BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54120.1
Length=962
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938328 jgi|Araly1|938328|scaffold_502519.1 966 0.0
Ahg485808 jgi|Araly1|485808|fgenesh2_kg.5__1800__AT3G54110.1 130 2e-29
> Ahg938328 jgi|Araly1|938328|scaffold_502519.1
Length=653
Score = 966 bits (523), Expect = 0.0
Identities = 609/651 (94%), Gaps = 4/651 (1%)
Strand=Plus/Plus
Query 191 CTGATCTTTCTTCTCAAAT-GAGTTCTTCTTCGGACAAGTTGTTCAACAGAGACAGGACA 249
||||||||||||||||||| || |||||| ||||||||||||||||||||||| || |||
Sbjct 5 CTGATCTTTCTTCTCAAATGGA-TTCTTCATCGGACAAGTTGTTCAACAGAGAGAGAACA 63
Query 250 ATACATGAGATTCTGGGAGGAGGCATTGTTGCAGATGTGATGCTGTGGAGGAAGAAGAAT 309
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 64 ATACATGAGATTCTGGGAGAAGGCATTGTTGCAGATGTGATGTTGTGGAGGAAGAAGAAT 123
Query 310 GTGAGTGTTGGTATAGTTACAGTGACAATAGCTTCATGGATGGTGTTTGAGGCATTTGCT 369
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 124 GAGAGTGTTGGTATAGTTACAGTGACTATAGCTTCATGGATGGTGTTTGAGGCATTTGCT 183
Query 370 TACACTATCTTTACTCTTATTTCAAGTGttcttcttctcttgctctctattctcttcctc 429
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 184 TACACTATCTTTACTCTTATTTCGAGTGTTCTTCTTCTCTTGCTTTCTATTCTCTTCCTC 243
Query 430 tGGTCCAAATCTGCTTCCATTCTCAACAGGCCATCACCGCCGTTACCGGAGTTTCAAATA 489
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 244 TGGTCCAAATCTGCTTCCATTCTCAACAGGCCATTACCGCCATTACCGGAGTTTCAAATA 303
Query 490 AGTGAAGCGATGGCGGAAGAAGCTTCGATATGGTTACGTATTCATGTGAACAAGCTACTC 549
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 304 AGTGAAGCGATGGCGGAAGAAGCTTCGATATGGTTACGCATCCATGTGAACAAACTACTC 363
Query 550 CAAGTTTCGCATGACATTGCAATGGCAAGAGACTCAGAGTTGTATACCAAAGTAGCAGTG 609
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 364 CAAGTTTCGCATGACATTGCAATGGGAAGAGACTCAGAGTTGTATACCAAAGTAGCAGTC 423
Query 610 TCACTGTTTCTTC-TCTCATTGATCGGAAGTCTCATGGATTTTCAGACACTTTGCCACAC 668
|| ||||||| || ||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 424 TCTCTGTTTC-TCATCTCATTAATAGGAAGCCTCATGGATTTTCAGACACTTTGCCACAC 482
Query 669 CAGCGTTTTGGTGGTTATGACGGTTCCAGCTTTCTATGAGAGATATGAGGATTACATTGT 728
||||||||||||||||||||||||||||||| ||||||||||||| || ||| ||||||
Sbjct 483 CAGCGTTTTGGTGGTTATGACGGTTCCAGCTGTCTATGAGAGATACGAAGATCACATTGA 542
Query 729 TGGCTCTATTGAGTTTATCTGCAACAAAACTAGAGAGCTTTACCTTAGACTCGAGATATG 788
||| ||||| |||||||| ||||||| ||| |||||||||||||||| |||||||||
Sbjct 543 TGGATCTATACTGTTTATCTACAACAAAGCTAAAGAGCTTTACCTTAGAGTCGAGATATT 602
Query 789 GGCTAATCCGGAAAATAAGAAACTGAGCTGAGATGCTGTCACCTCTTTCTT 839
|||| ||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 603 GGCTTTTCCAGAAAATAAGAAACTGAGCTGAGATGCTATCACCTCTTTCTT 653
> Ahg485808 jgi|Araly1|485808|fgenesh2_kg.5__1800__AT3G54110.1
Length=1236
Score = 130 bits (70), Expect = 2e-29
Identities = 82/87 (94%), Gaps = 3/87 (3%)
Strand=Plus/Minus
Query 878 GGAAAGAAA-GGAGAAAAATGTATGATTTTTGATAAATGTTGGA-TGGTACAGCCAATAT 935
||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1236 GGAAAGAAAGGGAG-AAAATGTATGATTTTTGATAAATGTTGGAATGGTACAGCCAAAAT 1178
Query 936 ATGAGCAATCCACAGAAATTTTATTTC 962
||||| |||||||||||||||||||||
Sbjct 1177 ATGAGAAATCCACAGAAATTTTATTTC 1151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35721173229
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5