BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53970.1
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485789 jgi|Araly1|485789|fgenesh2_kg.5__1781__AT3G53970.1 1801 0.0
> Ahg485789 jgi|Araly1|485789|fgenesh2_kg.5__1781__AT3G53970.1
Length=1180
Score = 1801 bits (975), Expect = 0.0
Identities = 1113/1181 (94%), Gaps = 3/1181 (0%)
Strand=Plus/Plus
Query 4 CTTATAGTTTTCTTCTTTTCCAAGACCAAAATTTGTTGGAGAACGAACACTCTCGAGACG 63
||| |||||||||||||| |||||| |||||||||||| |||| ||||||||||||||||
Sbjct 1 CTTTTAGTTTTCTTCTTTCCCAAGATCAAAATTTGTTGAAGAAGGAACACTCTCGAGACG 60
Query 64 GAATCGATGGCGAATTCTCAGACGGTGATGGCTATGATCAGGTTGGCTAGACCTCCTTTC 123
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 GAATCGATGGCGAATTCTCAGACGGTGATGGCTATGATCAGGTTGGCTAGACCGCCTTTT 120
Query 124 CGCAACAATCACGATAAGGTTGCTTTCGCTATTCACTCTTCTTTCGTCGCTTCCGGTTAT 183
|||||||| ||||| |||||||||||||||||||||||||||||| || ||||||||||
Sbjct 121 CGCAACAACCACGACAAGGTTGCTTTCGCTATTCACTCTTCTTTCATCTCTTCCGGTTAC 180
Query 184 ATCCTCACCGCCACCGGACGGCCTGCTTTCGCCGACGAGGCTCTCTCTTCGTCTTCTCAG 243
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 ATCCTCACTGCCACCGGACGGCCTGCTTTCGCCGACGACGCTCTCTCTTCGTCTTCTCAG 240
Query 244 AATGATGTTGGAATCGAAGGATGGAACGAATTCGAGGGAGAGTATGCGTTTGTCTATGCG 303
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 AATGATGTTGGGATCGAAGGATGGAACGAATTCGACGGAGAGTATGCGTTTGTCTATGCG 300
Query 304 AATCCGAAGAAAGGGTCAAAGAAAATTCTGGTTAAGTGTTTGGCGATGGATGATAAACTT 363
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AATCCGAAGAAAGGATCAAAGAAAATTCTGGTTAAGTGTTTGGCGATGGATGATAAACTT 360
Query 364 CTTGTTGATGCCATAGCTGATGGTGGAGCAGAACCTGCTCATCTTGAGATTAAAGTTGGG 423
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTTGTTGATGCCATTGCTGATGGTGGAGCAGAACCTGCTCATCTTGAGATTAAAGTTGAT 420
Query 424 GATTATGCTGAGGAAAGCAATGAGGGGGATTACTCTGCGCAGTTCAAGAATTTGGATAAG 483
| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGTATGCTGAGGAGAGCATTGAGGGGGATTACTCTGCGCAGTTCAAGAATTTGGATAAG 480
Query 484 TTAGTGACTGATTTGCAGAGTGAGATTATCGATAAGCTTGATGGAAAACCAAAACCTGTT 543
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 481 TTAGTGACTGATTTGCAGAGTCAGATTCTCGATAAGCTTGATGGAAAACCAAAACCTGTT 540
Query 544 GCTTCGAGAGCACAGTCCAGCTCTGAGACTAATGAAGAGCCTAGATATTACGATGATACG 603
||||||||||| ||||| |||||||||| |||||||| ||||||||||| ||||||||
Sbjct 541 GCTTCGAGAGCCCAGTCTAGCTCTGAGAGAAATGAAGAACCTAGATATTATGATGATACT 600
Query 604 CCTAATCCATTAGGCCCTCAGATTCACCCCTCAGGCGTGGTAGTTCCTCCGATACCTGGT 663
|||| | |||||||||||| |||||| |||||||| ||||||||||||||||||||||||
Sbjct 601 CCTATTTCATTAGGCCCTCGGATTCATCCCTCAGGGGTGGTAGTTCCTCCGATACCTGGT 660
Query 664 AATGGTGGTTACAGTGATCTCTTCCCTGGCCCAGGTGCTGGAATGTACCCTGGCAGGGGT 723
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AATGGAGGTTACAGTGATCTCTTCCCTGGCCCAGGTGCTGGAATGTACCCTGGCAGGGGT 720
Query 724 GGTTTTGGGGATGGAAGCATGCTTGTAGGACCTACTGATCCTCGCTTTTTCCCATTTGGT 783
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 721 GGTTTTGGGGATGGAAGCATGCTTGTAGGACCTACTGATCCTCGCTTTTTCCCGTTTGGT 780
Query 784 GATGGTTCTGATCGACCTGGCTTCATGGGACCACCACACCCGGGTATGCCACCTCCTGGT 843
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 GATGGTTCTGATCGACCTGGCTTCATGGGACCACCACAACCGGGTATGCCACCTCCTGGT 840
Query 844 GCGCGTTTTGATCCTTATGGTCCACCCGGTGTTCCAGGTTTTGAGCCAGGCCGGTTCACA 903
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 841 GCTCGTTTTGATCCTTATGGTCCACCTGGTGTTCCAGGTTTTGAACCAGGCCGGTTCACA 900
Query 904 AGACAACCTCCAAGAGGGCCAGGAGGTGGGCATCCAGACCTCGAGCATTTTCCCGGCGGT 963
|| ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 901 AGGCAACCTCCAAGAGGGCCAGGAGGCGGGCACCCAGATCTCGAGCATTTTCCCGGCGGT 960
Query 964 TCAGATTTTATATAGTAAAGTAAAGCCATCGCCAAGGAAATAGAGAAAGTGTGTGCACAA 1023
||||||||||| |||||| ||||||| |||||||||||||||||||||| || ||||||
Sbjct 961 TCAGATTTTATTTAGTAATGTAAAGCAATCGCCAAGGAAATAGAGAAAGCATGAGCACAA 1020
Query 1024 CTTAAAGTATGGTAGTAACTACATATAGACAATAGGATCTAtgtggtttgttttttctca 1083
|||||||| ||||||||||||| || ||||| ||||||||| ||||||| |||||| |||
Sbjct 1021 CTTAAAGTCTGGTAGTAACTACTTACAGACAGTAGGATCTAAGTGGTTTTTTTTTTGTCA 1080
Query 1084 gctgtttttttgtttggtggtgttgttggttttATTCCCCAGCACACTT-TTTATAACTT 1142
||||||||| |||||||||||| |||||||||||||||||||| | || ||||||||||
Sbjct 1081 GCTGTTTTTGTGTTTGGTGGTGGTGTTGGTTTTATTCCCCAGCTGA-TTGTTTATAACTT 1139
Query 1143 C-AATAAATATATAAATAAAGACTTGGTTTATTTCGCTTTT 1182
| |||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CCAATAAATATATAAATAAAGACTTGGTTTATTTCGCTTTT 1180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44222583720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5