BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54010.1
Length=2209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938312 jgi|Araly1|938312|scaffold_502503.1 2723 0.0
Ahg898191 jgi|Araly1|898191|Al_scaffold_0005_2157 219 1e-55
> Ahg938312 jgi|Araly1|938312|scaffold_502503.1
Length=1958
Score = 2723 bits (1474), Expect = 0.0
Identities = 1568/1615 (97%), Gaps = 0/1615 (0%)
Strand=Plus/Plus
Query 163 ACTCTGGATTTGATCGGCGATGGCGGTAGGCGATCAGACGGAGCAGAATTACTTGCCGAA 222
|||||||| |||||||||||||||||| ||||||||||| ||||||| |||||| |||||
Sbjct 2 ACTCTGGAATTGATCGGCGATGGCGGTGGGCGATCAGACAGAGCAGACTTACTTACCGAA 61
Query 223 GAAGAAGAAATCCGAAACGGAAGATGATAAGAGGAGGAAGAAAATTGTTCCCGGGAGCTT 282
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 62 GAAGAAGAAATCCGAAACGGAAGACGATAAGAGGAGGAAGAAAATTGTTCCTGGGAGCTT 121
Query 283 GTTGAAAGCTGTGGTGCGACCTGGAGGAGGTGATTCGAGCCCCGTTGATGGTGATCAGGT 342
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 122 GTTGAAAGCTGTGGTGAGACCTGGAGGAGGTGATTCGAGCCCTGTTGATGGTGATCAGGT 181
Query 343 TATTTATCACTGCACTGTACGGACACTGGATGGTGTAGTTGTGGAATCTACGAGGTCAGA 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TATTTATCACTGCACTGTACGGACACTGGATGGTGTAGTTGTGGAATCTACGAGGTCAGA 241
Query 403 ATCTGGAGGGAGAGGTGTACCGATCAGAGATGTCTTGGGAAACAGCAAAATGATTCTTGG 462
|| ||||||||||||| ||||||| ||||||||| |||| || || |||||||| |||||
Sbjct 242 ATGTGGAGGGAGAGGTTTACCGATAAGAGATGTCCTGGGGAAGAGTAAAATGATCCTTGG 301
Query 463 ATTGCTCGAAGGAATTCCCACGATGCACAAGGGTGAAATTGCAATGTTCAAGATGAAACC 522
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 ATTGCTCGAAGGTATTCCCACGATGCACAAGGGTGAAATTGCAATGTTCAAGATGAAACC 361
Query 523 TGAAATGCACTATGCAGAGATTGATTGTCCAGTCTCAGCTCCAGAAAATTTTCCAAAAGA 582
||||||||| |||||||||| ||||||||| || |||||||||| ||||||||||||||
Sbjct 362 TGAAATGCATTATGCAGAGAATGATTGTCCTGTTTCAGCTCCAGGCAATTTTCCAAAAGA 421
Query 583 TGATGAGCTTCATTTTGAGATTGAGTTGTTGGATTTTTCTAAAGCCAAGATTGCAAGTGA 642
||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 422 TGACGAGCTTCATTTTGAGGTTGAGTTGTTGGATATTTCTAAAGCCAAGATTGCAAGTGA 481
Query 643 TGATCTGGGGGTCATCAAGAAGATTCTAAATGAAGGTGAGGGCTGGGAATCTCCCAGAGA 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TGATCTGGGGGTCATCAAGAAGATTCTAAATGAAGGTGAGGGCTGGGAATCTCCCAGAGA 541
Query 703 ACCCTATGAAGTGAAAGCCAGAATATCTGCTAAATCCGGTGATGGACACGTGATCTTCTC 762
|||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 542 ACCCTATGAAGTAAAAGCTAGAATATCTGCTAAATCCGGTGATGGACAAGTGATCTTCTC 601
Query 763 TCACACAGAAGAACCTTATTTCTTCACATTTGGAAAATCTGAGGTGCCTAAAGGTCTTGA 822
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TTATGCAGAAGAACCTTATTTCTTCACATTTGGAAAATCTGAGGTGCCTAAAGGTCTTGA 661
