BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54110.1
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485808 jgi|Araly1|485808|fgenesh2_kg.5__1800__AT3G54110.1 2037 0.0
> Ahg485808 jgi|Araly1|485808|fgenesh2_kg.5__1800__AT3G54110.1
Length=1236
Score = 2037 bits (1103), Expect = 0.0
Identities = 1196/1240 (96%), Gaps = 9/1240 (1%)
Strand=Plus/Plus
Query 111 CGTAATCGTCGTCGTCCCTCTTCCCGATATTATCTCTTCTCTGTTCTTCGATTTCGAAAC 170
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 CGTCATCGTCGTCGTCCCTCTTCCCGAGATTATCTCTTCTCTGTTCTTCGATTTCGAAAC 60
Query 171 CCTAACCTCCTCTCTT-TAATTCGCGTTTTCTGGATCGAAGATGGTGGCGGCTGGTAAAT 229
||||||||||||| || | ||||||||||||||||||||||||||| || ||||| ||||
Sbjct 61 CCTAACCTCCTCT-TTCTGATTCGCGTTTTCTGGATCGAAGATGGTAGCTGCTGGCAAAT 119
Query 230 CCGACCTTTCCTTGCCCAAAACTTTCGCCTGCAGTGCCTTCGCTGCTTGCGTCGGCGAGG 289
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 120 CCGACCTTTCCTTGCCCAAAACTTTCGCCTGCAGTGCTTTCGCTGCTTGCGTCGGCGAGG 179
Query 290 TATGCACAATTCCATTGGACACTGCTAAAGTTAGGCTTCAGCTCCAAAAGTCTGCTCTTG 349
| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 180 TTTGCACAATTCCATTGGACACTGCTAAAGTTAGGCTTCAACTCCAAAAATCTGCTCTTG 239
Query 350 CTGGTGATGTTACTCTGCCTAAATATCGAGGATTGTTGGGAACTGTTGGTACCATAGCAA 409
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 240 CTGGAGATGTTACTCTGCCTAAATATCGAGGATTATTGGGAACTGTTGGTACCATAGCAA 299
Query 410 GGGAAGAAGGGTTACGTTCACTATGGAAAGGTGTTGTACCTGGATTGCATCGTCAATGCC 469
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGGAAGAAGGTTTACGTTCACTATGGAAAGGTGTTGTACCTGGATTGCATCGTCAATGCC 359
Query 470 TATTTGGAGGTCTTAGGATTGGAATGTATGAGCCGGTGAAAAACTTGTATGTTGGAAAAG 529
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTTTTGGAGGTCTTAGAATTGGAATGTATGAGCCGGTGAAAAACTTGTATGTTGGAAAAG 419
Query 530 ACTTTGTAGGTGATGTTCCATTGAGCAAGAAAATTCTTGCTGGTTTGACAACAGGTGCAC 589
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 420 ACTTTGTAGGTGATGTTCCATTGAGCAAGAAAATACTTGCTGGTTTGACAACAGGTGCAC 479
Query 590 TGGGTATCATGGTAGCAAATCCCACTGATCTTGTGAAAGTTAGGCTTCAGGCCGAAGGAA 649
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 480 TGGGTATCATGGTAGCAAATCCCACTGATCTTGTGAAAGTTAGGCTTCAGGCGGAAGGAA 539
Query 650 AACTAGCTGCAGGTGCGCCAAGACGGTATTCTGGAGCGCTGAATGCTTATTCAACAATTG 709
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 AACTAGCTGCAGGTGCGCCAAGACGGTATTCTGGAGCGCTGAATGCGTATTCAACAATTG 599
Query 710 TGAGACAGGAAGGAGTCCGAGCTCTTTGGACTGGTCTTGGACCTAACGTAGCAAGAAACG 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGAGACAGGAAGGAGTCCGAGCTCTTTGGACTGGTCTTGGACCTAACGTAGCAAGAAACG 659
Query 770 CTATTATCAATGCTGCTGAATTAGCGAGTTACGATCAAGTGAAAGAGACGATCTTGAAGA 829
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 660 CTATTATCAATGCTGCTGAATTAGCGAGTTACGATCAAGTGAAAGAGACAATCTTGAAGA 719
Query 830 TTCCGGGTTTCACTGACAACGTTGTCACACATATTCTATCTGGACTGGGAGCAGGATTCT 889
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 720 TTCCGGGTTTCACTGACAACGTTGTTACACATATTCTATCTGGACTGGGGGCAGGGTTCT 779
Query 890 TTGCTGTCTGCATCGGCTCTCCTGTCGACGTGGTTAAGTCAAGAATGATGGGAGATTCTG 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTGCTGTCTGCATCGGCTCTCCTGTCGACGTGGTTAAGTCAAGAATGATGGGAGATTCTG 839
Query 950 GTGCTTACAAGGGCACCATTGACTGCTTCGTCAAAACTCTGAAGAGCGACGGTCCTATGG 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 840 GTGCTTACAAGGGCACCATTGACTGCTTCGTCAAAACTCTGAAGAGCGACGGTCCCATGG 899
Query 1010 CATTTTACAAGGGTTTCATCCCCAACTTTGGACGCCTTGGCTCATGGAACGTAATCATGT 1069
||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 900 CATTTTACAAGGGGTTCATCCCCAACTTTGGACGCCTTGGCTCATGGAACGTCATTATGT 959
Query 1070 TTTTGACCCTCGAACAGGCAAAGAAGTATGTCCGGGAACTCGATGCGTCCAAAAGAAACT 1129
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 960 TTTTGACCCTCGAACAGGCAAAGAAGTATGTCCGGGAACTCGATGCGTCTAAAAGAAACT 1019
Query 1130 GAGACACATAGTTTTAAGCAGAGGGAATAAGAGCAACATTGTTTTCTTCTTCA-TTTTCG 1188
|||||||| ||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 1020 GAGACACAGAGTTTTAAGCAGAGGGAATAAGAGCTACATTGTTTTCTTCA-CAATTTTCG 1078
Query 1189 GTGATTGAGAGAGGCCA-GAACTTGGTCGAATATTGTTTTCGGAATAGAGATTCAGTTTT 1247
||||||||||||||||| || |||||||||||||||||||| ||||||||| ||||||||
Sbjct 1079 GTGATTGAGAGAGGCCACGA-CTTGGTCGAATATTGTTTTCAGAATAGAGAGTCAGTTTT 1137
Query 1248 CGAGTAAAACTGTGAAATAAAATTTCTGTGGATTGCTCATATATTGGCTGTACCAT-CCA 1306
| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||
Sbjct 1138 CAAGTAAAACTGTGAAATAAAATTTCTGTGGATTTCTCATATTTTGGCTGTACCATTCCA 1197
Query 1307 ACATTTATCAAAAATCATACATTTTTCTCC-TTTCTTTCC 1345
||||||||||||||||||||||||| |||| |||||||||
Sbjct 1198 ACATTTATCAAAAATCATACATTTT-CTCCCTTTCTTTCC 1236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50322250440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5