BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53940.1
Length=1542
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485785 jgi|Araly1|485785|fgenesh2_kg.5__1777__AT3G53940.1 2145 0.0
Ahg321492 jgi|Araly1|321492|fgenesh1_pm.C_scaffold_4001549 536 2e-151
> Ahg485785 jgi|Araly1|485785|fgenesh2_kg.5__1777__AT3G53940.1
Length=1482
Score = 2145 bits (1161), Expect = 0.0
Identities = 1410/1521 (93%), Gaps = 53/1521 (3%)
Strand=Plus/Plus
Query 3 TTTACCAAAACACCCTTCTGCCTTCGCAGACCAGGTTTTAGGGGTTTCTCTAGGGTTTAC 62
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 TTTACCAAAATACCCTTCTGCCTTCGCAGACCAGGTTTTAGGGGTTTCTTTAGGGTTTAC 60
Query 63 CTTCTCCACGACGATTTCTCCAATCTGACAATCTCCGATCACAAAAATTCAGAAACCCTT 122
|||||||||||||| || | | || |||||||||||||| | | |||
Sbjct 61 CTTCTCCACGACGA-TT-T-C--TC---CAATCTCCGATCAC----A---A-AAA----- 99
Query 123 TCCGCTTTAATTGATGCGAATTCAGCTTCCATC-TCCGCCGCATCAACCACAGAGTAATC 181
| ||||||||||||||||| |||| |||||| | ||||||| ||||||||||||||||||
Sbjct 100 T-CGCTTTAATTGATGCGACTTCATCTTCCA-CATCCGCCGAATCAACCACAGAGTAATC 157
Query 182 TCACAGAGAGAAAGAGATTTGAATATGGAAGCTCGAGTCGGTGTAGTGGTGGAAGGAGGA 241
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 158 TCACAGAGAGAAAGATATTTGAATATGGAAGCTCGAGTCGGTGTAGTGGTAGAAGGAGGA 217
Query 242 CAGAGAGCTCTTAATACAGCCACCACCACCGCCGTTCATAACACCGTCGTAGACGCCGGA 301
|||||||||||||||||||||||| |||||||||| ||||||| || || |||||||||
Sbjct 218 CAGAGAGCTCTTAATACAGCCACCGCCACCGCCGTGCATAACAGTGTTGTTGACGCCGGA 277
Query 302 AACAGGAAACTTTTACAGCAACAACCACAGACGCAACAGACACAAAGCTGTCATCAACAT 361
|||||||| || |||||||||||||| |||||| |||||||||||||| |||||||||
Sbjct 278 AACAGGAAGCTGTTACAGCAACAACCGCAGACG---CAGACACAAAGCTGCCATCAACAT 334
Query 362 CACCAAAGTAATAAACAGTCGTTGAATCAGCAGCAAGGCCATTTCGGCACCGTTGAGCGT 421
|||||| |||||||||||||| |||||||||| ||||| |||||||||||||||||||||
Sbjct 335 CACCAATGTAATAAACAGTCGCTGAATCAGCAACAAGGGCATTTCGGCACCGTTGAGCGT 394
Query 422 CTTCTCGCCGGTGGAATCGCCGGCGCATTTAGTAAGACATGCACCGCTCCTCTTGCTCGT 481
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 395 CTTCTCGCCGGTGGAATCGCCGGCGCATTTAGTAAAACTTGCACCGCTCCTCTTGCTCGC 454
Query 482 CTTACAATCTTGTTTCAGATACAAGGTATGCAGTCGGAAGCTGCAATCTTGAGCAGTCCA 541
|| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 455 CTCACCATCTTGTTTCAGATACAAGGTATGCAGTCGGAAGCTGCGATCTTGAGCAGTCCA 514
Query 542 AACATTTGGCATGAAGCTTCGCGTATTGTTAAGGAGGAAGGTTTTAGAGCATTTTGGAAA 601
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 515 AACATTTGGCATGAAGCTTCGCGTATTGTCAAGGAGGAAGGTTTTAGAGCATTTTGGAAA 574
Query 602 GGAAACTTGGTTACTGTAGCTCATCGGCTTCCTTATGGTGCAGTTAACTTCTATGCATAT 661
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 575 GGAAACTTGGTTACTGTAGCTCATCGGCTTCCCTATGGTGCAGTTAACTTCTATGCATAT 634
Query 662 GAAGAATACAAGACTTTCTTGCACTCGAATCCAGTCTTGCAGAGTTATAAAGGAAATGCG 721
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 GAAGAATACAAGACTTTCTTGCACTCGAATCCAGTCTTGCAGAGTTATAAAGGAAATGCA 694
Query 722 GGTGTGGACATTTCTGTGCACTTTGTAAGTGGTGGCTTGGCTGGACTAACAGCTGCTTCA 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 GGTGTGGACATTTCTGTGCACTTTGTAAGTGGTGGCTTGGCTGGACTAACAGCTGCTTCA 754
