BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54090.1
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485806 jgi|Araly1|485806|fgenesh2_kg.5__1798__AT3G54090.1 2278 0.0
> Ahg485806 jgi|Araly1|485806|fgenesh2_kg.5__1798__AT3G54090.1
Length=1566
Score = 2278 bits (1233), Expect = 0.0
Identities = 1464/1572 (93%), Gaps = 29/1572 (2%)
Strand=Plus/Plus
Query 22 ATGGCTTCACTTCTTATTTTCCCCCACCTTCACCATTTTGATTCTTCACTGGACCGTAGA 81
|||||||| |||||| |||| || || ||||| ||||||||||||||||| || ||||||
Sbjct 1 ATGGCTTCTCTTCTTCTTTTTCCTCATCTTCATCATTTTGATTCTTCACTAGATCGTAGA 60
Query 82 GAG---GTACTAGTAGTTCGCCATTCA-CAAGCATCAAGGCGATTTCTCACTCCGAAAGC 137
||| ||| ||| || ||| ||||| ||| ||||||||||||| ||||||||| |||
Sbjct 61 GAGATAGTAGTAGGAGCTCGAGATTCACCAA-AATCAAGGCGATTTTTCACTCCGAGAGC 119
Query 138 TTCAATTAATGGCAGCGGAATCACAAACGGAGCTGCAGCGGAAACCACCTCTAAACCTAG 197
||||||||||||| || ||||||||||||||| |||||||||||| || ||||||||||
Sbjct 120 TTCAATTAATGGCGGCAAAATCACAAACGGAGCAGCAGCGGAAACCGCCGCTAAACCTAG 179
Query 198 TCGCAAAGGGAGGAAGAAGAAGCAAACATCGACGGTAATT---G-AG---A-A---AG-A 245
||||||||||||||||||||||||||| |||||||||||| | || | | || |
Sbjct 180 TCGCAAAGGGAGGAAGAAGAAGCAAACCTCGACGGTAATTGAGGAAGATAACACCGAGAA 239
Query 246 -TA-AC-ACCGAGACTGATCCTGAATTGAATCCGGAGTTAGCT-GATTACGACGACGGGA 301
| || |||||||||||||||||||||||||||||||||| | ||||||||||| ||||
Sbjct 240 CGATACTACCGAGACTGATCCTGAATTGAATCCGGAGTTAG-TGGATTACGACGATGGGA 298
Query 302 TCGAGTTTCCGTACGACGATCCGCCTCTTGTGTGTTGCTTCGGAGCTGTACAGAAGGAGT 361
|||||||||| ||||| || |||||||||||||| || |||||||||||||||||||| |
Sbjct 299 TCGAGTTTCCCTACGATGACCCGCCTCTTGTGTGCTGTTTCGGAGCTGTACAGAAGGAAT 358
Query 362 TTGTTCCGGTGGTGCGAGTCCATGATAATCCGATGCATCCTGATATGTACTCGCAGTGGA 421
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 359 TTGTTCCGGTGGTGCGAGTCCATGATAATCCGATGCATCCTGACATGTACTCGCAGTGGA 418
Query 422 AGATGCTACAGTGGGATCCACCGGAGTTTGGGAGAGCTCCGGGAGGTCCGCCGTCGAATG 481
||||| | ||||||||||| |||||||||||| | |||||||||||||||||||||||||
Sbjct 419 AGATGTTGCAGTGGGATCCGCCGGAGTTTGGGCGTGCTCCGGGAGGTCCGCCGTCGAATG 478
Query 482 TGGCGATCTCTCATGTACGGTTAGGTGGGAGAGCTGCGTTTATGGGGAAAGTAGGTGAAG 541
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 479 TGGCGATCTCTCATGTCCGGTTAGGTGGGAGAGCGGCGTTTATGGGGAAAGTCGGTGAAG 538
Query 542 ATGATTTTGGAGATGAGCTTGTTCTGATGATGAATCAGGAGAGAGTTCAGACGAGAGCTG 601
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ATGATTTTGGGGATGAGCTGGTTCTGATGATGAATCAGGAGAGAGTTCAGACGAGAGCTG 598
Query 602 TGAAATTCGATGAGAATTCGAAAACTGCTTGTACTCGTGTCAAGATCAAGTTTAAGGACG 661
| |||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 599 TAAAATTCGATGAGCATTCAAAAACTGCTTGTACTCGCGTCAAGATCAAGTTTAAGGACG 658
Query 662 GGAAAATGATGGCGGAGACTGTGAAAGAACCACCTGAGGACTCGCTAT-TTGCTTCAGAA 720
||||||||| ||||||||| |||||||| || || ||||||||||| | |||||||||||
Sbjct 659 GGAAAATGAAGGCGGAGACGGTGAAAGAGCCGCCGGAGGACTCGCT-TCTTGCTTCAGAA 717
Query 721 CTCAATTTAGCTGTGCTTAAAGAGGCGAGGATTTTTCATTTCAATTCAGAAGTGTTGACG 780
