BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54150.1
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485812 jgi|Araly1|485812|fgenesh2_kg.5__1804__AT3G54150.1 1415 0.0
> Ahg485812 jgi|Araly1|485812|fgenesh2_kg.5__1804__AT3G54150.1
Length=1002
Score = 1415 bits (766), Expect = 0.0
Identities = 932/1010 (92%), Gaps = 20/1010 (2%)
Strand=Plus/Plus
Query 1 GAGTTTAAATAGAAAACGAATTAGTTGTGTATTCAAACCAAGGAAAGAA-AACGAGAGAG 59
||||||||||| |||||| | ||||| ||||||||||||||||||||| || ||||| |
Sbjct 1 GAGTTTAAATATAAAACG-A--AGTTGAGTATTCAAACCAAGGAAAGAAGAA-GAGAGCG 56
Query 60 GTACGTAGAAGAAAATGGCTGCCTTATCAGAGAAAGAGGCTGAAGCTTATCTCGACGCAA 119
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 G-A---AGAAGAAAATGGCTGCCTTATCAGAGAAAGAGGCTGAAGCTTATCTCGACGCAA 112
Query 120 GGCCTAGATATCCGATCGATTGGTTTAAGAAAATTGCCGCACGGACACAGGACCACAAAT 179
|||||||||||||||| ||||||| |||||| |||||||||||||||| ||||||||||
Sbjct 113 GGCCTAGATATCCGATTGATTGGTATAAGAAGATTGCCGCACGGACACTTGACCACAAAT 172
Query 180 TTGCTTGGGATGTTGGAACTGGTAATGGTCAGGCTGCTATTGGGCTTGTGGAGCATTACG 239
||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 173 TTGCTTGGGATGTTGGAACTGGTAACGGTCAGGCTGCTATTGGGCTTGTAGAACATTACG 232
Query 240 AGAATGTAGTGGCTACCGATATAAACGAAGCACAACTTCAACGAGCAATCAAACACTCAA 299
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 233 AGAATGTTGTGGCTACCGATATAAACGAAGCACAACTTAAACGAGCAATCAAACACTCAA 292
Query 300 GAATCAGTTACCATCACACTCCAACAACGATATCAGAAGATGAGATGGTGGATCTACTCG 359
|||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| |||
Sbjct 293 GAATCAATTACCATCACACTCCAATAACGATATCAGAAGATGAGATGGTGGCTCTAGTCG 352
Query 360 GGGGAGAAAACTCCGTGGATCTCATAGTTGCTGCTCAAGCTGTCCATTTCTTCGACCTCA 419
||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 353 GGGGAGAAAACTCTGTCGATCTCATAGTTGCTGCTCAAGCTGTCCATTTTTTCGACCTCA 412
Query 420 ACGTATTTTACAATGTTGCAAAACGTGTTCTTCGTAAAGAAGGAGGCCTAATCGCCGTTT 479
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 413 CCACATTTTACAATGTTGCGAAACGTGTTCTTCGTAAAGAAGGAGGCCTAATCGCCGTAT 472
Query 480 GGGTATACAACGATATCATTATCTCGCATGAGATCGATCCCATAATGAAGCGCCTTGTCG 539
|||||||||| || ||||||||||| | |||||||||||||||||||||||||||||| |
Sbjct 473 GGGTATACAATGACATCATTATCTCACCTGAGATCGATCCCATAATGAAGCGCCTTGTGG 532
Query 540 ACTCTACTCTACCTTTTAGAACTCCTATTATGAATTTAGCATTTGACGGTTACAAGACAT 599
||||||||||| |||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 533 ACTCTACTCTATCTTTTAGAACTCCTATTATGAATTTAGCATTTGACGGTTATAAAACGT 592
Query 600 TGACATTTCCTTTTGAGACCATAGGGATGGGTTCCGAAGGAAAGCCTATTACTCTAGACA 659
|| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 593 TGCCGTTTCCTTTTGAGACCATAGGGATGGGGTCCGAAGGAAAGCCTATTACTCTAGACA 652
Query 660 TTCCGCATAAACTTTCGCTTAAAGGGTTTATAGGGTTCTTGAGATCGTGGCAGCCCGCGA 719
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TTCCACATAAACTTTCTCTTAAAGGGTTTATAGGGTTCTTGAGATCGTGGCAGCCCGCGA 712
Query 720 TGAAGGCTAAGGAAAAAGGAGTAGAGCTTATAAATGAAGATCTAATAACCAAATTTGAGG 779
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 713 TGAAAGCCAAGGAAAAAGGAGTGGAGCTTATAAATGAAGATCTAATAACCAAATTTGAGG 772
Query 780 AGGCTTGGGGTGATGAAACCCAAGTGAAAGATGTTTTCTACAAGGCTCACATGATTGTTG 839
|||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 773 AGGCTTGGGGTGATAAAAACCAAGTTAAAGATGTTTTCTACAAGGCTCACATGATTGTTG 832
Query 840 GAAAAATTCCGGAAGAAAAATTCGAATCTGATCAAGTACTGTCT-AACAAAGGT--C--- 893
||||| ||||||||| |||| |||||||||||||||||||||| || | || | |
Sbjct 833 GAAAATTTCCGGAAGTAAAAGTCGAATCTGATCAAGTACTGTCCCAAGACAG-TAACAAA 891
Query 894 G-TCTCTTGCTTGAAACGGAGGTTGGGAGAAACCAGAAAAGACCACAACCATCCGATGAA 952
| ||||||||| |||||||||||||||||||| || |||||| ||||||||| ||||||
Sbjct 892 GGTCTCTTGCTAGAAACGGAGGTTGGGAGAAAACACAAAAGAAGACAACCATCAGATGAA 951
Query 953 GGAGACAG---ACAAAGTAAGAAACAAAATACAAGTGAAGATGACGCATG 999
|||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 952 GGAGACAGTGGACAAAGTAAGAAACAAAATACAAGTGAAGATGAGGCATG 1001
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44908796226
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5