BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54160.1
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323952 jgi|Araly1|323952|fgenesh1_pm.C_scaffold_5001496 1840 0.0
> Ahg323952 jgi|Araly1|323952|fgenesh1_pm.C_scaffold_5001496
Length=1293
Score = 1840 bits (996), Expect = 0.0
Identities = 1207/1308 (92%), Gaps = 18/1308 (1%)
Strand=Plus/Plus
Query 1 ATGAGTGAGATCGTGAGAGTTCAAGAGATCGTTTCTAAACTCTGGAACCTAAACATAGCC 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1 ATGAGTGAGATCGTGAGAGTTCAAGAGATCATTTCTAAACTCTGGAACCTAAAGATAGCC 60
Query 61 TCCAAAAAATCCCCGAATCTGGTTACGATCATATCGAATGTTGGTTATAATCCTTCGTTT 120
||||| || | || ||||||||||||||||||||||| ||||| |||| |||||||||||
Sbjct 61 TCCAAGAACTGCCTGAATCTGGTTACGATCATATCGACTGTTGCTTATGATCCTTCGTTT 120
Query 121 GAAACTAATGGAAGCTTCAAAGATTTCGTTTCTCGATTACTAGCTCGACGTGACAGTTAC 180
|||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct 121 GAAACTAATGGAAGCTTCAAAGATTTCGTTTCAAGATTATTGGCTCGACGTGACAGTTAC 180
Query 181 CGTATAAGGAGATTCTCTTTGAAACTACGTTCTTTGGAATTTGATTCAGCTAAGTACCAT 240
|||||||||||||||||||||||||| || ||| |||||||||| |||||||||||| ||
Sbjct 181 CGTATAAGGAGATTCTCTTTGAAACTGCGGTCTATGGAATTTGACTCAGCTAAGTACAAT 240
Query 241 CTTGTCAACGAATGTCTACGCAATGTGTTGAAT-CGAGGTGTTTTGGATCTTGAATTGGA 299
||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 241 CTTGTCAACGATTGTCTACGCAATGTGTTG-ATACGAGGTGTTTTGGATCTTGAATTGGA 299
Query 300 CATCAATGTCAATGAAGTTTACAAATTGCCATTTGAGGTCTTCACTTGCAAGAAAGTTGT 359
||| |||||| |||||| ||| | | |||||| |||||||||||||||||||||||||||
Sbjct 300 CATAAATGTCGATGAAGATTATACACTGCCATGTGAGGTCTTCACTTGCAAGAAAGTTGT 359
Query 360 GAAATTGAAACTAGGTTCTGATTTTGTTATTGACAATATCCCTAAGAACGCTTTGCTTCC 419
||||||||| ||||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 360 GAAATTGAAGCTAGGGTCTGCTTTTGTTATTGATAATATCCCTAAGAACGCTTTGCTTCC 419
Query 420 AGCTCTTAAGACTCTCTTTCTTGATAAAGTTCGGTTCATTGATAAAAGTGGTGGTTGTGC 479
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 420 AGCTCTTAAGACTCTCTTTCTTGATAAAGTCCGGTTCAATGATAAAAGTGGTGGTTGTGC 479
Query 480 GTTTACAAGGCTTGTTTCTGCTTGCCCTGTGCTAGAGGATTTAGTGATATATAGGAACAA 539
|||| |||||||||||||||||||||||||||| ||||| ||| | ||||||||||||||
Sbjct 480 GTTTGCAAGGCTTGTTTCTGCTTGCCCTGTGCTTGAGGAGTTATTCATATATAGGAACAA 539
Query 540 CCGTGAAGATTGGGAATGGTCTCGCATTGTGTCTAGTAAGATCCTTAAGAAACTTACTAT 599
||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 540 CCGTGAAGACTGGGAATGGTCTCGCATTGTGTCTAGTCAGATCCTTAAGAGACTTACTAT 599
Query 600 TCGGCGTGAAGACTGGGAAGATCTTGATGGCTCTAGTTATGAGTCAATTAGTTTTGATAC 659