Query 782 GCTACCTACCCTCTCGATCTTGTAAGGACACGGCTTTCTGCACAGAGAAATTCAATCTAT 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 GCTACCTACCCTCTCGATCTTGTAAGGACACGGCTTTCTGCACAGAGAAATTCAATCTAT 814
Query 842 TATCAGGGTGTTGGGCATGCCTTCCGTACCATTTGCAGAGAAGAGGGAATTTTGGGTCTA 901
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 815 TATCAGGGTGTTGGGCATGCCTTCCGTACCATTTGCAGAGAAGAAGGAATTTTGGGTCTA 874
Query 902 TATAAAGGACTTGGTGCGACATTGTTGGGTGTCGGTCCAAGTCTTGCAATCAGCTTCGCA 961
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 875 TATAAAGGACTTGGTGCGACATTGTTGGGTGTCGGTCCAAGCCTTGCAATCAGCTTCGCA 934
Query 962 GCGTATGAGACTTTTAAAACATTTTGGCTCTCTCATAGGCCTAATGATTCAAATGCCGTG 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 GCGTATGAGACTTTTAAAACATTTTGGCTCTCTCATAGGCCTAATGATTCAAATGCCGTG 994
Query 1022 GTTAGTCTTGGTTGTGGCAGTCTCTCCGGAATTGTTTCCTCTACAGCGACATTCCCATTG 1081
|||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||
Sbjct 995 GTTAGTCTTGGTTGTGGCAGCCTCTCTGGAATTGTTTCCTCGACAGCGACTTTCCCATTG 1054
Query 1082 GACCTGGTGAGAAGAAGAATGCAGTTGGAAGGAGCTGGTGGGCGAGCGAGAGTGTATACC 1141
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1055 GACCTGGTGAGAAGAAGAATGCAGTTGGAAGGAGCTGGTGGGCGAGCGCGAGTCTATACC 1114
Query 1142 ACAGGACTCTTTGGAACATTCAAACACATATTTAAGACAGAAGGCATGAGAGGGCTATAC 1201
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 ACGGGACTCTTTGGAACATTCAAACACATATTTAAGACAGAAGGCATGAGAGGGCTATAC 1174
Query 1202 AGAGGAATCATACCAGAATACTACAAAGTGGTTCCTGGTGTTGGCATCGCCTTCATGACA 1261
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1175 AGAGGAATCATACCAGAATACTACAAAGTGGTTCCTGGTGTTGGCATTGCCTTCATGACA 1234
Query 1262 TTCGAGGAATTGAAGAAGCTCTTATCAACTGTCCCTAATTAATAACGTCTTATATACTTT 1321
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1235 TTCGAGGAATTGAAGAAGCTCTTATCGTCTGCCCCTAATTAATAACGTCTTATATACTTT 1294
Query 1322 AGTGTAAGCTACTTTC-T-GC-TT---A-A-GAAACA---GACAATCATTTTGTCCTTTG 1370
|||||||||| ||| | | | || | | |||| | || ||||||||| |||||||
Sbjct 1295 AGTGTAAGCTTCTT-CATAGAGTTTGGAGAAGAAAAAATAGAAAATCATTTT-TCCTTTG 1352
Query 1371 TTTGGTAGTAGttttt-ttGGGTCTGTCAGTGTATAGTAGTAGTCTAGTAGTTGCAGTTT 1429
||||||||||||||| || | | ||| | | | ||| || ||||||| |||||
Sbjct 1353 GTTGGTAGTAGTTTTTATT---T-T-TCAATCT-TCC-AGT-GTATAGTAGT---AGTTT 1401
Query 1430 TT-AGGAGTTAAGATTTACAATTTGTTGCTCCTCCATTAGCATCTTTCAAGATAACAATT 1488
|| ||| ||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1402 TTTAGGTGTTAAAATTTACAATTTGTTGCTCCTCCATTAGCATCTCTCGAGATAACAATT 1461
Query 1489 TTGCCTTGTGCAAGAGCTCTT 1509
||||||||| |||||||||||
Sbjct 1462 TTGCCTTGTTCAAGAGCTCTT 1482
> Ahg321492 jgi|Araly1|321492|fgenesh1_pm.C_scaffold_4001549
Length=1044
Score = 536 bits (290), Expect = 2e-151
Identities = 539/658 (82%), Gaps = 22/658 (3%)
Strand=Plus/Plus
Query 421 TCTTCTCGCCGGTGGAATCGCCGGCGCATTTAGTAAGACATGCACCGCTCCTCTTGCTCG 480
||| ||||| || || || |||||||| ||||| ||||| || |||||||||||||||||
Sbjct 129 TCTCCTCGCTGGAGGTATTGCCGGCGCCTTTAGCAAGACCTGTACCGCTCCTCTTGCTCG 188
Query 481 TCTTACAATCTTGTTTCAGATACAAGGTATGCAGTCGGAAGCTGCAATCTTGAGCAGTCC 540
|| || |||||||||||| | ||||| ||||| || |||| |||| | || ||| ||||
