BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54140.1
Length=2064
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485811 jgi|Araly1|485811|fgenesh2_kg.5__1803__AT3G54140.1 2874 0.0
> Ahg485811 jgi|Araly1|485811|fgenesh2_kg.5__1803__AT3G54140.1
Length=1873
Score = 2874 bits (1556), Expect = 0.0
Identities = 1774/1878 (94%), Gaps = 20/1878 (1%)
Strand=Plus/Plus
Query 126 GAATATGGAAGAAAAAGATGTGTATACGCAAGATGGAACTGTTGATATTCACAAAAATCC 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAATATGGAAGAAAAAGATGTGTATACGCAAGATGGAACTGTTGATATTCACAAAAATCC 60
Query 186 TGCAAACAAGGAGAAAACCGGAAATTGGAAAGCTTGCCGCTTCATTCTCGGAAATGAGTG 245
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 TGCAAACAAGGAGAAAACTGGAAATTGGAAAGCTTGCCGCTTTATTCTCGGAAATGAGTG 120
Query 246 CTGTGAAAGATTGGCCTACTATGGCATGGGCACTAACCTTGTGAATTATCTTGAGAGCCG 305
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 CTGTGAAAGATTGGCTTACTATGGCATGGGCACTAACCTTGTGAATTATCTTGAGAGTCG 180
Query 306 TCTGAATCAAGGCAATGCTACGGCTGCAAATAACGTCACGAATTGGTCTGGAACATGTTA 365
| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 181 TTTGAATCAAGGCAATGCTACAGCTGCAAATAATGTCACGAATTGGTCTGGAACATGTTA 240
Query 366 TATAACTCCTTTGATTGGAGCCTTTATAGCTGATGCTTACCTTGGACGATATTGGACTAT 425
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TATTACTCCTTTGATTGGAGCCTTTATAGCTGATGCTTACCTTGGACGATATTGGACTAT 300
Query 426 TGCAACTTTTGTTTTCATCTATGTCTCCGGTATGACTCTTTTGACATTATCAGCTTCAGT 485
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGCAACCTTTGTTTTCATCTATGTCTCCGGTATGACTCTTTTGACATTATCAGCTTCAGT 360
Query 486 TCCTGGACTTAAACCAGGTAACTGCAATGCTGATACTTGTCATCCAAATTCTAGTCAGAC 545
|||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||||
Sbjct 361 TCCTGGACTTAAACCAGGTAACTGCAATGCGGATACTTGTCACCCGAATTCGGGTCAGAC 420
Query 546 TGCTGTTTTCTTTGTCGCGCTTTATATGATTGCTCTTGGAACTGGCGGTATAAAGCCGTG 605
|||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 421 GGCTGTTTTCTTTGTTGCGCTTTATATGATTGCGCTTGGTACTGGCGGTATAAAGCCGTG 480
Query 606 TGTTTCGTCCTTTGGAGCTGATCAGTTTGATGAGAATGATGAGAATGAGAAGATCAAGAA 665
|||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||
Sbjct 481 TGTTTCGTCCTTTGGAGCGGATCAGTTTGATGAGAATGATGAGGCTGAAAAGATCAAGAA 540
Query 666 AAGTTCTTTCTTCAACTGGTTTTACTTCTCCATTAATGTTGGAGCTCTCATTGCTGCAAC 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAGTTCTTTCTTCAACTGGTTTTACTTCTCCATTAATGTTGGAGCTCTCATTGCTGCAAC 600
Query 726 TGTTCTCGTCTGGATACAAATGAATGTTGGTTGGGGATGGGGTTTCGGTGTTCCAACAGT 785
|||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 601 TGTTCTTGTCTGGATACAAATGAACGTTGGTTGGGGGTGGGGTTTCGGTGTTCCGACAGT 660
Query 786 CGCGATGGTTATCGCGGTTTGCTTTTTCTTCTTCGGAAGCCGTTTTTACAGACTTCAGAG 845
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 661 CGCGATAGTTATCGCGGTTTGCTTTTTCTTCTTGGGAAGCCGTTTTTACAGACTTCAGAG 720
Query 846 ACCTGGAGGGAGTCCACTTACTA-GGATCTTTCAGGTTATAGTAGCGGCTTTTCGGAAGA 904
||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 721 ACCTGGAGGGAGTCCGCTTAC-ACGGATCTTTCAGGTTATAGTAGCGGCTTTTCGGAAGA 779
Query 905 TAAGTGTTAAGGTTCCAGAGGACAAGTCTCTGCTCTTTGAAACTGCAGATGATGAGAGTA 964
| ||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |
Sbjct 780 TGCGTGTTAAGGTTCCAGAGGATAAGTCTCTGCTCTTCGAAACCGCAGATGATGAGAGCA 839
Query 965 ACATCAAAGGTAGCCGGAAACTTGTGCACACAGATAACTTAAAGTTTTTTGACAAGGCAG 1024
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 840 ATATCAAAGGTAGCCGGAAACTTGTGCACACAGATAACTTAAAGTTTTTCGACAAGGCAG 899
Query 1025 CGGTTGAGAGTCAATCTGATAGCATCAAAGACGGGGAAGTCAATCCATGGAGACTATGTT 1084
