BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54030.1
Length=1911
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485799 jgi|Araly1|485799|fgenesh2_kg.5__1791__AT3G54030.1 2673 0.0
Ahg490499 jgi|Araly1|490499|fgenesh2_kg.6__3633__AT4G00710.1 252 8e-66
> Ahg485799 jgi|Araly1|485799|fgenesh2_kg.5__1791__AT3G54030.1
Length=1804
Score = 2673 bits (1447), Expect = 0.0
Identities = 1700/1813 (94%), Gaps = 54/1813 (3%)
Strand=Plus/Plus
Query 76 agaagaagaagaagaaagCTTGAGACTTTCTCTCTGTGTGCAATTTCGAAATCGATAAAG 135
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 41 AGAAGAAGAAGAAGAAAGCTTGAGACTTTCTCTCTGTATGC-ATTTCGAAATCGATAAAG 99
Query 136 ACTTCAACTTTCGGTTCTAACAATGACAATTTCCGTATAGTTTGATTTTGTCCACCTCTT 195
|||||||||||||||||||||||||||||||| | | || | | |||| | ||
Sbjct 100 ACTTCAACTTTCGGTTCTAACAATGACAATTT---T-T-GTAT-AGTTTG---A----TT 146
Query 196 TCACCGATTACCTGATTTCATCGCTGGCGTTAGTCATCAAATGGGAGCTCGTTGCTCAAA 255
| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||| ||
Sbjct 147 T--CCGATCACCTGATTTCATCGCCGACGTTAGTCATCAAATGGGAGCTCGTTGCTCTAA 204
Query 256 GTTCTCATTCTGCTTGTTCCCTTCTCACTTCAAATCCGCTTCAGTTCTCGAGTCTCCTGA 315
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 205 GTTCTCATTCTGCTTGTTCCCTTCTCACTTCAAATCCGCTTCAGTTCTCGAATCTCCCGA 264
Query 316 TATC-G--AGAATGGAGGAAAAGTGTGGCCGACTTTTAAGGAATTCAAATTGGAGCAGCT 372
| || | ||||||||||||||||||||||| |||||||||||||| | | ||||||||
Sbjct 265 TCTCGGTCTGAATGGAGGAAAAGTGTGGCCGAGTTTTAAGGAATTCAGACTAGAGCAGCT 324
Query 373 GAAATCTGCGACCGGAGGTTTCTCTTCAGACAACATTGTATCAGAACACGGCGAGAAAGC 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 GAAATCTGCGACCGGAGGTTTCTCTTCAGACAACATTGTATCAGAACACGGCGAGAAAGC 384
Query 433 TCCAAACGTTGTCTACAGAGGAAGGCTTGATGATGGTCGTTTGATTGCTGTCAAACGATT 492
||| |||||||||||||||||||| || ||||||||||| ||||| ||||| ||||||||
Sbjct 385 TCCTAACGTTGTCTACAGAGGAAGACTCGATGATGGTCGCTTGATCGCTGTTAAACGATT 444
Query 493 CAATCGCCTTGCTTGGGCTGATCATCGACAGTTCCTGGATGAAGCTAAAGCTGTTGGGAG 552
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 445 CAATCGCCTGGCTTGGGCTGATCATCGACAGTTCCTGGATGAAGCGAAAGCTGTTGGGAG 504
Query 553 CTTGAGGAGTGATAGATTAGCGAATCTGATTGGATGTTGCTTTGAAGGAGAAGAGAGATT 612
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 505 CTTGAGGAGTGATAGATTAGCGAATCTGATAGGATGTTGCTACGAAGGAGAAGAGAGATT 564
Query 613 ACTAGTTGCTGAGTTTATGCCTCATGAAACGCTTGCAAAGCATCTTTTCCACTGGGAGAA 672
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 565 ACTCGTTGCTGAGTTTATGCCTCACGAAACGCTTGCAAAGCATCTTTTCCACTGGGAAAA 624
Query 673 TAATCCGATGAAATGGGCGATGAGATTAAGAGTTGCATTGTGTTTAGCACAAGCATTGGA 732
| |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 625 TCATCCGATGAAATGGGCCATGAGGTTAAGAGTTGCATTGTGTTTAGCGCAAGCATTGGA 684
