BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54070.1
Length=1725
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354764 jgi|Araly1|354764|fgenesh1_pg.C_scaffold_7001937 702 0.0
> Ahg354764 jgi|Araly1|354764|fgenesh1_pg.C_scaffold_7001937
Length=1935
Score = 702 bits (380), Expect = 0.0
Identities = 763/941 (81%), Gaps = 54/941 (6%)
Strand=Plus/Plus
Query 771 GCTACTCTTTGATGCTGCGGAATTGGGAAATGTTGAGATTTTAGTTATTCTTATTCGTTC 830
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 999 GCTACTCTTTGATGCTGCGGAACTGGGAAATGTTGAGTTTTTAGTTATTCTTATTCGTTC 1058
Query 831 TCATCTAGATCTGCTATGGATAGTTGATAATAA-TAACCGAACTTTATTCCATGTTGCTG 889
| | | |||||| |||||| ||||||||| || | |||| |||||| || ||||||
Sbjct 1059 TTACCCAGATCTAATATGGAAAGTTGATAACAAGT-GTCGAAGTTTATTTCACATTGCTG 1117
Query 890 CTTTATATCGTCATGAAAATATCTTCAGCCTAATCTATGAACTTGGAGGCATCAAGGAT- 948
|||||||||| ||||||| || |||| ||||||||||||| || ||||||||||||
Sbjct 1118 CTTTATATCGCCATGAAAGCATATTCAAAATAATCTATGAACTCGGGGGCATCAAGGATC 1177
Query 949 -TTGATAGCATCTTATAAAGAAAAACAATCTAAAGAT-ACTTTGTTGCATCTTGTGGCAC 1006
|| || ||||||||| |||| | |||| ||| || || ||| ||||| |||| ||||
Sbjct 1178 ATT--TAACATCTTATATAGAAGATGAATCCAAAAATAAC-TTGCTGCATTTTGTTGCAC 1234
Query 1007 GGTTACCACCTATGAATCGTCAACAAGTTGGATCAGGAGCAGCACTTCATATGCAAAAAG 1066
| ||||||||| ||||| | ||| |||| |||||||||||||||||| ||||||| ||
Sbjct 1235 GTTTACCACCTCCAAATCGGCTACATGTTGTATCAGGAGCAGCACTTCAGATGCAAAGAG 1294
Query 1067 AGCTCCTTTGGTTCAAGGCTGTTAAAGAAATAGTTCCTCGTTCATACATCGAAACCAAAA 1126
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||
Sbjct 1295 AGCTCCTTTGGTTCAAGGCTGTTAAAGAGATAGTTCCTCGTTCATACATC-AAAACAAAA 1353
Query 1127 ACACTAAG--GGCGAACTAGCGCATGATATATTCACGGAACAACACGAAAACTTACGCAA 1184
| || ||| ||| | ||||||||||| ||||||| || |||||||||| ||||||||
Sbjct 1354 A-ACAAAGATGGCCAGGTAGCGCATGATCTATTCACAAAAGAACACGAAAATTTACGCAA 1412
Query 1185 AGAAGGAGAGAGATGGATGAAAGAAACCGCGACAGCATGTATGCTCGGAGCAACGCTGAT 1244
||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1413 AGAAGGAGAGAAATGGATGAAAGAAACTGCGACAGCATGTATGCTCGGGGCAACGCTGAT 1472
Query 1245 AGCAACTGTGGTCTTTGCAGCAGCCATTACTATACCAGGTGGAAATGATGATTCAGGTGA 1304
|||||||||||||||||||||| || ||||| |||| ||||| | ||| | | ||
Sbjct 1473 AGCAACTGTGGTCTTTGCAGCAACCTTTACTCTACCGGGTGGCACTGAC-A--C---TG- 1525
Query 1305 CAAAGCAAATACGTTGGGCTTCCCA-AATTTTAGAAAG-AGATTATTGTTCGAT-ATATT 1361
| | ||| ||||||||| ||||| ||| | || |||| |||| | |||||
Sbjct 1526 ----G-AT-TACC--GGGCTTCCCTCAATTT-AGAGGGGAG-TTATGGTTC-ACCATATT 1574
Query 1362 TACCTTATCAGATTCGGTTGCCCTCTTCTCATC-GATGAT-GTCTATCGTGATATTTTTA 1419
|| |||||||||||||| ||| ||||||||||| | |||| | |||| ||| |||| ||
Sbjct 1575 TATCTTATCAGATTCGGCTGCGCTCTTCTCATCTG-TGATAG-CTATTGTGTTATTCTTG 1632
Query 1420 TCGATCTTCACTTCTCGGTACGCAGAAGAGGATTTTCGTTATGAT-TTACCAACAAAGCT 1478
|||||||| |||||||| || |||||||| || || || | || ||||| ||||||||
Sbjct 1633 TCGATCTTGACTTCTCGATATGCAGAAGATGACTTCCGG-ACGAAGTTACCGACAAAGCT 1691
Query 1479 TATGTTCGGACTTTCGGCATTGTTTATCTCGATCATCTCTATGATTCTTGCCTTCACCTT 1538
||||| ||||||| |||||||||||||| || | | ||||| ||||||||||||||
Sbjct 1692 AATGTTGGGACTTTTTGCATTGTTTATCTCAATAAACACTATGGTTCTTGCCTTCACCG- 1750
Query 1539 C-TCGATGATCTTGATCCGT-GT-T-GAAAAAGCT-TCCTTGAGCTTAGTCCTCATC-TC 1592
| || ||||| |||||||| | | || || || | | ||| ||| |||||||| |
Sbjct 1751 CGTCAATGATATTGATCCGCAGAGTCGATGAACCTGTG-TGGAGATTAATCCTCATCGT- 1808
Query 1593 TTGCCTTGCTTCTCTCACGGCTCTCACGTTTGCTTACTTGTATTTTCACCTTTGGTTTA- 1651
||||||| |||||||| | ||| |||| ||||||| ||| || || | ||||||||||
Sbjct 1809 TTGCCTTTCTTCTCTCGCCGCTATCACATTTGCTTTGTTGCATGTTAAGCTTTGGTTTAT 1868
Query 1652 A-CACTCTACGCTCAGTC-TATATTTCTATGTTTCTCTTCC 1690
| |||| | ||||||| | ||| |||| | |||||||||||
Sbjct 1869 AACACT-T-CGCTCAG-CATATTTTTCAAAGTTTCTCTTCC 1906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64715326255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5