BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54060.1
Length=1725
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485803 jgi|Araly1|485803|fgenesh2_kg.5__1795__AT3G54060.1 2041 0.0
> Ahg485803 jgi|Araly1|485803|fgenesh2_kg.5__1795__AT3G54060.1
Length=1742
Score = 2041 bits (1105), Expect = 0.0
Identities = 1558/1760 (89%), Gaps = 97/1760 (6%)
Strand=Plus/Plus
Query 15 TTCTTCAGGTCTTTTCAACTTCG--------CTCTCTCTCT-TTGCTTCATATTCGTGTT 65
||||||||||||||||||||||| |||||||||| ||| |||| ||||||||
Sbjct 1 TTCTTCAGGTCTTTTCAACTTCGCTCTCTCCCTCTCTCTCTATTGAATCATCTTCGTGTT 60
Query 66 AATTAGGGTTTTCGATTAATTCAGAAGACACAGC---AATGGGGAAATCGAGCAGATCTA 122
|| |||||||||||||| | |||||||||| ||| ||||||||||||||||||||| |
Sbjct 61 AACTAGGGTTTTCGATTTA-TCAGAAGACATAGCAATAATGGGGAAATCGAGCAGATCGA 119
Query 123 AAGGATCGAATCTCATCGGCAAAGGTGAAGTTACCCCAACGCAAGTTGCTTTTATCGTCG 182
||||||||| | ||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 120 AAGGATCGAGTATCATCGGGAAAGGTGAAGTTACCCCAACGCAAATTGCTTTTATCGTCG 179
Query 183 ATCGCTATCTCCACGACAATCGATTCTCAGAAACTCGAGCCCTCTTTAGATCTGAAGCTT 242
||||||||||| ||||||||||||| |||||||| ||| ||||||||||||||||||||
Sbjct 180 ATCGCTATCTCTACGACAATCGATTTTCAGAAACCCGAAACCTCTTTAGATCTGAAGCTT 239
Query 243 CTTCTCTCATCTCTGATTCCCCAATTCG-CAATGTTCCGAATAGTTTGATGACTCTTGAT 301
|||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 240 CTTCTCTCATCTCTAATTCCCCAATTCGCCAA-GTTCCGAATAGTTTGATGACTCTTGAT 298
Query 302 GCTATGTTGAACCATTACGTATCTCTAAAGAAGCAGAAAGTGAGTCTGGATCAAGAGAAA 361
|||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||
Sbjct 299 GCTATGTTGAACCATTACGTATCTTTAAAGGAGCAGAAAGTGAGTCTCGATCAAGAGAAA 358
Query 362 CTGAAATTGGATCAAGAGAAAATTAGGGTTCAAAATCTGTTGCAGGGGATGGAAAATGTG 421
||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 359 GTGAAATTGGATCAGGAAAAAATTAGGGTTCAAAATCTGTTGCAGGGGATGCAAAATGTG 418
Query 422 ATGAATACTTACAACGCTAGCCTCACCG---------CTCCTCCTCCGGCTTCAGCTCCA 472
|||||| | ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 419 ATGAATTCGTACAACGCTAGCCTCACCGCTCCTCCTCCTCCTCCTCCGGCTTCAGCTCCG 478
Query 473 ACTTCTCAACAGAAAAATC-ACAGTATCTCTTCTTCAGGCTTATCTCAGTACAACACACT 531
|||| ||||||| |||||| |||| | ||||||||||||||| |||||||||||||||
Sbjct 479 ACTTTTCAACAG-AAAATCAACAGCGTATCTTCTTCAGGCTTAACTCAGTACAACACACC 537
Query 532 AAATGGTATGTCAGTATCATTGCTTGGTAACAAAAGAGTAGATTTTGGGAATTTTTCCAC 591
||||| |||||||||||||||||| |||||||||||||| |||||| |||||||||||||
Sbjct 538 AAATGTTATGTCAGTATCATTGCTAGGTAACAAAAGAGTCGATTTTCGGAATTTTTCCAC 597
Query 592 ACCTTCGACGAGTCAGTCTATAACTGGGAAACGAAAAGGTCCTGAAGTTTCTGTAACAGC 651
||||||||| ||||||||||| || |||||| |||||||||||||||||||||||| |||
Sbjct 598 ACCTTCGACCAGTCAGTCTATTACCGGGAAAAGAAAAGGTCCTGAAGTTTCTGTAAGAGC 657
Query 652 TCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGGGACTAATAAGTTGC-CAC 710
|||||||||| |||||||| | |||| ||| ||||||||||||||||||| | | |||
Sbjct 658 TCCTCCGGTAACTAGGAAAGCGCGGATTTCTACAGCAACTGGGACTAATAAGAT-CTCAC 716
Query 711 AAGCTGATAAAGCAGCTAACAA--T-T--T--C--A---CATCTGAAACACTAGCAG-TG 757
|||||||||||||||||||||| | | | | | ||||||||||| |||| | ||
Sbjct 717 AAGCTGATAAAGCAGCTAACAATTTCTCATCCCAAACCCCATCTGAAACATTAGC-GTTG 775
Query 758 GCTAAAAACTCTGCAAGTAATGAGTTGATTGGTAATGGGTCAAGTGTGGTGAAGTGTTTG 817
|| ||||||||||||| |||||| ||||||||| |||||||||||||||||||||| |||
Sbjct 776 GCCAAAAACTCTGCAACTAATGAATTGATTGGTCATGGGTCAAGTGTGGTGAAGTGCTTG 835