Query 733 ATATTGTAGTAATAAAGGGAGAGCTTTGTATCATGATCTCAATGCTTACAGGGTTTTGTT 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 ATATTGTAGTAATAAAGGGAGAGCTTTGTATCATGATCTCAATGCTTACAGGGTTTTGTT 744
Query 793 TGACAAGGATGGGAATCCCAGGTTGTCTTGTTTTGGACTCATGAAAAATAGCAGAGATGG 852
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 745 TGACAAGGATGGGAATCCCAGGTTGTCTTGCTTTGGACTCATGAAAAATAGCAGAGATGG 804
Query 853 GAAGAGTTATAGCACAAACTTGGCATTTACTCCTCCAGAGTATTTGCGAACGGGTAGAGT 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 GAAGAGTTATAGCACAAACTTGGCATTTACTCCTCCAGAGTATTTGCGAACGGGTAGAGT 864
Query 913 TACACCAGAGAGTGTTGTATTCAGTTTTGGAACCGTTTTGCTCGATCTCATGAGTGGAAA 972
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 TACACCAGAGAGTGTAGTATTCAGTTTTGGAACCGTTTTGCTCGATCTCATGAGTGGAAA 924
Query 973 ACATATTCCACCGAGTCATGCGCTTGACCTAATCAGAGGCAAGAACTGTGCAATGTTAAT 1032
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 ACATATTCCACCGAGCCATGCGCTTGACCTAATCAGAGGCAAGAACTGTGCAATGTTAAT 984
Query 1033 GGATTCTGCTCTCGAGGGTCATTTCTCAAACGAAGACGGAACTGAGCTAGTACGCTTAGC 1092
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 GGATTCTGCTCTTGAGGGTCATTTCTCAAACGAAGACGGAACTGAGCTAGTACGCTTAGC 1044
Query 1093 CACACGTTGTCTGCAGTATGAAGCTCGAGAAAGACCAAATGTGAAATCTCTCGTGACTTC 1152
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1045 CACACGTTGTCTGCAGTATGAAGCTCGAGAAAGACCAAATGTGAAATCTCTCGTCACTTC 1104
Query 1153 ACTTGTCACACTCCAGAAGGAATCTGATGTAGCTTCCTACGTTCTTATGGGTATACCCCA 1212
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 1105 ACTTGTCACACTCCAGAAGGAATCTGATGTAGCTTCATATGTTCTTATGGGTATCCCCCA 1164
Query 1213 TGAAACCGAGGCTGAAGAAGAGTCTCCGCTTTCTTTGACACCCTTTGGTGATGCATGCTT 1272
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 TGAAACCGAGGCTGAGGAAGAGTCTCCGCTTTCTTTGACACCCTTTGGTGATGCATGCTT 1224
Query 1273 AAGAGTGGATCTTACAGCCATACAGGAAATACTCAGTAAGATTGGATACAAGGATGATGA 1332
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1225 AAGAGTGGATCTTACAGCCATACAGGAAATACTTAGTAAGATTGGATACAAGGATGATGA 1284
Query 1333 AGGAATTGCCAATGAGCTCTCGTTTCAAATGTGGACCAATCAGATGCAGGAATCTCTCAA 1392
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1285 AGGAATTGCCAATGAGCTCTCGTTTCAAATGTGGACCAACCAGATGCAGGAATCTCTCAA 1344
Query 1393 TTCGAAGAAGCAAGGCGACTTAGCTTTCCGTTCCAAAGATTTTACAACCGCGGTCGATTG 1452
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1345 TTCGAAGAAGCAAGGAGACTTAGCTTTCCGTTCCAAAGATTTTACAACCGCAGTCGATTG 1404
Query 1453 CTACACTCAGTTCATAGATGGGGGAACAATGGTGTCACCAACAGTACACGCACGGCGGTG 1512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405 CTACACTCAGTTCATAGATGGGGGAACAATGGTGTCACCAACAGTACACGCACGGCGGTG 1464
