BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54000.1
Length=1635
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485794 jgi|Araly1|485794|fgenesh2_kg.5__1786__AT3G54000.1 1818 0.0
> Ahg485794 jgi|Araly1|485794|fgenesh2_kg.5__1786__AT3G54000.1
Length=1566
Score = 1818 bits (984), Expect = 0.0
Identities = 1318/1467 (90%), Gaps = 72/1467 (5%)
Strand=Plus/Plus
Query 1 TCGTCTTCTAGTAtttttttGTTTTCTGTTATTTTTCGCCTGAGACTGGGTCCCTGAG-A 59
|||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct 1 TCGTCTTCTAGT-GTTTTTTATTTTCTGTTA-TTTTCGCCTGAGACTGGGTCCCTGAGAA 58
Query 60 TTTCACAAAACTCGTTATTGAAACTTAACAAAACAGCAACCTCCGTTATTAAAGTTCCCT 119
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TTTCACAAAACTCATTATTGAAACTTAACAAAACAGCAACCTCCGTTATTAAAGTTCCCT 118
Query 120 --T-CTCGATTTCCGT-GAAAATTTCAC-TTTAGCCATGGAACCTCCTAGTAGCGTAGTC 174
| |||||||||||| |||||| ||| |||| |||||||| |||||||||||| ||
Sbjct 119 CCTCCTCGATTTCCGTGGAAAATCACACTTTTAACCATGGAA---CCTAGTAGCGTAATC 175
Query 175 GACGATGCTGAGTTTTGGCTTCCGACGGAGTTTCTCACTGACGATGATTTTCTCGTTGAG 234
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 176 GACGATGCTGAGTTTTGGCTTCCGCCGGAGTTTCTCACTGACGATGATTTTCTCGTTGAG 235
Query 235 AAGGAGAATAACAGTGTAGGAATCGATGACTCCTTGTTCCCGTACGAGCCTCGTCATGGA 294
|||||||||||| |||| |||||||||||||| |||||||||||||||||||||| |
Sbjct 236 AAGGAGAATAACGGTGTTGGAATCGATGACTCTTTGTTCCCGTACGAGCCTCGTC----A 291
Query 295 TTTGGGACTTTTGGCTCTACCGTTAAGCCTAACACGGTGAAGGAAGATGACGAGGAGAGT 354
| ||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 292 --T-GGA--TTTGGCTCTACCGTTAAGCCTAACACGGTGAAGAAAGACGACGAGGAGAGT 346
Query 355 TTCTTAGCCGGATTGACTCGGCAGATGGTTATGTCATCTCTCA-AAGATGATTTCTCCGG 413
||||||||||||||||||| ||||||||||| ||| ||||| | ||||||||||||||||
Sbjct 347 TTCTTAGCCGGATTGACTCAGCAGATGGTTAAGTCTTCTCT-AGAAGATGATTTCTCCGG 405
Query 414 TGGAGTTTGCGGTAATCACGCTTTTCCGGCCGGTAATGACCACAAGGCGTGGGAAATGAA 473
|||| ||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||
Sbjct 406 TGGATTTTGCGGTAATCACGCTTTTCCGGCCGCTAACGACAACAAGGCGTGGGGAATGAA 465
Query 474 TCGTTCGCCTCCGTGTGTCGCCGGAACTGGCTGTTGTTGCTTGAATCAGCGGTTTAACCA 533
|||| || ||| |||||||||||||||||||||||||||| ||||||||| || |||||
Sbjct 466 TCGTCCGTCTCTGTGTGTCGCCGGAACTGGCTGTTGTTGCCGGAATCAGCGATTGAACCA 525
Query 534 GAACCT-TAATTCGCGAGTTTCTTCATGGGATCTGTACTGTGCTGCGGAGAGGATGAGTA 592
||| || ||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 526 GAA-CTCCAATTCGCGAGTTTCTTCATGGGATCTGTACTGTGCCGCAGAGAGGATGAGTA 584
Query 593 TCAACGACGAACCATACCATAGTGGCAGAGGACTTCTCGGAT-CTCCCGCAAAAC--T-- 647
||||||||||||| ||||||| ||| |||||||||||||| | ||||| |||||| |
Sbjct 585 TCAACGACGAACCGTACCATACTGGTAGAGGACTTCTCGG-TCCTCCCACAAAACATTCC 643
Query 648 T---T--CCGCTACCGTCAAAAACCACTCTAACAACGGCACCGGTTACTACAACAATCAT 702