Query 818 TTCAATAAGGCTGATTCGTCTGTTCCTACTAGTTCAACATGCTTTAGGACACCACAAAAA 877
||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||
Sbjct 836 TTCAATAAGGCTGATTCCTCAGTTCCTACTAGTTCAACATGCCTTAGGACACCACAAAAA 895
Query 878 CATGCTTCTTCTGGGAGTGATAAGTCCAACAGTTCCCAGAAAGAAGTTACTCCTACAAAT 937
||||||||| ||||||||||||||||||||||| ||||||||||||||||| | | |
Sbjct 896 CATGCTTCTCCTGGGAGTGATAAGTCCAACAGTCCCCAGAAAGAAGTTACT-C--C---T 949
Query 938 ACAAACTGCACAATTGTTACAAAGGAGAGATTCACAATCAGCCCTCTCAAGCAAATTACT 997
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 950 ACAAACTGCACAATTGTTACAAAGGAGAGATTCACAGTCAGTCCTCTCAAGCAAATTACT 1009
Query 998 TCTTATTCAGTGGAAAGAAGCCATCTTATTTCTTTTTCTTCACCGGTCAAGTCTAACCTG 1057
|||||||||||||||||||||||||| ||||| || ||| ||||||||||||||||||
Sbjct 1010 TCTTATTCAGTGGAAAGAAGCCATCTAATTTC---TTGTTCGCCGGTCAAGTCTAACCTG 1066
Query 1058 AAGATGTCAAATAAGAGAGACCATGTGAAAGGAAAGCTCAACTTTGATGACACTGACACA 1117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1067 AAGATGTCAAATAAGAGAGACCATGTGAAAGGAAAGCTCAACTTTGATGACACTGATACA 1126
Query 1118 GAAACGTGCTTAGAGGCACCTGCCACTGCAGATTTAGTTTCAACTTCTCCATCTGGGTCT 1177
|||| ||||||||||||||||||| || ||||||||||||||||||||||||| ||||||
Sbjct 1127 GAAATGTGCTTAGAGGCACCTGCCTCTACAGATTTAGTTTCAACTTCTCCATCCGGGTCT 1186
Query 1178 GAGCCAGAAGTTGATTTGTTTGACATGGACTTTTCTAATCTGGATTTCT----------C 1227
||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1187 GAGCCAGAAGTTGATTTATTTGACATGGACTTTTCTAATCTGGATTTCTTGGGTGAAAAC 1246
Query 1228 -----------GGAGCTACTAGTTGATTTCGATCTTGGTTGTGAAGGAAGTGCAAATCAT 1276
|||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1247 TTCACACTCTCGGAGCTACTAGTTGATTTCGATCTTGATTGTGAAGGAAGTACAAATCAT 1306
Query 1277 TGCTTGTCACTGACCCCAAATCAACCCACTCAAACTGTTTCAGGGTCGTCTCCTGAATCA 1336
|||||||||| ||||||||||||||||| | ||||||||||||| || ||||||||||||
Sbjct 1307 TGCTTGTCACAGACCCCAAATCAACCCATTGAAACTGTTTCAGGCTCCTCTCCTGAATCA 1366
Query 1337 GGGGATTG-TAATCTCGAGTCTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGA 1395
|||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1367 GGGGAT-GCTAATCTCGAGTCTGACCAGGCCTTTTTGGAATATACATCAACCGTGACTGA 1425
Query 1396 TGTGATTCAA---ATTT-CA--AG-A-T---G-TATTGATCCTCTCTCTAACTCGAGCCA 1443
||||||||| | || || | | | |||||||| |||| |||||||||||||
Sbjct 1426 AGTGATTCAAGGGAAAGACATGAGCAGTCAAGATATTGATCATCTCCCTAACTCGAGCCA 1485
Query 1444 TTCTTCTCTTAACACAGACAAGATTTGAAAGCAA-AGAGTGACATGACAGACAATTGACT 1502
||||||||||||||||| |||| |||||| | || |||||||||||||||||||||||||
Sbjct 1486 TTCTTCTCTTAACACAGCCAAGGTTTGAAGG-AAGAGAGTGACATGACAGACAATTGACT 1544
Query 1503 GATTTTGAAGACTATGATTGACTCCAAGACCACCAATGCAAGATCCTCTG-TTTTCTCCT 1561
|||||||||||||| ||||||||||||||||||||||||| |||||||| |||| |||
Sbjct 1545 GATTTTGAAGACTACGATTGACTCCAAGACCACCAATGCACGATCCTCTACTTTTG-CCT 1603
Query 1562 TACTATGCTGCT-AGTGCTTATTCTTGTAATGATCTGTGAAATATGAAAAGGCTATCCCA 1620
||||||||||| |||||| || ||||||||| ||||||||||||||||| ||||||||
Sbjct 1604 AACTATGCTGCTCAGTGCTAATACTTGTAATGGTCTGTGAAATATGAAAATGCTATCCCC 1663
Query 1621 TAACGTA-GCTTATAATTAACTAGTAT-TA---CATGTAGGTGTATAAATTAAACTTGGT 1675
||| || ||| |||||||||||||| || ||||||| ||||||||||||||||||
Sbjct 1664 TAA-GTTCGCTCCTAATTAACTAGTATCTATTACATGTAGTTGTATAAATTAAACTTGGA 1722
Query 1676 TTTTTGGTCTATAGTTTTAA 1695
|||||||||||| |||||||
Sbjct 1723 TTTTTGGTCTATTGTTTTAA 1742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64715326255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5