BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54040.1
Length=961
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485800 jgi|Araly1|485800|fgenesh2_kg.5__1792__AT3G54040.1 1086 0.0
> Ahg485800 jgi|Araly1|485800|fgenesh2_kg.5__1792__AT3G54040.1
Length=864
Score = 1086 bits (588), Expect = 0.0
Identities = 803/900 (89%), Gaps = 42/900 (5%)
Strand=Plus/Plus
Query 1 AACATATACGCGTCCTATTTCCACGTTCTCTCTATATTACAT-TTTTCCTTGAAAACATC 59
||||||||||||||||||||||||||||||||||||| || | || |||| |||||||
Sbjct 1 AACATATACGCGTCCTATTTCCACGTTCTCTCTATATAAC-TCTTCTCCTAGAAAACA-- 57
Query 60 TCGAGGTTCAAAATCTTTAACCCCTACAAATCaagaaaaggagacagaggagaagagaga 119
|| | | ||||||||||| ||| | | |||||||||| || | |||||
Sbjct 58 TC-AAG---AAAATCTTTAA-CCC--C---T--------GGAGACAGAGAAG-A-AGAGA 97
Query 120 aaagaaaaacgcagaaaCAATGTCTTTTTCTTCCCTCAAATTGCCAATCTTTCTCATTCT 179
||||||| || ||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 98 AAAGAAATACCCAGAATCAATGTCTTATTCTTCCCTCAAATTGCCAATCTTTCTCATTCT 157
Query 180 CTCAAGTCTTCTCCATGCGGC-TATAGGGGAAAACATTGTTTGCGAGAATCTGCCAACAA 238
|||| ||||||||||||||| | |||||||||||||| | |||||||||||||||||||
Sbjct 158 CTCATCTCTTCTCCATGCGGCGT-TAGGGGAAAACATTATATGCGAGAATCTGCCAACAA 216
Query 239 ATATGTGCTCGTTCTCAATATCCGCTTCCGGGAAAAGATGTATATTGGAGACGGCTAATG 298
||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 217 CTATGTGCGCGTTCTCAATATCTGCTTCCGGTAAAAGATGTATATTGGAGACGGCTAATG 276
Query 299 TCGCCGGAGAATTCACTTGCCGCACTTCCGCAGTGGACGTGGAAGGGATTGTAAACCACG 358
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 277 TCGCCGGAGAATTCACTTGCCGGACTTCCGCAGTGGACGTGGAAGGGATTGTAAACCACG 336
Query 359 TGGAGACCGACGAGTGCGTTTCCGCTTGTGGGGTTGATCGGAAAACCGTAGGGATCTCGT 418
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 337 TGGAGACCGACGAGTGCGTTGCCGCTTGTGGGGTTGATCGGAAAACCGTAGGAATCTCGT 396
Query 419 CAGACTCCTTGATGGAGGCAGG-TTTCGCCGCTAAGCTTTGCTCATCCGCTTGCTTGGAC 477
| ||||| |||||||| ||||| ||| |||||||||||||||||||| || |||||| ||
Sbjct 397 CCGACTCATTGATGGAAGCAGGATTT-GCCGCTAAGCTTTGCTCATCTGCCTGCTTGAAC 455
Query 478 TATTGCCCTAACATTCTTGATCTCTATTTCAACCTCGCCGCCGGTGAAGGTGCATTTTTA 537
| |||||||||||||||||||||||||||||| || ||||| |||||||||| |||||||
Sbjct 456 TTTTGCCCTAACATTCTTGATCTCTATTTCAATCTAGCCGCTGGTGAAGGTGTATTTTTA 515
Query 538 CCTGATCTATGTGATGCTCAACGGATGAATCCCCAGCGTTCGATGATGGAATTCATCAGC 597
|||||||| || |||||||||||||||||||| || ||||||||| ||||| || |||||
Sbjct 516 CCTGATCTCTGCGATGCTCAACGGATGAATCCTCACCGTTCGATGTTGGAAATCCTCAGC 575
Query 598 TCCGGCGCCGCACCAGGCCCTGTCTCCGAAATTGCACCAGGCCCCACCTCCGAAGAAGTC 657
|||||||| || ||||||||||| ||||| ||||||||||||| ||||||||||| |||
Sbjct 576 TCCGGCGCTGCGCCAGGCCCTGTTTCCGAGGTTGCACCAGGCCCAACCTCCGAAGATGTC 635
Query 658 TCATCTCCTGCTCTAGCTCCGGCTTCTATGTAAAATGTTCATTAATTCCACATGTGT-T- 715
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 636 TCATCTCCTGCTCTAGCTCCGGCGTCTATGTAAAATGTTCATTAATTCCACATGTGTGTC 695
Query 716 -TAATACTTTATATTTATATTTTCGATTGATGATGATCCATATATAATGGACCGTATCTT 774
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 696 ATAATACTTTATATTAATATTTTCGATTGATGATG-TCCATATATAATGGACCGTATCTT 754
Query 775 ACATTTTCTATGATTTGATACGGATATCATCAATTGATTCATATGAAAGAAGAAGGATAC 834
||| ||||||||||||||| | |||||||||||| || | | || | || ||||||
Sbjct 755 ACACTTTCTATGATTTGATGCCGATATCATCAAT--AT--A-A-GAG-G--GA-GGATAC 804
Query 835 AGAGTGAGCTTGATTTTTGTTTATGTTTCTTAATCAACATTTCACTGTATAATAACAACT 894
|||||| | ||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 805 AGAGTGGGTTTGATTTTTGTTTCTGTTTCATAATCAACATTTCACTGTATAATAACAACT 864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35683050312
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5