Sbjct 189 CCTCACCATCTTGTTTCAGTTGCAAGGCATGCAATCAGAAGGTGCAGTGTTAAGCCGTCC 248
Query 541 AAACATT-TGGCATGAAGCTTCGCGTATTGTTAAGGAGGAAGGTTTTAGAGCATTTTGGA 599
|| | || |||| ||||||||| |||||| | || |||||||| | |||||| |||||||
Sbjct 249 AAGC-TTATGGCGTGAAGCTTCCCGTATTATCAACGAGGAAGGATATAGAGCCTTTTGGA 307
Query 600 AAGGAAACTTGGTTACTGTAGCT-CATC-GGCTTCCTTATGGTGCAGTTAACTTCTATGC 657
|||| || ||||||||||||| | || | || |||||||| |||||| ||||||| |||
Sbjct 308 AAGGGAATTTGGTTACTGTAG-TACA-CAGGATTCCTTATACTGCAGTAAACTTCTTTGC 365
Query 658 ATATGAAGAA-TACAAGACT-TTCTTGC-ACTCGAATCCAGTCTTGCAGAGTTATAAAGG 714
||||||| || ||||| || || || | | || ||||||||| | ||||||| || |||
Sbjct 366 ATATGAA-AAGTACAA-TCTATT-TTTCAATTCAAATCCAGTCGTACAGAGTTTTATAGG 422
Query 715 AAATGCGGGTGTG-GA-CATTTCTGTGCACTTTGTAAGTGGTGGCTTGGCTGGACTAACA 772
|||| || ||| | | | | |||||||||||| |||||||||||||||||| | |||
Sbjct 423 AAATACGAGTG-GCAACCCGAT-TGTGCACTTTGTTAGTGGTGGCTTGGCTGGAATTACA 480
Query 773 GCTGCTTCAGCTACCTA-CCCTCTCGATCTTGTAAGGACACGGCTTTCTGCACAGAGAAA 831
|||||| |||||||||| ||| ||||||||||| ||||| || ||| |||||||||||||
Sbjct 481 GCTGCTACAGCTACCTATCCC-CTCGATCTTGTCAGGACTCGTCTTGCTGCACAGAGAAA 539
Query 832 TTCAATCTATTATCAGGGTGTTGGGCATGCCTTCCGTACCATTTGCAGAGAAGAGGGAAT 891
| |||| ||||| |||||| ||| |||| | ||||||||||| ||||||||||||||| |
Sbjct 540 TGCAATGTATTACCAGGGTATTGAGCATACTTTCCGTACCATATGCAGAGAAGAGGGACT 599
Query 892 TTTGGGTCTATATAAAGGACTTGGTGCGACATTGTTGGGTGTCGGTCCAAGTCTTGCAAT 951
||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||
Sbjct 600 TTTGGGTCTATATAAAGGACTTGGTGCTACATTGTTGGGTGTTGGGCCAAGTCTTGCTAT 659
Query 952 CAGCTTCGCAGCGTATGAGACTTTTAAAACATTTTGGC-TCTCTCATAGGCCTAATGATT 1010
|| ||||| ||||||||| || | ||| ||||||||| | ||||||||||| || ||||
Sbjct 660 CAATTTCGCTGCGTATGAGTCTATGAAATCATTTTGGCAT-TCTCATAGGCCAAACGATT 718
Query 1011 CAAATGCCGTGGTTAGTCTTGGTTGTGGCAG-TCTCTCCGGAATTGTTTCCTCTACAG 1067
| ||| || |||| ||||| || ||| || ||| | ||| |||||| || ||||
Sbjct 719 CGAATTTGGTTGTTACTCTTGTTTCTGG-AGGTCTAGCTGGAGCTGTTTCTTCAACAG 775
Score = 243 bits (131), Expect = 4e-63
Identities = 204/239 (85%), Gaps = 6/239 (3%)
Strand=Plus/Plus
Query 1066 AGCGACATTCCCATTGGACCTGGTGAGAAGAAGAATGC-AGTTGGAAGGAGCTGGTGGGC 1124
||| |||| ||||||||| || |||||||||||||||| || ||||||||||||||||
Sbjct 807 AGCTACATACCCATTGGATCTTGTGAGAAGAAGAATGCAAG-TGGAAGGAGCTGGTGGAA 865
Query 1125 GAGCGAGAGTGTATACCACAGGACTCTTTGGAACATTCAAACACATATTTAAGACAGAAG 1184
||||| |||| |||| ||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 866 GAGCGCGAGTATATAACACTGGACTCTTTGGAACATTCAAACACATATTCAAGTCAGAAG 925
Query 1185 GCATGAGAGGGCTATACAGAGGAATCATA-CCAGAATACTACAAAGTGGTTCCTGGTGTT 1243
|||| ||||| ||||||||||||| || || ||||| ||||||||||||||||| |||
Sbjct 926 GCATCAGAGGTTTATACAGAGGAAT-ATTGCCTGAATATTACAAAGTGGTTCCTGGCGTT 984
Query 1244 GGCATCGCCTTCATGACATTCGAGGAATTGAAGA-AGCTCTTATCAACTGTCCCTAATT 1301
||||||| ||||||||||| ||||| |||| || | |||||| | || |||| ||||
Sbjct 985 GGCATCGTCTTCATGACATACGAGGCTTTGAGGAGA-CTCTTAACTTCTCTCCCCAATT 1042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57744811420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5