BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G53980.1

Length=592
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485791 jgi|Araly1|485791|fgenesh2_kg.5__1783__AT3G53980.2         625    1e-178


> Ahg485791 jgi|Araly1|485791|fgenesh2_kg.5__1783__AT3G53980.2
Length=518

 Score =  625 bits (338),  Expect = 1e-178
 Identities = 450/501 (90%), Gaps = 19/501 (4%)
 Strand=Plus/Plus

Query  31   AATCTTGGTTCA-TTTAAAATCTCTCCAAGAAACAAAATGGCAGCTTCCATGAAATTTCT  89
            |||||||||| | ||| ||||| ||||||||||| |||||||| ||||||| ||||||||
Sbjct  1    AATCTTGGTT-ACTTTCAAATCCCTCCAAGAAACTAAATGGCATCTTCCATTAAATTTCT  59

Query  90   CTGCATTCTTGGTCTGATTCTCCTCATCGGAACAGTCGTTGACGGTGCAGGGGAGTGTGG  149
            |||||| ||||| |||||||||||| || |||| |||||  |||||||||| ||||| ||
Sbjct  60   CTGCATACTTGGCCTGATTCTCCTCGTCAGAACCGTCGTCCACGGTGCAGGAGAGTGCGG  119

Query  150  TAGATCTTCGCCAGACAATGAGGCGATGAAGCTGGCTCCATGTGCTGGTGCAGCTCAGGA  209
            |||||||||||| |||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct  120  TAGATCTTCGCCGGACAATGAAGCAATGAAGCTGGCTCCATGTGCAGGTGCAGCTCAGGA  179

Query  210  CGCTAACTCCGCCGTGCCAGGAGGTTGCTGTACTCAGATTAAGAGATTTTCTCAAAACCC  269
            ||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  180  CGCAAACACCGCCGTGCCAGGAGGTTGTTGTACTCAGATTAAGAGATTTTCTCAAAACCC  239

Query  270  TAAATGTCTCTGCGCCATTCTTCTTTCCGACACGGCCAAAGCCTCCGGTGTCGATCCTGA  329
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  240  TAAATGTCTCTGCGCCATTCTTCTTTCCGACACGGCCAAAGCCTCCGGTGTTGATCCTGA  299

Query  330  GGTTGCCCTTACCATCCCTAAA-CGGTGCAATTTCGCTAACCGTCCC-GTCGGTTACAAG  387
            |||||||||||||||||| ||| || ||||||||||||||||| ||| || |||||||||
Sbjct  300  GGTTGCCCTTACCATCCC-AAAGCGCTGCAATTTCGCTAACCG-CCCAGTTGGTTACAAG  357

Query  388  TGTGGAGCATACACACTTCCATAAAATGTTGACGATTAGAAGGATGAAGGAGATAACATT  447
            |||||| |||||||||||||       ||  | ||| | | ||||||||||||||||| |
Sbjct  358  TGTGGACCATACACACTTCC-------GT--A-GAT-A-A-GGATGAAGGAGATAACACT  404

Query  448  GGGCCTTATGTGGAAGCTTGGAGTTTACTACTACGTCTCCATGTACCTTATAATATATGA  507
            | || |||||||||||||| ||||| ||||||| ||||||||||||| ||||||||||||
Sbjct  405  GAGCTTTATGTGGAAGCTTTGAGTTAACTACTATGTCTCCATGTACCGTATAATATATGA  464

Query  508  ATAACGATAATGTTTATATGT  528
            |||||||||||||||||||||
Sbjct  465  ATAACGATAATGTTTATATGT  485



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21672374552


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5