||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 TCGGCGTCAAGACTGGGGAGATCTTGATGGCTCTAGTTATGAGTCTATTAGTTTTGATAC 659
Query 660 TCCGAGTCTTGAATACTTCGAATACTTTGATGTTCTCCGAGATGGGTATCCAGTTGTTGA 719
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
Sbjct 660 TCCGAGTCTTGAATACTTTGAATACTTTGATGTTCTCCGAGATGAGTATCCAGTTGTTAA 719
Query 720 TCTCAAGTCCCTTGTTGAAGCTAAGCTAGAACTTCCTCTTTTTATGGTTGGCGATACCTA 779
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 720 TCTCAAATCCCTTGTTGAAGCTAAGCTAGAACTTCCTCTTTTCATGGTTGGCGATACCTA 779
Query 780 CGATGTTAAGAATCTGATTAAGGGCTTAGAAAATGTTCAGATTCTGAGCTTAGGCGTTGT 839
|||||||| ||||||||||||||||||| |||||||||||||||||||||| || | | |
Sbjct 780 CGATGTTAGGAATCTGATTAAGGGCTTAAAAAATGTTCAGATTCTGAGCTTTGGTGCTCT 839
Query 840 TGACACGATGCAGGTGTTTTGTTTCTTC-GAAGAAGCAGTACCAGTGTTTGAAAACCTGT 898
|||||| |||||| |||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 840 TGACACCATGCAGCTGTTTTACATCTTCAGA-GAAGCAGTACCAGTGTTTGAAAACCTGT 898
Query 899 TTCATTTATCACTTAGCACTGAAGTAGATTTCTGTTGGAATGTTCTACCAATTCTGCTTG 958
||||||||||||||| |||||||| || |||||||||| |||||| |||||||||||||
Sbjct 899 TTCATTTATCACTTACCACTGAAGCAGCTTTCTGTTGGGCTGTTCTGCCAATTCTGCTTG 958
Query 959 AGAAATCTCCAAATCTAAAGACTCTCACCATTCAGGCTTTGCATTATACTACTAATCACT 1018
||||||||||||||||| |||||||||||||| ||||||||||||| ||||| ||
Sbjct 959 AGAAATCTCCAAATCTAGAGACTCTCACCATTGGGGCTTTGCATTATTCTACT---CA-- 1013
Query 1019 ATGGGGATGAGAACACTGTTTGCGATTGTTTGGAGGTGTATTCTTTCTTATCGTCCTGCC 1078
| | | ||| |||||||||||| || ||| ||| |||||||||| |||||||||| |
Sbjct 1014 A-G---A--AGA-CACTGTTTGCGAATGCTTGAAGGGGTATTCTTTCCTATCGTCCTGTC 1066
Query 1079 ATATTGAGGTTCTAAAGATAACCCAGTTCAAGGGAGATATCGGAGAGATGGTGCAAATAA 1138
||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1067 ATATTGAGGTTCTAAGGATAACCCAGTTCGAGGGAGATATTGGAGAGATGGTGCAAATAA 1126
Query 1139 AGCATATCTTGGAGAAATTGCCGAGTCTTGAGCTGTTGGAAATTCATGGTCAGGTAA-AA 1197
||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||
Sbjct 1127 AGCATATCTTGGAGAAATTGCCGAGTCTTGAGCTGTTGGAAATTCATTGTCAGGCAAGAA 1186
Query 1198 GGAGATGACAAAAAGCTGCAGATCATGTTGGATCTCCTAATGTTCGAAAGAGCTTCGTCT 1257
| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1187 G-AGATGACGAAAAGCTGCAGATCATGTTGGATCTCCTAATGCTCGAAAGAGCTTCGTCT 1245
Query 1258 GAATGCAAAGTCGAGGTCAAGTTTCCAGTTTGTTTTGCCTCAGCATGA 1305
|||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1246 GAATGCAAAGTCCAGGTCAAGTTTCCAGTTTGTTTTGCCTCAGCATGA 1293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48797333760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5