BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54180.1
Length=1204
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485815 jgi|Araly1|485815|fgenesh2_kg.5__1807__AT3G54180.1 1688 0.0
Ahg934610 jgi|Araly1|934610|scaffold_402598.1 235 5e-61
> Ahg485815 jgi|Araly1|485815|fgenesh2_kg.5__1807__AT3G54180.1
Length=1020
Score = 1688 bits (914), Expect = 0.0
Identities = 985/1020 (97%), Gaps = 2/1020 (0%)
Strand=Plus/Plus
Query 1 CATCATCTTCATTAATCTGATCAAATAATAGGGTTAATCAAAAGTCCAGAAACCAACACA 60
|||||||| |||||||||||||||| ||||||||| ||||||| |||||||||| ||||
Sbjct 1 CATCATCTCCATTAATCTGATCAAAAAATAGGGTTCATCAAAAATCCAGAAACCGTCACA 60
Query 61 GTTCAA--TTTTACGAAACCTCTCAGAAATGGAGAAGTACGAGAAGCTAGAGAAGGTCGG 118
|||||| |||| | ||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 61 GTTCAATTTTTTTCAAAAAATCTCAGAAATGGAGAAATACGAGAAGCTAGAGAAGGTCGG 120
Query 119 AGAAGGAACATACGGGAAAGTCTACAAAGCGATGGAGAAAGGAACTGGTAAGCTTGTTGC 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 CGAAGGAACATACGGGAAAGTCTACAAAGCGATGGAGAAAGGAACTGGTAAGCTTGTAGC 180
Query 179 TCTGAAGAAAACTCGTCTCGAGATGGACGAAGAAGGTATTCCACCAACTGCTCTTCGTGA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTGAAGAAAACTCGTCTCGAGATGGACGAAGAAGGTATTCCACCAACTGCTCTTCGTGA 240
Query 239 GATCTCGCTTCTCCAGATGTTATCAACATCGATCTATGTTGTTCGATTACTCTGCGTCGA 298
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATCTCGCTTCTCCAAATGTTATCAACATCGATCTATGTTGTTCGATTACTCTGCGTCGA 300
Query 299 ACATGTTCATCAACCATCAACCAAATCTCAATCTACCAAATCCAATCTCTATCTCGTTTT 358
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 ACATGTTCATCAACCATCTACCAAATCTCAATCTACCAAATCGAATCTCTATCTCGTTTT 360
Query 359 CGAGTATCTCGATACTGATCTTAAGAAATTCATCGATTCGTATAGGAAAGGACCTAATCC 418
||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 361 CGAGTATCTTGATACTGATCTCAAGAAATTCATCGATTCGTATCGGAAAGGACCTAATCC 420
Query 419 TAAGCCTCTTGAGCCTTTTTTGATTCAGAAGTTGATGTTTCAGCTTTGTAAAGGTGTTGC 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 TAAGCCTCTTGAGCCTTTTTTGATTCAGAAGTTGATGTTTCAGCTTTGTAAAGGCGTTGC 480
Query 479 GCATTGTCATAGTCATGGTGTGCTTCACCGTGATCTTAAACCGCAGAATCTTCTTCTGGT 538
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 481 GCATTGTCATAGTCACGGTGTGCTTCACCGTGATCTTAAACCGCAGAATCTTCTTCTTGT 540
Query 539 GAAAGATAAAGAGCTTCTTAAGATTGCTGATTTGGGTCTTGGTCGTGCTTTTACTGTTCC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAAAGATAAAGAGCTTCTTAAGATTGCTGATTTGGGTCTTGGTCGTGCTTTTACTGTTCC 600
Query 599 TCTTAAGTCTTATACGCATGAGATTGTTACTCTTTGGTATAGAGCTCCTGAAGTTCTTCT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCTTAAGTCTTATACGCATGAGATTGTTACTCTTTGGTATAGAGCTCCTGAAGTTCTTCT 660
Query 659 TGGATCTACTCATTATTCAACTGGTGTTGACATGTGGTCTGTTGGTTGTATCTTTGCTGA 718
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 661 TGGATCTACTCATTATTCAACTGGTGTTGATATGTGGTCTGTTGGTTGCATCTTTGCTGA 720
Query 719 GATGGTTCGGAGGCAAGCTCTTTTCCCTGGTGATTCTGAGTTTCAGCAATTGCTTCATAT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GATGGTTCGGAGGCAAGCTCTTTTCCCTGGTGATTCTGAGTTTCAGCAATTGCTTCATAT 780
Query 779 CTTCAGGTTGCTAGGAACACCAACTGAGCAGCAATGGCCGGGTGTTTCCACACTGCGTGA 838
|||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 781 CTTCAGATTGCTAGGAACACCAACTGAGCAGCAATGGCCGGGTGTGTCCACTCTGCGTGA 840
Query 839 CTGGCATGTTTACCCTAAGTGGGAGCCGCAAGACTTAACTCTTGCTGTTCCTTCTCTTTC 898
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTGGCATGTTTACCCGAAGTGGGAGCCGCAAGACTTAACTCTTGCTGTTCCTTCTCTTTC 900
Query 899 ACCTCAAGGAGTTGATCTTCTCACGAAAATGCTCAAGTACAATCCAGCCGAAAGAATTTC 958
|||| |||||||||||||||||| |||| |||||||||||||||||||||| ||||||||
Sbjct 901 ACCTGAAGGAGTTGATCTTCTCATGAAACTGCTCAAGTACAATCCAGCCGAGAGAATTTC 960
Query 959 AGCAAAAACAGCACTTGATCACCCATATTTTGACAGCCTTGACAAGTCTCAGTTCTGAAG 1018
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 961 AGCAAAAACAGCACTTGATCACCCTTATTTTGACAGCCTTGACAAGTCTCAGTTCTGAAG 1020
> Ahg934610 jgi|Araly1|934610|scaffold_402598.1
Length=630
Score = 235 bits (127), Expect = 5e-61
Identities = 199/233 (85%), Gaps = 8/233 (3%)
Strand=Plus/Plus
Query 786 TTGCTAGGAACACCAACTGAGCAGCAATGGCCGGGTGTT-TCCACACTGCGTGACTGGCA 844
||| |||||||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct 41 TTGTTAGGAACACCAACTGAGCAGCAATGGCCGGGTGTAATGG-CATTGCGTGACTGGCA 99
Query 845 TGTTTACCCTAAGTGGGAGCCGCAAGACTTAACTCTTGCTGTTCCTTCTCTTTCACCTCA 904
||| || || |||||||||||||||||||| | | ||||||||| ||||| || ||| |
Sbjct 100 TGTCTATCCAAAGTGGGAGCCGCAAGACTTTTCACGTGCTGTTCCATCTCTATCTCCTGA 159
Query 905 AGGA-GTTGATCTTCTCACGAAAATGCTCAAG-TACAATCCAGCCGAAAGAATTTCAGCA 962
|||| | |||||||||||| ||||||| ||| ||||||||| | ||||||||||| |||
Sbjct 160 AGGAAGA-GATCTTCTCACGCAAATGCT-AAGGTACAATCCAACAGAAAGAATTTCGGCA 217
Query 963 AAAACAGCACTTGATCA-CCCATATTTTGACAGCCTTGACAAGTCTCAGTTCT 1014
||| |||| || ||||| ||| || ||||||||||||||||| ||||||||||
Sbjct 218 AAAGCAGCTCTCGATCATCCC-TACTTTGACAGCCTTGACAAATCTCAGTTCT 269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44946919143
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5