATAAAGGACTTGGTGCGACATTGTTGGGTGTCGGTCCAAGTCTTGCAAT 951 ||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| || Sbjct 600 TTTGGGTCTATATAAAGGACTTGGTGCTACATTGTTGGGTGTTGGGCCAAGTCTTGCTAT 659 Query 952 CAGCTTCGCAGCGTATGAGACTTTTAAAACATTTTGGC-TCTCTCATAGGCCTAATGATT 1010 || ||||| ||||||||| || | ||| ||||||||| | ||||||||||| || |||| Sbjct 660 CAATTTCGCTGCGTATGAGTCTATGAAATCATTTTGGCAT-TCTCATAGGCCAAACGATT 718 Query 1011 CAAATGCCGTGGTTAGTCTTGGTTGTGGCAG-TCTCTCCGGAATTGTTTCCTCTACAG 1067 | ||| || |||| ||||| || ||| || ||| | ||| |||||| || |||| Sbjct 719 CGAATTTGGTTGTTACTCTTGTTTCTGG-AGGTCTAGCTGGAGCTGTTTCTTCAACAG 775 Score = 243 bits (131), Expect = 4e-63 Identities = 204/239 (85%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 1066 AGCGACATTCCCATTGGACCTGGTGAGAAGAAGAATGC-AGTTGGAAGGAGCTGGTGGGC 1124 ||| |||| ||||||||| || |||||||||||||||| || |||||||||||||||| Sbjct 807 AGCTACATACCCATTGGATCTTGTGAGAAGAAGAATGCAAG-TGGAAGGAGCTGGTGGAA 865 Query 1125 GAGCGAGAGTGTATACCACAGGACTCTTTGGAACATTCAAACACATATTTAAGACAGAAG 1184 ||||| |||| |||| ||| ||||||||||||||||||||||||||||| ||| |||||| Sbjct 866 GAGCGCGAGTATATAACACTGGACTCTTTGGAACATTCAAACACATATTCAAGTCAGAAG 925 Query 1185 GCATGAGAGGGCTATACAGAGGAATCATA-CCAGAATACTACAAAGTGGTTCCTGGTGTT 1243 |||| ||||| ||||||||||||| || || ||||| ||||||||||||||||| ||| Sbjct 926 GCATCAGAGGTTTATACAGAGGAAT-ATTGCCTGAATATTACAAAGTGGTTCCTGGCGTT 984 Query 1244 GGCATCGCCTTCATGACATTCGAGGAATTGAAGA-AGCTCTTATCAACTGTCCCTAATT 1301 ||||||| ||||||||||| ||||| |||| || | |||||| | || |||| |||| Sbjct 985 GGCATCGTCTTCATGACATACGAGGCTTTGAGGAGA-CTCTTAACTTCTCTCCCCAATT 1042 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57744811420 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5