| | |||| |||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 644 TCCGTCGCCGCCGCCGTCAAAAACCACTCCAACAACGGCACCGGTTACTACAACAACCAT 703
Query 703 CAATCTCTCCAATACCAGAAGCTACAAGCTATCCAGTTTCAGCAGCTAAAGCAGCAACAG 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 CAATCTCTCCAATACCAGAAGCTACAAGCTATCCAGTTTCAGCAGCTAAAGCAGCAACAG 763
Query 763 TTAATGAAACATCGTCGCCAATTGGTGCGTCAGAACAGAGGAGTAAGAGTTAATGGCAAC 822
||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 764 TTAATGAAACATCATCGCCAATTGGTGCATCAGAGCAGAGGAGTAATAGTTAATGGCAAC 823
Query 823 AAAAATGTTGGTCCAGTGGATTTGTCGTCTTCTGCATGGTCTAATCAGTTTCCGAGGCGT 882
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 824 AAAAATGTTGGTCCAGTGAATTTGTCGTCTTCTGCATGGTCTAATCAGCTTCCGAGGCGT 883
Query 883 GATGTTATGAGAGCTGTATTCATCGGGGACCATACCGGAAAACGTGGCTCAACCGGAACC 942
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 884 GAAGTTATGAGAGCTGTATTCATCGGAGACCATACCGGAAAACGTGGCTCAACAGGAACC 943
Query 943 GGTGTCTTCTTACCTCGAAGTGTTAACCATACTTCAAGAACTGAGACTCGAGAGAAGCCT 1002
|| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 944 GGCGTCTTCTTACCTCGAAGCGTTAACCATACTTCAAGAACTGAGACTCGCGAGAAACCC 1003
Query 1003 ACTATATCGACGGTTTTGGTTCCGGCTAGACTGGCTCAGGTCCTGAATCTGAATTTAGGC 1062
||||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct 1004 ACTATATCGACAGTTTTGGTTCCGGCTAGATTGGCTCAAGTCCTGAATCTGAACTTAGGC 1063
Query 1063 GAACCGGTCCGGTCTACGGCTACTCTCAACGATGTGTCGTGGAGACAGAGGAGCAACAAT 1122
||||||||||||||| || | | |||||||||||||||||||||||||||||||||||||
Sbjct 1064 GAACCGGTCCGGTCTTCGACAAATCTCAACGATGTGTCGTGGAGACAGAGGAGCAACAAT 1123
Query 1123 GGTGGGTTCTCGAGCCAGATGGTCGGTGGCGTGAGGGCGGAGCAGTCAGTGCAAGAGCCT 1182
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1124 GGTGGGTTCTCGAGCCAGATGCACGGTGGCGCAAGGGCGGAGCAGTCAGTGCAAGAGCCT 1183
Query 1183 CGGTTACCATCGGAGTGGGCTTATTGACTGATTTTA-TGTTCGTAA-CTTTTGGGTGTGT 1240
|||||||| |||||||||||||||||||||||||| ||||||||| |||| || |||||
Sbjct 1184 CGGTTACCTTCGGAGTGGGCTTATTGACTGATTTTGGTGTTCGTAAACTTT-GGATGTGT 1242
Query 1241 TTAGGGGGAAGATTTTATGATGGGTTTGGTTTGAAGAAAGATTAGAGTTGATGACAGGTA 1300
|||||| ||||||||||| || | | | | | | | || | || | | ||
Sbjct 1243 TTAGGGTGAAGATTTTAT--TGA-T--GAT---A-G---G-T-AG--T-GA--A-A--TA 1280
Query 1301 GTGAAATAGTGGAAAAAAGGTTAGGGTTAATGTAGAGATAGTGGAAGATTTGGAAGAAGA 1360
||| || | |||| | |||||||| || |||| ||||||||||||||||||||||
Sbjct 1281 GTGGAA-A----AAAA--G-TTAGGGTTTATATAGA--TAGTGGAAGATTTGGAAGAAGA 1330
Query 1361 ATAAAGAAAGTTGGAAGTGTGGAGAGGACGAGGTTTTGGATCGTTTAACCACC-ATTGAT 1419
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1331 ATAAAGAAAGTTGCAAGTGTGGAGAGGACGAGGTTTTGGATCGTTTAACCACCCATTGAT 1390
Query 1420 GGCTTGATAGATGAAGAAAAGAGCTTT 1446
|||| ||||||||||| |||||| |||
Sbjct 1391 GGCT-GATAGATGAAGCAAAGAGTTTT 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61287204205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5