BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53950.1
Length=1821
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485786 jgi|Araly1|485786|fgenesh2_kg.5__1778__AT3G53950.1 2671 0.0
> Ahg485786 jgi|Araly1|485786|fgenesh2_kg.5__1778__AT3G53950.1
Length=1737
Score = 2671 bits (1446), Expect = 0.0
Identities = 1650/1748 (94%), Gaps = 15/1748 (1%)
Strand=Plus/Plus
Query 73 TAGCCAACAAAAAATGGCAGAACTTATTCCTTGGTACTACACTTCAGGGTCAGGGATCGT 132
|||||||||||||||||||||| || |||||| | ||||| || ||||||||||
Sbjct 1 TAGCCAACAAAAAATGGCAGAATTTGTTCCTT-CT--TACAC-TC-----CAGGGATCGT 51
Query 133 ACTTGTACTTCAAACCATTTTTCTCTTCTCGATCGTACGTGCTGATTTACCAGGCTCATG 192
||||||||||||||||||| ||||||||||||||| |||||| |||||||||||| | ||
Sbjct 52 ACTTGTACTTCAAACCATTCTTCTCTTCTCGATCGCACGTGCCGATTTACCAGGCACGTG 111
Query 193 GGAACTCATTGTACAAGACGCCGGTATAGCTTCTATGCACACGGCGGTGACCCGGTTCAA 252
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 GGAGCTCATTGTACAAGACGCCGGTATAGCTTCTATGCACACGGCGGTGACCCGGTTCAA 171
Query 253 CACGGTCATCCTTCTAGACCGAACTAACATCGGACCGTCGAGAAAGGCTCTTGACCGTCA 312
|||||| || |||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 172 CACGGTGATTCTTCTAGATCGAACAAACATCGGACCGTCGAGAAAGGCTCTTGATCGTCA 231
Query 313 CCGGTGCCGGAGAGACCCAAAAGACGCCGCTTTGAAACGCGATTGTTACGCTCACTCGGT 372
||||||||||||||||||||||||||| ||| |||| | |||||| ||||||||||||||
Sbjct 232 CCGGTGCCGGAGAGACCCAAAAGACGCAGCTCTGAAGCACGATTGCTACGCTCACTCGGT 291
Query 373 TCTGTTCGACCTTGGTACAAATCAGATCAGACCACTGATGATACAAACCGACACGTGGTG 432
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 292 TCTGTTCGACCTTGGTACAAATCAGATCAGACCATTGATGATACAAACTGACACGTGGTG 351
Query 433 CTCGTCGGGCCAGTTTTTATCCGACGGATCGTTGCTACAAACGGGTGGGGATAAAGACGG 492
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 352 CTCATCGGGTCAGTTTTTATCCGACGGATCGTTGCTTCAAACGGGTGGGGATAAAGACGG 411
Query 493 GTTTAAAAAGATACGTAAATTCGAACCCTGTGACCCGAACGAAACGTGCGATTGGGTGGA 552
|||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 412 GTTTAAAAAGATCCGTAAATTCGAACCGTGTGACCCGAACGAGACGTGCGATTGGGTGGA 471
Query 553 GCTTCAAGATACCGAATTGATAACCGGACGCTGGTACGCTTCTAACCAGATATTACCGGA 612
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 472 GCTTCAAGATACCGAATTGATAACCGGTCGCTGGTACGCTACTAACCAGATATTACCGGA 531
Query 613 TGGTTCGGTTATCATCGTCGGTGGTAGAGGAACTAATACGGTTGAGTATTACCCTCCACG 672
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 532 TGGTTCGGTTATCATCGTCGGTGGAAGAGGAACCAATACGGTTGAGTATTACCCTCCACG 591
Query 673 CGAAAACGGTGCCGTTCCGTTTCAGTTTCTTGCTGACGTGGAAGACAAACAAATGGATAA 732
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CGAAAACGGTGCCGTTTCGTTTCAGTTTCTTGCTGACGTGGAAGACAAACAAATGGATAA 651
Query 733 TCTCTATCCGTACGTTCATCTCCTCCCCGACGACGACGGTGGCAATCTCTTCATCTTCGC 792
||||||||||||||||||||||||||||||||||||||| ||| | |||||| |||||||
Sbjct 652 TCTCTATCCGTACGTTCATCTCCTCCCCGACGACGACGGCGGCCACCTCTTCGTCTTCGC 711
Query 793 CAACAGTCGCGCCGTTAAATACGATCACCGGATAAACGCCGTCGTGAAAGAGTATCCACC 852
|||||||||||||||||||||||||||||| ||||| | ||||||| ||||||||||||
Sbjct 712 TAACAGTCGCGCCGTTAAATACGATCACCGGTTAAACACTGTCGTGAGAGAGTATCCACC 771
Query 853 GTTAGACGGTGGTCCGAGGAATTATCCGTCAGGTGGATCATCGGCGATGCTAGCTATCCA 912
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 772 GTTAGAAGGTGGTCCGAGGAATTATCCGTCAGGTGGATCATCGGCGATGCTAGCGATCCA 831
