BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54130.1
Length=1130
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485810 jgi|Araly1|485810|fgenesh2_kg.5__1802__AT3G54130.1 1530 0.0
> Ahg485810 jgi|Araly1|485810|fgenesh2_kg.5__1802__AT3G54130.1
Length=1118
Score = 1530 bits (828), Expect = 0.0
Identities = 1046/1144 (91%), Gaps = 43/1144 (4%)
Strand=Plus/Plus
Query 1 CTTCGCTTCACAATCTCTTTGAGACTTTTGCATCGGAGCAATAATAATATATTCA-TCGC 59
||||||||||||||||| |||||||||| |||||||||| ||| | | | ||| | |
Sbjct 1 CTTCGCTTCACAATCTC-TTGAGACTTTCGCATCGGAGC---AAT-A-A-A-TCAGT-G- 50
Query 60 AAAATCAGTGAATTTTGATATTCAAATCTTAATCGGCGATGGAACGAACAAGCAACGGAG 119
|| | || | ||||| || |||||||||||||||||||||||||||| ||||||||||
Sbjct 51 AATTTTAG-G-GTTTTGTTA-TCAAATCTTAATCGGCGATGGAACGAACGAGCAACGGAG 107
Query 120 GAATGTTGTATCACGAGGTTCAAGAGTCAAATCTGTGCGCCGTACACTGCGTCAACACGG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 GAATGTTGTATCACGAGGTTCAAGAGTCAAATCTGTGCGCCGTACACTGCGTCAACACGG 167
Query 180 TGTTGCAAGGGCCTTTCTTCTCTGAATTCGATTTGGCTGCCGTCGCCGCCGATCTAGACG 239
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 168 TGTTGCAAGGACCTTTCTTCTCCGAATTCGATTTAGCTGCCGTCGCCGCCGATCTCGACG 227
Query 240 GGAAGGAGCGTCAGGTTATGCTTGAAGGTGCTGCCGTTGGAGGTTTTGCTCCCGGCGATT 299
|||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||
Sbjct 228 GGAAGGAGCGTCAGGTTATGCTTGAAGGCGCTGCCGTCGGAGGGTTTGCGCCCGGCGATT 287
Query 300 TCTTAGCTGAAGAGTCGCACAATGTTTCCCTCGGCGGCGATTTTAGTATCCAGGTCTTGC 359
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 288 TCTTAGCTGAAGAGTCACACAATGTTTCCCTTGGCGGCGATTTTAGTATCCAGGTCTTGC 347
Query 360 AAAAAGCTTTGGAAGTGTGGGATCTACAAGTAATTCCACTCAATTGTCCAGATGCAGAGC 419
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 348 AAAAAGCTTTGGAAGTGTGGGATCTACAAGTGATTCCACTCAATTGTCCAGACGCAGAGC 407
Query 420 CTGCGCAGATAGACCCTGAGCTTGAAAGCGCCTTTATCTGCCACTTGCATGACCATTGGT 479
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 408 CTGCTCAGATAGACCCTGAGCTTGAAAGCGCCTTCATCTGCCACTTGCATGACCATTGGT 467
Query 480 TTTGTATAAGGAAAGTGAATGGCGAATGGTATAACTTTGATAGTCTCCTTGCTGCCCCGC 539
|||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 468 TTTGCATAAGGAAAGTGAATGGCGAATGGTATAACTTTGACAGCCTCCTCGCTGCCCCGC 527
Query 540 AACATTTATCGAAGTTCTACCTTTCTGCGTT-CTTAGACTCTCTCAAAGGCGCAGGATGG 598
||||||||||||||||||||||||| ||||| || ||||||||||||||| ||||||||
Sbjct 528 AACATTTATCGAAGTTCTACCTTTCCGCGTTTCTC-GACTCTCTCAAAGGCTCAGGATGG 586
Query 599 AGTATCTTCATAGTGAAAGGAAACTTCCCTCAGGAATGTCCCATGTCGTCTTCTTCTGAA 658
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 587 AGTATCTTCATAGTGAAAGGAAACTTCCCACAGGAGTGTCCCATGTCGTCTTCATCTGAA 646
Query 659 GCTTCCAATAGTTTCGGGCAGTGGCTTTCTCCTGAAGACGCAGAGAGAATAAGAAAGAAC 718
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
Sbjct 647 GCTTCCAATAGTTTCGGACAGTGGCTTTCTCCTGAAGACGCAGAGAGAATAATAAAGAGC 706
Query 719 ACGAGCTC---AG---G---TTCTTCTGCCAGAAACAAGAGAAGTAATGACAATGTTAAT 769
|||||||| || | ||||||||| |||||||| ||||||||||||||| || ||
Sbjct 707 ACGAGCTCCTCAGTACGAGGTTCTTCTGCTAGAAACAACAGAAGTAATGACAATATTGAT 766
Query 770 CAACAAAGACGGAATCAGGCATTGTCACGTGAGGAAGTGCAGGCTTTTTCAGAGATGGAA 829
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 CAACAAAGACCAAATCAGGCATTGTCACGTGAGGAAGTGCAGGCTTTTTCAGAGATGGAA 826
Query 830 GATGATGACTTGAAGGCAGCAATTGCAGCAAGTTTGCTTGATGCTTCTGCTGCTGAGGCC 889
|||||||||||||||||||||||||| || |||||||||||||||||||| |||| ||||
Sbjct 827 GATGATGACTTGAAGGCAGCAATTGCGGCGAGTTTGCTTGATGCTTCTGCGGCTGGGGCC 886
Query 890 AATCTCGGAGCTGTGGGCACTTCTGAAAAGGAAACTGAGAAACAAAAGTAGCAGAGAAAA 949
|||||||| | | |||| |||||| ||||||||||||||||| |||||||||||| ||||
Sbjct 887 AATCTCGGCGATATGGGGACTTCTCAAAAGGAAACTGAGAAAGAAAAGTAGCAGATAAAA 946
Query 950 TAGAGAACAAGTGTTATTGATGGAGGTGGTGGGATATTCACTTTTGTTTCTTTGTTTTGG 1009
|||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 947 TAGAGAACAAGTCTTATTGATGGAGGTGG-GAAATATTCACTTTTGTTTCTTTGTTTTGG 1005
Query 1010 TTTGTTATCAAGAGTTATCAACAATTTTACATACAGAACAGAGAAA-GAAA-AAA-G-CT 1065
||||||||||| ||| |||||||||||||||||||||| |||| ||| | ||
Sbjct 1006 TTTGTTATCAA-------CAA---TTTTACATACAGAACAGAGAAAAGAAAGAAAAGGCT 1055
Query 1066 TACATCGAAAGATAGA-AAA-CAGAGGATAATAAATGGTTTGTGGAATTGtttttgtttg 1123
|||||||||||||||| ||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 1056 TACATCGAAAGATAGAGAAAACAGAGAATAATAAATGGTTTGTG-AATTGTTTTTGTTTG 1114
Query 1124 attt 1127
||||
Sbjct 1115 ATTT 1118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42125823285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5