BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54020.1
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938313 jgi|Araly1|938313|scaffold_502504.1 1576 0.0
Ahg482800 jgi|Araly1|482800|fgenesh2_kg.4__1860__AT2G37940.1 1005 0.0
> Ahg938313 jgi|Araly1|938313|scaffold_502504.1
Length=959
Score = 1576 bits (853), Expect = 0.0
Identities = 921/955 (96%), Gaps = 0/955 (0%)
Strand=Plus/Plus
Query 349 TAACAAAGAAGAAGATAATGACGCTTTATATTCGCCGCGAAGCTTCCAAGCTATGGAGGA 408
||||||| |||| |||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 5 TAACAAACAAGATTATAATGACGCTTTACATTCGCCGCGAAGCTTCCAAGCTATGGAAGA 64
Query 409 GATTTTGTTCGGAAATAACAACGGAGATTGGTCTCCTCGCTGAGAACTGGAAATACCTTC 468
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 65 GATTTTGTTCGGAAATAACGACAGAGATTGGTCTCCTCGCTGAGAACTGGAAATACCTTC 124
Query 469 TTGCTGGTCTTCTCTGTCAGTATATTCATGGTTTAGCTGCCAGGGGAGTTCATTATATTC 528
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 125 TTGCTGGTCTTCTCTGTCAGTATATTCATGGTTTAGCTGCTAGGGGAGTTCATTATATTC 184
Query 529 ATCGGCCAGGACCAACGCTTCAAGATTCTGGCTTTTTTGTTCTTCCGGAGCTTGGTCAAG 588
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 ACCGGCCTGGACCAACGCTTCAAGATTCTGGCTTTTTTGTTCTTCCGGAGCTTGGTCAAG 244
Query 589 ATAAAGGCTTCATAAGTGAAACTGTGTTCACTTGTGTATTTCTTTCATTTTTCCTGTGGA 648
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 ATAAAGGCTACATAAGTGAAACTGTGTTCACTTGTGTATTTCTTTCATTTTTCCTGTGGA 304
Query 649 CTTTCCATCCTTTCATCGTGAAAAGCAAGAAGATATACACTGTGTTGATATGGTGCAGGG 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 CTTTCCATCCTTTCATCGTGAAAAGCAAGAAGATATACACTGTGTTGATATGGTGCAGGG 364
Query 709 TTCTCGCCTTCTTAGTTGCTTGTCAGTTTCTCCGTGTTATAACATTCTATTCAACTCAGC 768
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 365 TTCTCGCCTTCTTAGTTGCTTGTCAGTTTCTCCGTGTTATAACATTCTATTCGACTCAGC 424
Query 769 TTCCTGGCCCTAACTATCACTGTCGAGAGGGTTCTGAGCTTGCCAGGTTGCCAAGGCCAC 828
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 425 TTCCTGGCCCCAACTATCACTGTCGAGAGGGTTCTGAGCTTGCCAGGTTGCCACGGCCAC 484
Query 829 ATAACGTTCTTGAGGTTCTCTTGCTCAACTTTCCTCGTGGTGTGATATACGGATGTGGAG 888
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 485 ATAACGTTCTTGAGGTGCTCTTGCTCAACTTTCCTCGTGGGGTGATATACGGATGTGGAG 544
Query 889 ACCTGATTTTCTCATCGCACATGATATTCACACTAGTCTTTGTCCGCACTTACCAGAAAT 948
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 545 ACCTGATTTTCTCATCGCACATGATATTCACACTAGTCTTTATCCGCACTTACCAGAAAT 604