Query 823 AATCGGAATTGGAACCATGGCTCGGAAGGAGAAGGCAGTGATATATGTTCGCAAGCAGTA 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 AATCGGAATTGGAACCATGGCTCGGAAGGAGAAGGCAGTGATATATGTTCGCAAGCAGTA 721
Query 883 CTTGACTGAATCTCCTTTGTTGCATATAGATCAAGACCTTGAGGAAGTTCATTTTGAGGT 942
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 722 CTTGACTGAATCTCCTTTGTTGCATATAGATCAGGACCTTGAGGAAGTTCATTTTGAGGT 781
Query 943 TGAACTGGTACATTTCATTCAGGTGCGGGACATGCTTGGAGATGGACGTCTCATAAAACG 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 TGAACTGGTACATTTCATTCAGGTGCGGGACATGCTTGGAGATGGACGTCTCATAAAACG 841
Query 1003 TCGAATTCGAGATGGAAGAGGCGAGTTTCCAATGGATTGTCCTCTCCAAGATAGTCGTTT 1062
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 842 TCGAGTTCGAGATGGAAGAGGCGAGTTTCCAATGGATTGTCCTCTCCAAGATAGTCGGTT 901
Query 1063 AAGCGTTCACTACAAGGGCATGCTTCTCAATGAAGAGAAGACTGTCTTCTATGATAGCAA 1122
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 902 AAGCGTTCACTACAAGGGCATGCTTCTCAATGAAGAGAAAACTGTCTTCTATGATAGCAA 961
Query 1123 GATTGACAATAATGATCAACCGTTGGAGTTCAGTTCAGGAGAAGGACTGGTCCCTGAAGG 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 962 GATTGACAATAATGATCAACCGTTGGAGTTCAGTTCAGGAGAAGGACTGGTCCCTGAGGG 1021
Query 1183 GTTTGAGATGTGTACTCGTTTGATGCTACCTGGGGAGATTGCTCTTGTTACATGCCCCCC 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 GTTTGAGATGTGTACTCGTTTGATGCTACCTGGGGAGATTGCTCTTGTTACATGCCCCCC 1081
Query 1243 TGATTATGCATATGACAAATTTCCGAGACCACCTGGCGTGTCTGAAGGTGCACATGTTCA 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 TGATTATGCATATGACAAATTTCCGAGACCACCTGGCGTGTCTGAAGGTGCACATGTTCA 1141
Query 1303 GTGGGAGATTGAACTCCTTGGTTTCGAAACGCCAAGAGACTGGACTGGCTTGAACTTCCA 1362
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1142 GTGGGAGATTGAACTCCTTGGTTTTGAAACGCCAAGGGACTGGACTGGCTTGAACTTCCA 1201
Query 1363 GAGCATCATGGACGAGGCAGATAAAATCAGAAGCACGGGTAATAGGCTTTTCAAAGAAGG 1422
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1202 GAGCATCATGGACGAGGCAGATAAAATCAGAAGCACGGGTAACAGGCTTTTCAAAGAAGG 1261
Query 1423 AAAATTTGAGCTCGCAAAAGCAAAGTACGAAAAGGTGCTCCGGGAATTTAATCATGTTAA 1482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1262 AAAATTTGAGCTCGCAAAAGCAAAGTACGAAAAGGTGCTCCGGGAATTTAATCATGTCAA 1321
Query 1483 CCCACAAGATGAAGATGAAGGAAAAATATTTGGTGACACAAGGAATATGTTACATCTGAA 1542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 CCCACAAGATGAAGATGAAGGAAAAATATTTGGTGACACAAGGAATATGTTACATCTGAA 1381
Query 1543 TGTTGCGGCTTGCTTGCTTAAAATGGGAGAGTGGAGGAAGTCTATAGAGACATGCAATAA 1602
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1382 TGTTGCTGCTTGCTTGCTTAAAATGGGAGAGTGGAGGAAATCTATAGAGACATGCAATAA 1441
Query 1603 GGTTCTAGAAGCAAAGCCTGGTCATGTGAAAGGTCTATACCGCCGCGGAATGGCTTACAT 1662