Query 1513 CTTGTCATATCTGATGAACGACAACGCACAAGAGGCTCTGACAGATGCATTGCAGGCACA 1572
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1465 CCTGTCATATCTGATGAACGAGAACGCACAAGAGGCTCTGACAGATGCATTGCAGGCACA 1524
Query 1573 GGTTGTGTCTCCGGATTGGCCAACCGCCTTGTATCTGCAAGCGGCTTGCTTGTTCAAGCT 1632
||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1525 GGTTGTGTCTCCGGAATGGCCAACCGCTTTGTATCTGCAAGCGGCTTGCTTATTCAAGCT 1584
Query 1633 GGGTATGGAAGCCGATGCTCAGCAAGCTCTTAAGGATGGGACTACATTGGAAGCTAAGAA 1692
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1585 CGGTATGGAAGGCGATGCTCAGCAAGCTCTCAAGGATGGGACTACATTGGAAGCTAAGAA 1644
Query 1693 GAGTAACAAGCGCTGATAAAATAGCGTTTTCAAAAGCTTTTGTATATGCTTTATTTTGTT 1752
|||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1645 GAGTAACAAGCGCTGATAAA-TAGCGTTTTCAAAAGCTTT-GTATATGCTT--------- 1693
Query 1753 TCCTTTCTCTCTATTTCCATCTATATGCGCATACATACACATAT--GCGGGTGTATTTAT 1810
| | |||| || ||||||||||||| ||||||||||||||| | ||||||||||||
Sbjct 1694 -C-T--CTCT--ATCTCCATCTATATGCACATACATACACATATATGTGGGTGTATTTAT 1747
Query 1811 TATATATGTGCATATACTTTTGATGCCTTGTTTGTTGTATTTATTTTTTAGTATGCCTCA 1870
||| | | | || |||||||||||||| |||||||| ||||| |||||||
Sbjct 1748 -ATA------C-T-T--TT--GATGCCTTGTTTGT---ATTTATTTATTAGTGTGCCTCA 1791
Query 1871 TGGGAAGATCTCT 1883
|||||||||||||
Sbjct 1792 TGGGAAGATCTCT 1804
Score = 86.1 bits (46), Expect = 9e-16
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 21 aaaaaCAATTCTCTTTGTAGAGGGAAGTCTGAAAACGCCGagaagaaga 69
||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAACAATCCTCTTTGTAGAGGGAAGTCTGAAAACGCCGAGAAGAAGA 49
> Ahg490499 jgi|Araly1|490499|fgenesh2_kg.6__3633__AT4G00710.1
Length=2362
Score = 252 bits (136), Expect = 8e-66
Identities = 705/968 (73%), Gaps = 86/968 (9%)
Strand=Plus/Plus
Query 475 GATTGCTGTCAAACGATTCAATCGCCTTGCTTGGGCTGAT-CATCGACAGTTCCTGGATG 533
|||||||||||| || |||| | | | || ||| ||||| || ||||||||| |||| |
Sbjct 837 GATTGCTGTCAAGCGTTTCACTAGAATGGCCTGGCCTGATGCA-CGACAGTTCTTGGAGG 895
Query 534 AAGCTAAAG-CTGTTGG-GAGCTTGAGGAGTGATAGATTAGCGAATCTGA-TTGGATGTT 590
|||| | | | ||||| ||| || ||||||| ||| | || ||| | | | || ||||
Sbjct 896 AAGC-GAGGTCGGTTGGTCAGC-TGCGGAGTGAGAGAATGGCCAAT-TTACTCGGGTGTT 952
Query 591 GCTTTGAAGGAGAAGAGAGATTACTAGTTGCTGAGTTTATGCCTCATGAAACGCTTG-CA 649
||| ||||| || ||||| ||||| || || |||||||||||| ||||||| || | ||
Sbjct 953 GCTGCGAAGGTGACGAGAGGTTACTCGTAGCCGAGTTTATGCCTAATGAAACACTAGCCA 1012
Query 650 AAGCATCTTTTCCACTGGGAGAA--TAATCCGATGAAATGGGCGATGAGATTAAGAGTTG 707
|| || ||||| |||||||| || || || ||||||||| | ||||| | | ||||
Sbjct 1013 AA-CACCTTTTTCACTGGGA-AACCCAA-CCTATGAAATGGACTATGAGGCTGCGGGTTG 1069
Query 708 CATTGTGTTTAGCACAAGCAT-TGGAATATTGTAGTAATAAAGGGAG-AGCT-TTGTATC 764