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 718 CTCAATTTAGCTGTGCTTAAAGAGGCTAGGATTTTTCATTTCAATTCAGAAGTGTTAACG 777
Query 781 TCTCCTACAATGCAATCAACTCTTTTTACGGCAATACAATGGTCTAAGAAGTTTGGTGGG 840
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 778 TCTCCTACAATGCAATCAACTCTTTTTACGGCAATACAATGGTCTAAAAAGTTTGGAGGG 837
Query 841 CTTATTTTCTTTGACTTGAATCTCCCATTACCGCTGTGGAGATCGCGCAATGAGACTAGG 900
||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 838 CTTATTTTCTTTGACTTGAATCTTCCATTACCGCTATGGAGATCGCGCAACGAGACTAGG 897
Query 901 AAGTTGATCAAGAAAGCATGGAATGAAGCAAACATCATTGAAGTTTCACAGCAAGAGCTT 960
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 898 AAGTTGATCAAGAAAGCATGGAATGAAGCAAACATTATTGAAGTTTCACAGCAAGAGCTT 957
Query 961 GAGTTTCTACTTGATGAAGATTACTACGAGAGGAGAAGAAACTACACACCACAGTACTTC 1020
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 958 GAGTTTCTACTTGATGAAGATTACTACGAGAGAAGAAGAAACTACACACCACAATACTTT 1017
Query 1021 GCTGAGGATTTTGATCAGACGAAAAACAGAAGAGACTATTACCATTACACACCAGAGGAA 1080
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1018 GCTGAGGATTTTGATCAGACGAAAAACCGAAGAGACTATTACCATTACACACCAGAGGAA 1077
Query 1081 ATCAAGTCATTGTGGCATGACAAGCTGAAGCTACTGGTTGTGACTGATGGAACACTTCGG 1140
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1078 ATCAAGTCATTGTGGCATGACAAGCTGAAGCTATTGGTTGTGACTGACGGAACACTTCGG 1137
Query 1141 CTTCATTACTATACTCCTACTTTTGATGGTGTTGTGATTGGAACAGAAGATGTGCTTATA 1200
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1138 CTTCATTACTATACTCCTACTTTTGATGGAGTTGTGATTGGAACGGAAGATGTGCTTATA 1197
Query 1201 ACTCCTTTCACCTGTGATAGGACAGGTTCTGGTGATGCTGTTGTTGCAGGGATAATGAGA 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 ACTCCTTTCACCTGTGATAGGACAGGTTCTGGTGATGCTGTTGTTGCAGGGATAATGAGA 1257
Query 1261 AAGCTAACAACTTGTCCTGAGATGTTTGAGGATCAGGATGTGATGGAGCGACAGCTCAGG 1320
|||||||||||||||||||||||||||| ||| || |||||| |||||||||||||| ||
Sbjct 1258 AAGCTAACAACTTGTCCTGAGATGTTTGTGGACCAAGATGTGTTGGAGCGACAGCTCCGG 1317
Query 1321 TTTGCAGTTGCTGCTGGGATCATAGCGCAGTGGACAATTGGTGCAGTTAGAGGTTTCCCT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TTTGCAGTTGCTGCTGGGATCATAGCGCAGTGGACAATTGGTGCAGTTAGAGGTTTCCCT 1377
Query 1381 ACTGAAAGCGCGACACAGAATTTGAAAGAACAAGTTTATGTTCCATCAATGTGGTAGAAT 1440
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 ACTGAAAGCGCGACACAAAATTTGAAAGAACAAGTTTATGTTCCATCAATGTGGTAGAAT 1437
Query 1441 AGAAGATGAAGAACTGAACTTGTGTACTCAATGTTTTTGAACAATGTGTGAGTTGTATAC 1500
||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1438 AGAAGATGAAGAACTCAACTTGTATACTCAATGTTTTTGAACAATGTGTGAGATGTATAC 1497
Query 1501 TGATTCAGATTTGTAATCCAGA-GAAATGTACAATCAAtttttttAGTTCAA-TCTGGAT 1558
||||||| |||||||||||| | ||||||||| |||||||||| |||| || |||||||
Sbjct 1498 TGATTCAAATTTGTAATCCA-ATGAAATGTACTATCAATTTTTG-AGTT-AAGTCTGGAT 1554
Query 1559 GGTCCAAGTCTT 1570
||||||||||||
Sbjct 1555 GGTCCAAGTCTT 1566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59496962690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5