BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54080.1
Length=1756
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348499 jgi|Araly1|348499|fgenesh1_pg.C_scaffold_5001891 1389 0.0
Ahg317721 jgi|Araly1|317721|fgenesh1_pm.C_scaffold_3000737 71.3 2e-11
> Ahg348499 jgi|Araly1|348499|fgenesh1_pg.C_scaffold_5001891
Length=1311
Score = 1389 bits (752), Expect = 0.0
Identities = 956/1052 (91%), Gaps = 24/1052 (2%)
Strand=Plus/Plus
Query 131 ATGGCGAGCTTCATTCTCTCCAGGTCATTACTCGTTCTACTCCTG-TCTCTCACCGCATT 189
||||||||||||||||||||||||||| | || |||| ||| || | | ||| | ||||
Sbjct 1 ATGGCGAGCTTCATTCTCTCCAGGTCACTCCTGGTTCCGCTCTTGAT-TGTCATCTCATT 59
Query 190 ACTCTCCAGCATCTCGATTTCGGAAGCT-ACCTCATCGTTCTCGTTCACAAGCTCCGGTA 248
| |||| ||| | |||||||||||| | |||||||||| |||||||| |||||||
Sbjct 60 GTTTTCCATAATCACCATTTCGGAAGCTGA-AACATCGTTCTCCTTCACAAGATCCGGTA 118
Query 249 AAAATGCGAGCTTTGAGTCCGAAGACTTTGCCCTGTACGGCGACGCTAAGCTCGTCGACG 308
|||||||||||||||||||||| |||||||||||||||||| | ||||||||||| ||||
Sbjct 119 AAAATGCGAGCTTTGAGTCCGACGACTTTGCCCTGTACGGCAAAGCTAAGCTCGTGGACG 178
Query 309 GCGGATCTTCGATTCAGCTGACTGACTCAGTGAGTCACGGTGGTGGGCGAGTCATCTATA 368
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 179 GCGGATCTTCGATTCAGCTGACTGACTCAGTGAGTCACGGTGGTGGGCGAGTCATCTACA 238
Query 369 AGAAACCCATTGAGTCCA-TGAACAATATAAAATTCGAGTATTTCACCGGATTCTCTACT 427
|||||||||||||||| | |||| ||||||||||||||||||||| ||||||||||||||
Sbjct 239 AGAAACCCATTGAGTC-AGTGAAGAATATAAAATTCGAGTATTTCGCCGGATTCTCTACT 297
Query 428 TTCTTCTCTTTCTCGATTTCTCCTAGTCGTGGTGGGAGACTCGGATTTGTAGTGTTTCCT 487
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 298 TTCTTCTCTTTCTCGATTTCTCCTAATCGTGGTGGGAGACTCGGATTTGTAGTGTTTCCT 357
Query 488 GTTAATGAAACGTTTGATCACTCTTTATTCCAAGTAAAGTTCGATACTTTTGACAGTTTC 547
||||||||||| || |||||||||||||||||||||||||||||||||| ||| | | ||
Sbjct 358 GTTAATGAAACATTCGATCACTCTTTATTCCAAGTAAAGTTCGATACTTGTGAAAATCTC 417
Query 548 ACCCAAATTGGAGATTCTAATGTCGCGGTGATTGTTGATGGTGCTACGGTGTCTGAGAGG 607
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 418 ACCCAAATTGGAGATTCTTATGTCGCGGTGATTGTTGATGGTGCTACGGTTTCTGAGAGG 477
Query 608 ATTCGCAATTTCACGATCGCAAACTTGGAGAAGACGGAGAAGGTTTTGTTGTACGCTTGG 667
|||| ||| |||||||| ||||||||||| |||||||||| |||||||||||||||||||
Sbjct 478 ATTCACAACTTCACGATTGCAAACTTGGATAAGACGGAGATGGTTTTGTTGTACGCTTGG 537
Query 668 ATTAATTACCAAGCTGGTGGCAAGTTCTTAGAAGTCCGGTTAAGTAAATCTAAAAGCTTT 727
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 538 ATTAATTACCAAGCTGGTGGCAAGTTCTTAGAAGTCCGGTTAAGCAAATCAAAAAGCTTT 597
Query 728 GAATCTGTTCTTCCTCTGATGTTTGATCAGATTGATTTGTCACAAATGTTGAGAGATGAG 787
||||||||||||||||| |||||||||| ||| ||||||||| ||||||||| | |||||
Sbjct 598 GAATCTGTTCTTCCTCTCATGTTTGATCGGATCGATTTGTCAGAAATGTTGAAACATGAG 657
Query 788 GATGAGTTCATGGTTGCTGTGAATTCGTATAGTGGGAATGTAAATCTTCATTCTTGGAGT 847