|| | | |||||||||| | | ||||| || | | ||||| | | || || || |
Sbjct 1070 TTTTATATCTAGCACAAGC-TCTTGAATACTGCACCAGCAAAGGCCGTA-CTCTT-TACC 1126
Query 765 ATGATCTCAATGCTTACAGGGTTTTGTTTGACAAGG-ATGGGAATCCCAG-GTTGTCTTG 822
| || |||||||||||| ||||||||||||| ||| || | ||||| || || |||
Sbjct 1127 ACGACCTCAATGCTTACCGGGTTTTGTTTGATGAGGAAT-GCAATCCAAGACTT-TCTAC 1184
Query 823 TTTTGGAC-TCATGAAAAATAG-CAGAGATGGGAAGAGTTATAGCAC-AAACTTGGCATT 879
|||||| | | ||||| ||||| | | || || || ||||| ||||| || ||| || ||
Sbjct 1185 TTTTGG-CTTGATGAAGAATAGTC-GGGACGGAAAAAGTTACAGCACTAATCTT-GC-TT 1240
Query 880 T-ACTCCTCCAGAGTATTTGCGAAC-GGGTAGAGTTACACCAGAGAGTGTTG-TATTCAG 936
| || ||||| || ||| | ||||| ||| ||| |||| |||||||||| || ||| |||
Sbjct 1241 TCACCCCTCCCGAATATCTACGAACTGGG-AGAATTACTCCAGAGAGTG-TGATATACAG 1298
Query 937 TTTTGGAAC-CGTTTTGCTCGATC-TCATGAGTGGAAAACATATTCCACCGAGTCATGCG 994
||||| || | || |||| |||| || | || ||||||||||| || || || |||||
Sbjct 1299 CTTTGGCACTC-TTCTGCTTGATCTTC-TCAGCGGAAAACATATACCTCCTAGCCATGCC 1356
Query 995 CTTGACCTAATCAGAGGCAAGAACTGTGCA-ATGTTAA-TGGATTC-TGCTCTCGA-GGG 1050
||||| || || |||| | |||| | | || | ||| | ||||| ||| || || |||
Sbjct 1357 CTTGATCTGATTAGAGAC-AGAAATCTTCAGACACTAACT-GATTCTTGC-CTAGATGGG 1413
Query 1051 TC-A-TTTCTCAAACGAAGACGGAACTGAGCTAGTACGCTTAGCCACACGTTGTCTGCAG 1108
| | ||||| | | | || || || |||||||||||| | || | |||||||| |||
Sbjct 1414 -CAATTTTCTGATA-G-TGATGGCACAGAGCTAGTACGCCTGGCTTCTCGTTGTCTTCAG 1470
Query 1109 TATGAAGCTCGAGAAAGACCAAATGTGAAATCTCTCGTGACTTCACTTGTCA-CACTCCA 1167
||||||||||| || | ||||| ||||||| | |||||| | |||| || | || ||
Sbjct 1471 TATGAAGCTCGTGAGCGGCCAAACACGAAATCTTTGGTGACTGC-CTTGACACCTCTTCA 1529
Query 1168 GAAGGA-ATCTGATGTAGCTTCCT-ACGTTCTTATGGGTATACCCCATGAAACCGAGGCT 1225
||||| | | || || | | || | ||||| |||||| || || | | | | | |
Sbjct 1530 AAAGGACA-CAGAGGTCCCAT-CTCATGTTCTAATGGGTCTA--CC-T--CA-C-A-G-T 1578
Query 1226 GAAGAAGAGTCTCCGCTTTCTTTGACACCCT-TTGGTGATGCATGCTT-AAG-AGTGGAT 1282
| | ||||| | | || || | |||| ||||||| || || || ||| || |||
Sbjct 1579 G--GTTCAGTCT---C-TCCTCTGTC-CCCTCTTGGTGAGGCTTG-TTCAAGAAG-GGAC 1629
Query 1283 CTTACAGCCATACAGGAAATACTCAG-TAAGA-TTGGATACAAGGATGATGAAGGAATTG 1340
|| || || || | || || || | ||| | | |||||||| || || || || |
Sbjct 1630 CTGACTGCTATGCTTGAGAT-CTTGGATAA-ACTAGGATACAAAGACGACGAGGGTGTCA 1687
Query 1341 CCAATGAGCTCTCGTTTCAAATGTGGACCA-ATCAGATGCAGGAATCTCTCAATTCGAAG 1399
|||||||||||||||||||||||||||| | | |||||||| || ||| | || || |||
Sbjct 1688 CCAATGAGCTCTCGTTTCAAATGTGGAC-AGACCAGATGCAAGAGTCTTTGAACTCAAAG 1746
Query 1400 AAGCAAGG 1407
||| ||||
Sbjct 1747 AAG-AAGG 1753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71800111825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5