BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54170.1
Length=1262
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898355 jgi|Araly1|898355|Al_scaffold_0005_2321 1469 0.0
> Ahg898355 jgi|Araly1|898355|Al_scaffold_0005_2321
Length=1011
Score = 1469 bits (795), Expect = 0.0
Identities = 948/1017 (93%), Gaps = 30/1017 (3%)
Strand=Plus/Plus
Query 144 ATGGAGTTTTCATCACAAGACGACGATTTTGGAGGAGACGATTCCGCTGCTAATGCCACC 203
||||||||||| | |||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1 ATGGAGTTTTCCTTACAAGACGACGATTTTGGAGGAGATTATTCCGCTGCAAATGCCACC 60
Query 204 AGGGCTTCAGGTAATAGAAGAAGCTTCGGTGATCTTGAAGACGATGAAGATGATATTTTC 263
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGGGCTTCAGGTAATAAAAGAAGCTTCGGTGATCTTGAAGACGATGAAGATGATATTTTC 120
Query 264 GGATC----AA----C-AAC---------GGTAGC-G--CCTGGTGTTAG-AACTGGGAT 301
||||| || | ||| || ||| | ||||||||| | ||||| |||
Sbjct 121 GGATCAAAAAAGGGTCGAACTAAAGTGGAGGAAGCTGCACCTGGTGTT-GCAACTGCGAT 179
Query 302 GATTTTGTCTCTCCGAGGA-AGTCTTAAGAATTGTAAAGATGATCTTGCTTCATGTCAAA 360
||||||||| || ||| || |||||| |||||||||||||||||||| ||||||||||||
Sbjct 180 GATTTTGTCACTTCGA-GAGAGTCTTCAGAATTGTAAAGATGATCTTACTTCATGTCAAA 238
Query 361 ATGAGCTCGAGTCAGCAAAAACAGAGATTCAGAAGTGGAAGTCAGCGTTTCAGAATGAGT 420
||||||| || ||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 239 ATGAGCTTGAATCAGCGAAAACAGAGATTCAGAAGTGGAAATCAGCGTTTCAGAATGAGT 298
Query 421 CCTTTGTTCCCGCTGGAAAATCTCCTGAACCAAGATTTTTGATTGATTATATTCAAAACC 480
|||||||||||||||| |||||||||||||| |||||| ||||||| |||||||||||||
Sbjct 299 CCTTTGTTCCCGCTGGGAAATCTCCTGAACCTAGATTTCTGATTGACTATATTCAAAACC 358
Query 481 TAAAATCTTCTGAGAAATCTTTGAAAGAACAGTTAGAAATCGCAAAGAGAAAAGAAGCGT 540
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 359 TAAAATCTTCTGAGAGATCTTTGAAAGAACAGCTAGAAATCGCAAAGAGAAAAGAAGCGT 418
Query 541 CATGCATTGTACAATATGCGAAACGGGAACAAGAAATGGCAGAATTGAAGTCAGCTGTTC 600
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 419 CATGCATTGTACAATATGCAAAACGGGAACAGGAAATGGCAGAATTGAAGTCAGCTGTTC 478
Query 601 GCGATTTGAAATCTCAACTCAAGCCAGCGTCAATGCAGGCGAGGAGGTTGTTACTGGATC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GCGATTTGAAATCTCAACTCAAGCCAGCGTCAATGCAGGCGAGGAGGTTGTTACTGGATC 538
Query 661 CAGCAATTCATGAAGAATTTTCACGTCTGAAGAATCTAGTAGAGGAAAAAGACAAGAAGA 720
||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 539 CAGCAATTCATGAGGAATTTTCACGTCTGAAGAATCTAGTTGAGGAAAAAGATAAGAAGA 598
Query 721 TCAAGGAACTCCAGGACAACATTGCAGCAGTTACTTTTACTCCTCAAAGCAAGAATGGAA 780
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 599 TCAAGGAACTCCAGGACAACATTTCAGCCGTTACTTTTACTCCTCAAAGCAAGAATGGAA 658
Query 781 AGATGCTTATGGCAAAGTGCAGAACCCTGCAAGAGGAAAATGAGGAGATTGGGCACCAAG 840
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 659 AGATGCTTATGGCAAAGTGCAAAACCCTGCAAGAGGAAAATGAGGAGATTGGGCACCAGG 718
Query 841 CTGCCGAAGGAAAGATTCATGAACTAGCAATAAAGCTTGCAATGCAGAAGTCTCAAAACG 900
|||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 719 CTGCTGAAGGAAAGATTCATGAACTAGTAATAAAGCTTACAATGCAGAAGTCTCAAAACG 778
Query 901 CGGAACTTAGAAGTCAATTTGAAGGACTGTACAAACACATGGAGGAATTAACTAATGATG 960
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 779 CAGAACTTAGAAGTCAATTTGAAGGACTATACAAACACATGGAGGAATTAACTAATGATG 838
Query 961 TTGAGAGATCAAATGAAACGGTGATAATATTGCaagagaaactggaagagaaagagaagg 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTGAGAGATCAAATGAAACGGTGATAATATTGCAAGAGAAACTGGAAGAGAAAGAGAAGG 898
Query 1021 agatagagagagtaaagaaagGACTGGAAATTGTGTCTGA-GCTAGTAGGTGACAAGAAA 1079
||||||||||| ||||||||||| |||||||||||||||| | |||||||||||||||||
Sbjct 899 AGATAGAGAGAATAAAGAAAGGAATGGAAATTGTGTCTGATG-TAGTAGGTGACAAGAAA 957
Query 1080 GATGAAGTTGATGAAATTGATGAAGATGCAAAAGAAGAAATTGCTGGTGGAGAATAG 1136
||||||||||||||||| |||||||||||||||||| | |||||||||||||||||
Sbjct 958 GATGAAGTTGATGAAATCGATGAAGATGCAAAAGAA-A--TTGCTGGTGGAGAATAG 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47158048329
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5