BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54190.1
Length=1909
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938338 jgi|Araly1|938338|scaffold_502529.1 2420 0.0
Ahg934611 jgi|Araly1|934611|scaffold_402599.1 1550 0.0
> Ahg938338 jgi|Araly1|938338|scaffold_502529.1
Length=1451
Score = 2420 bits (1310), Expect = 0.0
Identities = 1402/1447 (97%), Gaps = 3/1447 (0%)
Strand=Plus/Plus
Query 259 AAGAAGGAAGAATTAGATGGAAGGAAGAAGGATTACGGCAAGCCCTAGACCTTGTAGTGG 318
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 AAGAAGGAAGAAGTAGATGGAAGGAAGAAGGATTACGGCAAGCCCTAGACCTTGTAGTGG 65
Query 319 AAGAAGAATTGTGGCTAAGAAAAGGTCTCGACCCGATGGATTCGTCAACAGTGTTAAAAA 378
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 66 AAGAAGAGTTGTGGCTAAAAAAAGGTCTCGACCCGATGGATTCGTCAACAGTGTTAAAAA 125
Query 379 GCTTCAACGAAGAGAAATCTCTTCTCGTAAAGATCGAGCTTTCTCTATTAGCACCGCCCA 438
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 126 GCTTCAACGGAGAGAAATCTCATCTCGTAAAGATCGAGCTTTCTCTATTAGCACCGCCCA 185
Query 439 AGAGAGATTTCGTAACATGCGTCTCGTGGAGCAATATGATACTCACGATCCTAAA-GGGC 497
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 186 GGAGAGATTTCGTAACATGCGTCTCGTGGAGCAATATGATACTCACGATCC-AAAGGGGC 244
Query 498 ACTGTTTAGTTGCATTACCGTTTTTGATGAAGAGAACTAAAGTTATTGAGATTGTTGCTG 557
||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 245 ACTGTCTAGTTGCATTACCGTTTTTGATGAAAAGAACTAAAGTTATCGAGATTGTTGCCG 304
Query 558 CAAGGGACATTGTTTTTGCGCTTGCACATTCTGGTGTTTGCGCAGCTTTTAGTAGAGAGT 617
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 305 CCAGGGACATTGTTTTTGCGCTTGCTCATTCTGGTGTTTGCGCAGCTTTTAGTAGAGAGT 364
Query 618 CGAACAAAAGAATATGCTTTTTAAATGTTAGTCCAGATGAAGTCATCAGGAGCTTGTTCT 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 CGAACAAAAGAATATGCTTTTTAAATGTTAGTCCAGATGAAGTCATCAGGAGCTTGTTCT 424
Query 678 ACAACAAGAACAATGATTCTCTCATCACAGTTTCTGTTTATGCTTCAGACAATTTCAGCT 737
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 ACAACAAAAACAATGATTCTCTCATCACAGTTTCTGTTTATGCTTCAGACAATTTCAGCT 484
Query 738 CTTTGAAATGCAGATCCACTAGAATTGAGTATATTCTGAGAGGTCAGCCGGATGCAGGGT 797
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 485 CTTTGAAATGCAGATCCACTCGAATTGAGTATATTCTGAGAGGTCAGCCAGATGCAGGGT 544
Query 798 TTGCTCTTTTTGAGTCTGAATCATTAAAGTGGCCTGGTTTTGTTGAGTTTGATGATGTCA 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TTGCTCTTTTTGAGTCTGAATCATTAAAGTGGCCTGGTTTTGTTGAGTTTGATGATGTCA 604
Query 858 ATGGAAAGGTGCTGACTTATTCTGCGCAGGACAGTGTATACAAGGTGTTTGATCTGAAAA 917
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 605 ATGGAAAGGTGCTGACTTATTCTGCGCAGGACAGTGTGTACAAGGTTTTTGATCTGAAAA 664