Query 949 ACGGTTCTAAAAGGTTCATAAAGCTGTTAGGTTGGGTCATTGCCATCTTGCAAAGCCTCT 1008
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 605 ACGGTTCTAAAAGGTTCATAAAGCTGTTAGGTTGGGTCGTTGCCATCTTGCAAAGCCTCT 664
Query 1009 TGATTATTGCGTCCCGTAAACATTACACTGTTGATGTGGTTGTTGCGTGGTATACTGTGA 1068
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 665 TGATTATTGCCTCCCGTAAACATTACACTGTCGATGTGGTTGTTGCGTGGTATACTGTGA 724
Query 1069 ACTTGGTTGTCTTCTTCCTCGACAAGAAATTACCAGAATTGCCTGATCGAACAACGGCAT 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 725 ACTTGGTTGTCTTCTTCCTCGACAAGAAATTACCAGAATTGCCTGATCGAACAACGGTAT 784
Query 1129 TGCTCCCTGTGATCTCAAAAGACAGAACCAAAGAAGAGAGTCACAAACTCTTGAATGGGA 1188
|||||||||||||||| |||||||||| ||||||||||| ||||||||||||||| ||||
Sbjct 785 TGCTCCCTGTGATCTCGAAAGACAGAAGCAAAGAAGAGAATCACAAACTCTTGAACGGGA 844
Query 1189 ACGGTGTTGATCCTGCAGATCGGAGACCGAGGGCTCAAGTGAATGGCAAAGACAGCAATG 1248
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 845 ACGGTGTTGATCCTGCAGATAGGAGACTGAGGGCTCAAGTGAATGGCAAAGACAGCAATG 904
Query 1249 GAGGTCACACTGATAATGCTACTAATGGCACATGAGATCTCTGCTCGACTCTAGT 1303
|||||||||||||||||| ||| ||| | ||||||| |||||||||||| ||||
Sbjct 905 GAGGTCACACTGATAATGGTACCAATAGTGCATGAGAACTCTGCTCGACTTTAGT 959
> Ahg482800 jgi|Araly1|482800|fgenesh2_kg.4__1860__AT2G37940.1
Length=1240
Score = 1005 bits (544), Expect = 0.0
Identities = 802/926 (87%), Gaps = 19/926 (2%)
Strand=Plus/Plus
Query 350 AACAAAGAAGAA-GAT-A-ATGACGCTTTATATTCGCCGCGAAGCTTCCAAGCTATGGAG 406
|||||| ||||| || | ||||| ||||| ||||| |||||| |||||||||||||||
Sbjct 301 AACAAACAAGAATAATAAGATGACACTTTACATTCGTCGCGAATCTTCCAAGCTATGGAA 360
Query 407 GAGATTTTGTTCGGAAATAACAACGGAGATTGGTCTCCTCGCTGAGAACTGGAAATACCT 466
||||||||| || || ||| | |||||||||||||| || ||||||||||||||||| ||
Sbjct 361 GAGATTTTGCTCTGAGATATCGACGGAGATTGGTCTTCTTGCTGAGAACTGGAAATATCT 420
Query 467 TCTTGCTGGTCTTCTCTGTCAGTATATTCATGGTTTAGCTGCCAGGGGAGTTCATTATAT 526
||| ||||||||| |||||||||| ||||||||||||||||| | ||||||||||||||
Sbjct 421 TCTCGCTGGTCTTATCTGTCAGTACATTCATGGTTTAGCTGCTAAAGGAGTTCATTATAT 480
Query 527 TCATCGGCCAGGACCAACGCTTCAAGATTC-TGGCTTTTTTGTTCTTCCGGAGCTTGGTC 585
|||||| || |||||||||||||| || || ||| || ||| ||||||||||||||||||
Sbjct 481 TCATCGCCCGGGACCAACGCTTCAGGA-TCTTGGGTTCTTTCTTCTTCCGGAGCTTGGTC 539
Query 586 AAGATA-AAGGCTTCATAAGTGAAACTGTGTTCACTTGTGTATTTCTTTCATTTTTCCTG 644
|||| | || ||| |||||||||||| ||||||||| |||| |||||||| |||||||||