Query 913 AGGAGATTTCACCACAGCGGAGATTCTAATCTGCGGCGGAGCACAATCCGGAGCCTTCAC 972
||||||||||||||| |||||||| ||||| ||||||||||| |||||||| ||||||||
Sbjct 832 AGGAGATTTCACCACGGCGGAGATACTAATTTGCGGCGGAGCTCAATCCGGGGCCTTCAC 891
Query 973 AGCGCGTGCAATTGATGCTCCGGCGCATGGAACCTGCGGACGAATCGTAGCTACCGCGGC 1032
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 AGCGCGTGCAATTGACGCTCCGGCGCATGGAACCTGCGGACGAATCGTAGCTACCGCGGC 951
Query 1033 GGATCCTGTTTGGGTGACGGAGGAGATGCCGTTCGGGAGAATCATGGGAGATATGGTGAA 1092
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 GGATCCCGTTTGGGTGACGGAGGAGATGCCGTTCGGGAGAATCATGGGAGATATGGTGAA 1011
Query 1093 TTTACCGACGGGAGAGATTCTGATCATAAACGGAGCTCAAGCCGGAAGCCAAGGATTCGA 1152
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1012 TTTACCGACGGGAGAGATTCTGATCATAAACGGAGCTCAAGCCGGTAGCCAAGGATTCGA 1071
Query 1153 AATGGGATCCGATCCGTGTTTATACCCGCTTTTATACCGACCCGATCAACCAATTGGTTT 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 AATGGGATCCGATCCGTGTTTATACCCGCTTTTATACCGACCCGATCAACCAATTGGTTT 1131
Query 1213 ACGATTCATGACGTTGAACCCAGGAACTGTACCGAGAATGTACCATTCCACGGCGAATCT 1272
|||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1132 ACGATTCATGACATTGAATCCAGGAACTGTACCGAGAATGTACCATTCAACGGCGAATCT 1191
Query 1273 TTTACCGGACGGTAGAATTCTTCTCGCCGGAAGCAATCCTCACTATTTCTACAAATTCAA 1332
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1192 TTTACCGGACGGTAGAATTTTTCTCGCCGGAAGTAATCCTCACTATTTCTACAAATTCAA 1251
Query 1333 CGCCGAATTCCCAACGGAGCTACGGATCGAAGCGTTTTCACCGGAGTATCTGTCACCGGA 1392
||||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 1252 CGCCGAATTCCCAACAGAGCTACGGATTGAAGCGTTTTCACCGGAGTATCTTTCGCCGGA 1311
Query 1393 TCGAGCTAATCTCCGACCAGAGATCCAAGAAATCCCGCAGATCATACGGTACGGAGAGGT 1452
||||||||||||||| || ||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1312 TCGAGCTAATCTCCGGCCTGAGATCCGAGAAATCCCGCAGATCGTACGGTACGGAGAGGT 1371
Query 1453 TTTCGACGTGTTCGTGACCGTGCCGTTGCCGGTGGTGGGGATAATTCAGATGAATTGGGG 1512
||||||||||||||||| ||||||||||||||||||| ||| || ||||| ||||||||
Sbjct 1372 CTTCGACGTGTTCGTGACGGTGCCGTTGCCGGTGGTGGAGATTATACAGATAAATTGGGG 1431
Query 1513 AAGTGCGCCTTTTGCGACTCATTCGTTTTCTCAAGGTCAACGGCTCGTTAAGTTGACCGT 1572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 AAGTGCGCCTTTTGCGACTCATTCGTTTTCTCAAGGTCAACGGCTCGTTAAGTTGACCGT 1491
Query 1573 TGCTCCGTCTGTGCCTGACGGAGTAGGTCGTTATAGGATTCAGTGTACGGCTCCACCTAA 1632
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1492 TGCTCCGTCTGTGCCTGACGGGGTTGGTCGTTATAGGATTCAGTGTACGGCTCCACCTAA 1551
Query 1633 CGGCGCCGTTTCTCCGCCTGGGTATTATATGGCCTTCGCTGTTAACCAGGGAGTTCCTAG 1692
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1552 CGGCGCCGTTTCTCCGCCTGGGTATTATATGGCCTTCGCCGTTAACCAGGGAGTTCCTAG 1611
Query 1693 CATTGCTCGATGGATACGAATAGTTTCTTGATTTAAA--A--CCAGAGGAGATATTTAAA 1748
||||||||| ||||| || |||||||||||||| ||| | |||| | ||||||||||
Sbjct 1612 CATTGCTCGCTGGATTCGTATAGTTTCTTGATTAAAATTAAACCAG-G-AGATATTTAAT 1669
Query 1749 ATGTTAATTTGTTAAATAGTTAAACACATCATGTAATATAAATATTTTCATGGAAAAACT 1808
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1670 TTTTTAATTTGTTAAATAGTTAAACACATGATGTAATATAAATATTTTCATGGAAAAACC 1729
Query 1809 TACTCCGC 1816
|||||||
Sbjct 1730 CACTCCGC 1737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68371989775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5