Query 918 ACTACACCATGCTATATTCGATATCAGATAAAAATGTCCAGGAAATTAAAATCAGTCCAG 977
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 665 ACTACACAATGCTATATTCGATATCAGATAAAAATGTTCAGGAAATTAAAATCAGTCCAG 724
Query 978 GGATAATGTTATTGATCTTCAAGAGAGCTGCCAGTCATGTTCCTCTGAAGATTCTGTCGA 1037
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 725 GGATAATGTTACTGATCTTCAAGAGAGCTGCCAGTCACGTTCCTCTGAAGATTCTGTCGA 784
Query 1038 TAGAAGATGGCACTGTTCTCAAGTCCTTCAATCATTTGCTTCACCGAAACAAGAAAGTTG 1097
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 TAGAAGATGGCACAGTTCTCAAGTCCTTCAATCATTTGCTTCACCGAAACAAGAAAGTTG 844
Query 1098 ACTTCATTGAACAATTCAATGAGAAACTTCTTGTTAAGCAAGAGAATGAGAATCTTCAAA 1157
| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 845 ATTTCATTGAACAATTCAATGAGAAACTTCTTGTTAAGCAAGAGAATGAGAACCTCCAAA 904
Query 1158 TTCTTGACGTCAGAAATGCTGAGCTAATGGAAGTTAGTAGAGCTGAGTTCATGACACCGT 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 TTCTTGACGTCAGAAATGCTGAGCTAATGGAAGTTAGTAGAGCTGAGTTCATGACACCGT 964
Query 1218 CTGCATTCATATTTCTGTATGAGAACCAGTTGTTTCTGACATTCAGGAACCGGAACGTTT 1277
||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 965 CTGCATTCATATTTCTGTATGAGAACCAGTTGTTTCTGACATTCAGGAATCGAAATGTTT 1024
Query 1278 CTGTGTGGAACTTTCGCGGAGAGCTCGTTACTTCCTTTGAGGACCATCTTCTATGGCATC 1337
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1025 CTGTGTGGAATTTTCGCGGAGAGCTCGTGACTTCCTTTGAGGACCATCTTCTATGGCATC 1084
Query 1338 CAGACTGTAACACTAATAATATCTACATTACAAGTGATCAAGATCTGATCATCTCGTACT 1397
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1085 CAGACTGTAACACAAATAATATCTACATAACAAGTGATCAAGATCTGATCATCTCGTACT 1144
Query 1398 GCAAAGCAGATACCGAAGATCAGTGGATAGAAGGAAATGCGGGATCAATCAATATCAGCA 1457
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1145 GCAAAGCAGATACCGAAGATCAGTGGATAGAAGGAAATGCTGGATCGATCAATATCAGCA 1204
Query 1458 ATATATTGACTGGGAAATGCTTAGCTAAAATAACACCAAGCAGTGGGCCTCCAAAAGATG 1517
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 1205 ATATATTGACTGGGAAATGCTTAGCTAAAATTACACCAAGCAGTGGACCTCCAAAAGAAG 1264
Query 1518 ATGAGAGCAGCAGCAGTAATTGTATGGGAAAGAACTCAAAGCAAAGAAGAAACGCTGTAG 1577
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1265 ATGAGAGCAGCAGCAGTAGTTGTTTGGGAAAGAACTCAAAGCAAAGAAGAAACGCGGTAG 1324
Query 1578 CTGAAGCTTTGGAAGACATAACCGCTCTTTTCTACGACGAAGAACGCAATGAGATATACA 1637
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1325 CTGAAGCTTTGGAAGACATAACCGCTCTTTTCTATGACGAAGAACGCAATGAGATATACA 1384
Query 1638 CAGGAAACAGACACGGCCTTGTTCATGTGTGGTCCAATTGATTTCACAT-ACATCGTCAT 1696
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1385 CAGGAAACAGACACGGCCTTGTTCATGTGTGGTCCAATTGATTTCACATTACATCATCAT 1444