Sbjct 540 AAGAGAGAA-GCTACATAAGTGAAACCGTGTTCACTAGTGTGTTTCTTTCGTTTTTCCTG 598
Query 645 TGGACTTTCCATCCTTTCATCGTGAAAAGCAAGAAGATATACACTGTGTTGATATGGTGC 704
|||||||||||||| ||||| |||||| ||| ||||||||||| |||||||||||||||
Sbjct 599 TGGACTTTCCATCCATTCATTTTGAAAACCAAAAAGATATACACCGTGTTGATATGGTGC 658
Query 705 AGGGTTCTCGCCTTCTTAGTTGCTTGTCAGTTTCTCCGTGTTATAACATTCTATTCAACT 764
|| ||||| || ||||||||||| || ||||||||||||||||| || ||||||||||||
Sbjct 659 AGAGTTCTAGCATTCTTAGTTGCCTGCCAGTTTCTCCGTGTTATTACTTTCTATTCAACT 718
Query 765 CAGCTTCCTGGCCCTAACTATCACTGTCGAGAGGGTTCT-GAGCTTGCCAGGTTGCCAAG 823
||||||||||||||||||||||||||||| ||||| ||| || || ||||||||||| |
Sbjct 719 CAGCTTCCTGGCCCTAACTATCACTGTCGCGAGGGCTCTAAAG-TTTCCAGGTTGCCATG 777
Query 824 GCCACATAA-CGTTCTTGAGGTTCTCTTGCTCAACTTTCCTCGTGGTGTGATATACGGAT 882
||| || || || ||||||||| ||| | | ||| |||| ||| ||||| |||||||
Sbjct 778 GCC-CAAAAGCGCTCTTGAGGTGCTCGAGATTAAC---CCTCATGGGGTGATGTACGGAT 833
Query 883 GTGGAGACCTGATTTTCTCATCGCACATGATATTCACACTAGTCTTTGTCCGCACTTACC 942
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 834 GCGGAGACCTGATTTTCTCATCGCACATGATATTCACACTAGTCTTTGTCCGTACTTACC 893
Query 943 AGAAATACGGTTCTAAAAGGTTCATAAAGCTGTTAGGTTGGGTCATTGCCATCTTGCAAA 1002
|||||||||| |||||||||||||||||||||| || ||| ||||||| ||| |||| |
Sbjct 894 AGAAATACGGCACTAAAAGGTTCATAAAGCTGTTTGGGTGGCTCATTGCAATCGTGCAGA 953
Query 1003 GCCTCTTGATTATTGCGTCCCGTAAACATTACACTGTTGATGTGGTTGTTGCGTGGTATA 1062
| |||||||| ||||| || ||||||||||||| ||| ||||| |||||||| |||||||
Sbjct 954 GTCTCTTGATCATTGCCTCTCGTAAACATTACAGTGTCGATGTCGTTGTTGCATGGTATA 1013
Query 1063 CTGTGAACTTGGTTGTCTTCT-TCCTCGACAAGAAATTACCAGAATTGCCTGATCGAACA 1121
||||||| ||||| || |||| || | |||||||||||||||||||| || ||||| ||
Sbjct 1014 CTGTGAATTTGGTGGTGTTCTGTC-TAGACAAGAAATTACCAGAATTACCAGATCGGACT 1072
Query 1122 ACGGCATTGCTCCCTGTGATCTCAAAAGACAGAACCAAAGAAGAGAGTCACAAACTCTTG 1181
| | |||||||| || |||||||||||||||||||||||||||| ||||| || |||
Sbjct 1073 GCTGTGTTGCTCCCAGTAATCTCAAAAGACAGAACCAAAGAAGAGAACCACAAGCTGTTG 1132
Query 1182 AATGGGAACGGTGTTGATCCTGCAGATCGGAGACCGAGGGCTCAAGTGAATGGCAA-A-- 1238
||||||||||||||||||||||| ||| |||| ||||||||||| ||||| || || |
Sbjct 1133 AATGGGAACGGTGTTGATCCTGCTGATTGGAGGCCGAGGGCTCAGGTGAACGGGAAGATT 1192
Query 1239 GACAGCAATGGAGGTCACACTGATAA 1264
||||||||||||| |||||| |||||
Sbjct 1193 GACAGCAATGGAGTTCACACCGATAA 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56792555295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5