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 900 CGGTTGAGAGTCAATCTGATAGCATCAAAGACGGGGAAGTGAATCCGTGGAGACTCTGTT 959
Query 1085 CTGTTACTCAAGTTGAAGAACTTAAGTCAATAATCACACTTCTTCCAGTTTGGGCCACAG 1144
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
Sbjct 960 CTGTTACTCAAGTTGAAGAACTTAAGTCCATAATCTCACTTCTTCCAGTTTGGGCCACGG 1019
Query 1145 GAATAGTCTTCGCCACAGTGTACAGCCAAATGAGCACAATGTTTGTGTTACAAGGAAACA 1204
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1020 GAATAGTCTTCGCCACAGTGTACAGCCAAATGAACACAATGTTTGTCTTACAAGGAAACA 1079
Query 1205 CAATGGACCAACACATGGGAAAAAACTTTGAAATCCCATCAGCTTCACTCTCACTTTTCG 1264
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1080 CAATGGACCAACACATGGGGAAAAACTTTGAAATCCCATCAGCTTCACTTTCACTTTTCG 1139
Query 1265 ACACTGTCAGTGTACTCTTCTGGACTCCTGTCTATGACCAGTTCATTATCCCGCTGGCAA 1324
|||| || || |||||||||||||||| |||||||| ||||||||||||||| ||||||
Sbjct 1140 ACACGGTAAGCATACTCTTCTGGACTCCCGTCTATGATCAGTTCATTATCCCGTTGGCAA 1199
Query 1325 GAAAGTTCACACGCAATGAACGAGGCTTCACTCAGCTTCAACGTATGGGTATAGGTCTTG 1384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GAAAGTTCACACGCAATGAACGAGGCTTCACTCAGCTTCAACGTATGGGTATAGGTCTTG 1259
Query 1385 TGGTCTCCATCTTTGCCATGATCACTGCAGGAGTCTTGGAGGTTGTCAGGCTTGATTATG 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TGGTCTCCATCTTTGCCATGATCACTGCAGGAGTCTTGGAGGTTGTCAGGCTTGATTATG 1319
Query 1445 TCAAAACTCACAATGCATATGACCAAAAACAGATCC-ATATGTCGATATTCTGGCAGATA 1503
|||||| |||||||||||||||||||||| |||||| | ||| | || || ||||| ||
Sbjct 1320 TCAAAAGTCACAATGCATATGACCAAAAAAAGATCCCA-ATGACCATTTTTTGGCAAATC 1378
Query 1504 CCGCAGTATTTACTTATCGGTTGTGCAGAAGTTTTCACCTTTATAGGTCAGCTTGAGTTT 1563
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CCGCAGTATTTACTTATTGGTTGTGCAGAAGTTTTCACCTTTATAGGTCAGCTTGAGTTT 1438
Query 1564 TTCTATGATCAGGCTCCTGATGCCATGAGAAGTCTCTGCTCTGCTTTGTCGTTGACCACG 1623
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1439 TTCTATGATCAGGCTCCTGATGCCATGAGAAGTCTTTGCTCTGCTTTGTCATTGACCACG 1498
Query 1624 GTTGCGTTGGGGAACTATTTGAGCACAGTTCTTGTGACGGTTGTGATGAAGAT-AACGAA 1682
||||||||||||||||| || ||||| || |||||||||||||||||||| || |||||
Sbjct 1499 GTTGCGTTGGGGAACTACTTAAGCACGGTCCTTGTGACGGTTGTGATGAA-ATTAACGAG 1557
Query 1683 GAAGAACGGTAAACCGGGTTGGATACCGGATAACTTGAACCGAGGCCATCTTGATTACTT 1742
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1558 GAAGAACGGTAAACCCGGTTGGATACCGGATAACTTGAACAGAGGCCATCTTGATTACTT 1617
Query 1743 TTTCTACTTGTTGGCAACTCTCAGTTTCCTCAACTTCTTAGTGTACCTCTGGATTTCAAA 1802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 TTTCTACTTGTTGGCAACTCTCAGTTTCCTCAACTTCTTAGTGTACCTCTGGATTTCAAA 1677
Query 1803 ACGCTACAAATACAAGAAAGCTGTTGGTCGAGCACATTGATCAAGAAACTGGTGTGGAAG 1862
|||||||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||
Sbjct 1678 ACGCTACAAATACAAGAAAGCTGTGGGTCGAGCACATTGATGAAGAATCTGGTGTCAAAG 1737
Query 1863 ATATTTGGAGTTAACA--G-T-----A--tttg-tttgaaaagtgttttgcttgtaaatg 1911
| |||||||||||| | | | | |||| |||| ||||||||||||||||||||
Sbjct 1738 AGATTTGGAGTTAAAAATGCTTGTTTAGCTTTGGTTTGGTAAGTGTTTTGCTTGTAAATG 1797
Query 1912 ttttttgtatgtggtctagttgttgttggtg-tgttaggtttgttttggttttgCTTATG 1970
||| | |||||||||||||||||||||||| | ||||||| ||||||||||||||||||
Sbjct 1798 TTTATA-TATGTGGTCTAGTTGTTGTTGGTGAT-TTAGGTTGGTTTTGGTTTTGCTTATG 1855
Query 1971 TATTTCTGAATACTTCCA 1988
||||||||||||||||||
Sbjct 1856 TATTTCTGAATACTTCCA 1873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77627919310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5