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 658 GATGAGTTCATGGTTGCTGTGAATTCTTATAGTGGGAATGTAAATCTTCATTCTTGGAGC 717
Query 848 TTAGAAGTGAGACACTCCGAGTATGAGCACTCTTGGGCGCCGGTGCTTTTGGAGGAACAA 907
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTAGAAGTGAGACACCCCGAGTATGAGCACTCTTGGGCGCCGGTGCTTTTGGAGGAACAA 777
Query 908 CTTAGAAAAGAGGAACAACTTAGAAAAGAGGAGGCTGCGAAGAAGAGGACAAGTGATAGG 967
|||||||||||||| | | ||||||||||||| | ||||||||||
Sbjct 778 CTTAGAAAAGAGGA--------G----G------CTGCGAAGAAGAGAAGAAGTGATAGG 819
Query 968 ATGTGGGAGGTTGTCACTTGCTTCGTCATGACCTTTGGATCAACAGGGCTTGTGTTCTTT 1027
||| |||| |||| |||||| | ||||||||||||||||| || || |||||||||||
Sbjct 820 ATGAGGGATATTGTGACTTGCGTAGTCATGACCTTTGGATCTACTGGTCTTGTGTTCTTC 879
Query 1028 GCCATGATGCATATATATGCAGCTTTCAAAAGGAACAATCTTGCGATGGTGATGCAGGAG 1087
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 880 GCCATGATGCATATATATGCAGCTTTCAAAAGGAACAATCTTGCCATGGTGATGCAGGAA 939
Query 1088 GAATGTGGGATCAAGACCAAGGAGTTTGGGTATAAGAAGATGGAGAAAATGGAAGTTGTG 1147
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 940 GAATGTGGGATCAAGACCAAGGAGTTTGAGTATGAGAAGATGGAGAAAATGGAAGTTGTG 999
Query 1148 ACGAGTAATGCTGATGCGAAACAAGAAAGGAA 1179
| |||||| |||||| |||||||||||||||
Sbjct 1000 ATGAGTAAAACTGATGGGAAACAAGAAAGGAA 1031
Score = 435 bits (235), Expect = 7e-121
Identities = 253/262 (97%), Gaps = 0/262 (0%)
Strand=Plus/Plus
Query 1490 TTTATCTTCATCTACACAAAATCTTCAACCGGAGATAAGCTTCAAGACGATGACTGCTGT 1549
|||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||
Sbjct 1032 TTTATCTTCATCTACACAAAATCTTCAACCGGAGATGAGTTTCAAGATGATGACTGCTGT 1091
Query 1550 GTTAATGAGCATGAGGGGTAGCCTCATGTACTGGCAGGCATGGATCAGACCAATGATTTG 1609
||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 1092 GTTAATGAGCATGAGGGGTAGTCTCATGTACTGGCAGGCATGGATTAGACCGATGATTTG 1151
Query 1610 GCCTTTGGGAGAGTTTCTTCTATCGGTTTGGTGGAGTTCTCCGAGTGTCCATCCTCTTGG 1669
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1152 GCCTTTGGGAGAGTTTCTTCTACCAGTTTGGTGGAGTTCTCCGAGTGTCCATCCTCTTGG 1211
Query 1670 AACAAGGAAACGGTCTTCGTTGAGGATTGCCAGTGCATTTGCAAAGAGCAGCAGACCTTT 1729
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1212 AACAAGGAAACGGTCTTCGTTGAGGATTGCCAGTGCATTTGCAAAGAGCAGCAGGCCTTT 1271
Query 1730 TAACAATGTCCAGAAGCCCATT 1751
||||||||||||||||||||||
Sbjct 1272 TAACAATGTCCAGAAGCCCATT 1293
> Ahg317721 jgi|Araly1|317721|fgenesh1_pm.C_scaffold_3000737
Length=942
Score = 71.3 bits (38), Expect = 2e-11
Identities = 58/67 (87%), Gaps = 4/67 (6%)
Strand=Plus/Plus
Query 314 TCTTCGATTCAGCTGACTGACTCAGTGAGTCACG-GTGGTGGG-CGAGTCATCTATAAGA 371
|||||||||||||||||||||||||||||||| | | | ||| |||||| | |||| ||
Sbjct 67 TCTTCGATTCAGCTGACTGACTCAGTGAGTCA-GAGCGA-GGGACGAGTCTTTTATAGGA 124
Query 372 AACCCAT 378
|||||||
Sbjct 125 AACCCAT 131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65896123850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5