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1442 GGTCCTAGAAGCAAAGCCTGGTCATGTGAAAGGTCTCTACCGCCGCGGAATGGCTTACAT 1501
Query 1663 TGCAGGTGGAGAGTATGATGACGCTAGAAATGACTTCAATATGATGATCAAAGTGGATAA 1722
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 TGCTGGTGGAGAGTATGATGACGCTAGAAATGACTTCAATATGATGATCAAAGTGGATAA 1561
Query 1723 ATCATCAGAAGCTGATGCGACCGCTGCTCTATTGAAACTGAAGCAGAAGGAACAG 1777
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 ATCATCAGAAGCTGATGCGACCGCTGCTCTATTGAAACTGAAGCAGAAGGAACAG 1616
Score = 363 bits (196), Expect = 4e-99
Identities = 214/223 (96%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 1880 ATAGAAGAAGTAGATGAGACAAAGGATAATGATGATGATGAAACACTGGAAGAAGAAGGA 1939
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1728 ATAGAAGAAGTAGATGAGACAAAGGATAATGATGATGATGAAACACAGGAAGAAGAAGGA 1787
Query 1940 GCTACGACAGTGAGCACGGAAAGGAAGAGGAAATGGTCGGAGAAAGCCTGGCCGTTTCTG 1999
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1788 ACTACGACAGTGAGCACGGAAAGGAAGAGGAAATGGTCGGAGAAAGCCTGGCCATTTCTG 1847
Query 2000 AAGAACGTGATGCTCCAAATCGGAATCCAGCTTGGTGTTGTTCTGATAGGGATTTTGATT 2059
|||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||
Sbjct 1848 AAGAACGTGATGCTCCAAATCGGAATCCAGCTCGGTGTTGTCCTGTTAGGGATTTTGATT 1907
Query 2060 TTCCAGTTTGTGAGCGCCAAATTTACATGAGAGAGATATGAAT 2102
|| ||||||||| |||||||||||||||||||||| |||||||
Sbjct 1908 TTTCAGTTTGTGGGCGCCAAATTTACATGAGAGAGCTATGAAT 1950
> Ahg898191 jgi|Araly1|898191|Al_scaffold_0005_2157
Length=324
Score = 219 bits (118), Expect = 1e-55
Identities = 234/286 (82%), Gaps = 23/286 (8%)
Strand=Plus/Plus
Query 347 TATCACTGCACTGTACGGACACTGGATGGTGTAGTTGTGGAATC-TACGAGGTCAGAATC 405
|||||||||| ||||| |||||||||||||| ||| |||||| | || |||||||||||
Sbjct 34 TATCACTGCAGTGTACAGACACTGGATGGTGAAGTAGTGGAAGCTTATGAGGTCAGAATG 93
Query 406 TGGAGGGAGAGGTGTACCGATCAGAGATGTCTTGGGAAACAGCAAAATGATTCTTGGATT 465
||||||||||| | ||||||| ||| |||||||| |||| ||||||||||| ||||||||
Sbjct 94 TGGAGGGAGAGATTTACCGATAAGACATGTCTTGAGAAAGAGCAAAATGATCCTTGGATT 153
Query 466 GCTCGAAGGAATTCCCACGATGCACAAGGGTGAAATTGCAATGTTCAAGATGAAACCTGA 525
||||||||||||||||||||| | | ||| | | ||||||||||
Sbjct 154 GCTCGAAGGAATTCCCACGAT---------T----T--CAA-G---A---TGAAACCTGA 191
Query 526 AATGCACTATGCAGAGATTGATTGTCCAGTCTCAGCTCCAGAAAATTTTCCAAAAGATGA 585
||||||||||||||| | |||||||||||||| || |||| |||||||||||||||||
Sbjct 192 AATGCACTATGCAGAAAGTGATTGTCCAGTCTTTGCGCCAGGCAATTTTCCAAAAGATGA 251
Query 586 TGAGCTTCATTTTGAGATTGAGTTGTTGGATTTTTCTAAAGCCAAG 631
|||| ||| ||||||||||| ||| ||||||| | |||||||||
Sbjct 252 TGAGTTTCGTTTTGAGATTGCTTTGATGGATTTCCCAAAAGCCAAG 297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83151004835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5