Query 1697 CGTTAGC 1703
|||||||
Sbjct 1445 CGTTAGC 1451
> Ahg934611 jgi|Araly1|934611|scaffold_402599.1
Length=1444
Score = 1550 bits (839), Expect = 0.0
Identities = 1230/1418 (87%), Gaps = 29/1418 (2%)
Strand=Plus/Plus
Query 274 GATGGAAGGAAGAAGGATTACGGCAAGCCCTAGACCTTGTAGTGG-A--AGAAGAATTGT 330
||||||||||||||| || | |||| ||||||||||||||| || | | |||| ||||
Sbjct 23 GATGGAAGGAAGAAGAATCATAGCAAACCCTAGACCTTGTAGCGGTAGTAAAAGAGTTGT 82
Query 331 GGCTAAGAAAAGGTCTCGACCCGATGGATTCGTCAACAGTGTTAAAAAGCTTCAACGAAG 390
|||||||| |||||||| ||||| ||||||||||| || ||||||||||||||||| |
Sbjct 83 TGCTAAGAAGAGGTCTCGTCCCGACGGATTCGTCAATAGCGTTAAAAAGCTTCAACGCCG 142
Query 391 AGAAATCTCTTCTCGTAAAGATCGAGCTTTCTCTATTAGCACCGCCCAAGAGAGATTTCG 450
||||||||||||||||| |||||||||||||| || |||||||| ||||||||||| ||
Sbjct 143 AGAAATCTCTTCTCGTATGGATCGAGCTTTCTCAATCAGCACCGCTCAAGAGAGATTCCG 202
Query 451 TAACATGCGTCTCGTGGAGCAATATGATACTCACGATCCTAAAGGGCACTGTTTAGT-TG 509
|| ||||||||||||||||||||||| || || ||||||||||| |||||||||| |
Sbjct 203 CAATATGCGTCTCGTGGAGCAATATGACACGCATGATCCTAAAGGATACTGTTTAGTAT- 261
Query 510 CATTACCGT-TTTTGATGAAGA-GAA-CTAAAGTTATTGAGATTGTTGCTGCAAGGGACA 566
||||||| | ||| |||| | ||| | ||||||||||||||||||||||| | ||||
Sbjct 262 CATTACC-TAACTTGTTGAA-ACGAAGC-AAAGTTATTGAGATTGTTGCTGCTCGAGACA 318
Query 567 TTGTTTTTGCGCTTGCACAT-TCTGGTGTTTGCGCAGCTTTTAGTAGAGAGTCGAACAAA 625
|||| ||||| ||| | | | ||||||||||| ||| ||||||| |||||| |||| |||
Sbjct 319 TTGTCTTTGCTCTTACTC-TATCTGGTGTTTGTGCATCTTTTAGCAGAGAGACGAATAAA 377
Query 626 AGAATATGCTTTTTAAATGTTAGTCCAGATGAAGTCA-TCAGGAGCTTGTTCTACAACAA 684
|| | |||||||||||||||||||| |||||||||| || |||| ||||||||||||||
Sbjct 378 AGGGTTTGCTTTTTAAATGTTAGTCCTGATGAAGTCATTC-GGAGTTTGTTCTACAACAA 436
Query 685 GAACAATGATTCTCTCATCACAGTTTCTGTTTATGCTTCAGACAATTTCAGCTCTTTGAA 744
|||||||||||||||||| || ||||||||||| || || ||||||| ||||||||||||
Sbjct 437 GAACAATGATTCTCTCATTACTGTTTCTGTTTACGCCTCTGACAATTACAGCTCTTTGAA 496
Query 745 ATGCAGATCCACTAGAATTGAGTATATTCTGAGAGGTC-AGCCGGATGCAGGGTTTGCTC 803
|||||||||||||||||| || ||||||||||| |||| || | || ||||| ||| |||
Sbjct 497 ATGCAGATCCACTAGAATCGAATATATTCTGAGGGGTCAAG-CAGACGCAGGATTTCCTC 555
Query 804 TTTTTGAGTCTGAATCATTAAAGTGGCCTGGTTTTGTTGAGTTTGATGATGTCAATGGAA 863
||||||||||||| ||| |||||||||| |||||||| |||||||||||||| ||||| |
Sbjct 556 TTTTTGAGTCTGAGTCACTAAAGTGGCCAGGTTTTGTAGAGTTTGATGATGTTAATGGGA 615
Query 864 AGGTGCTGACTTATTCTGCGCAGGACAGTGTATACAAGGTGTTTGATCTGAAAAACTACA 923
|||||||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||||
Sbjct 616 AGGTGCTGACATATTCTGCACAGGATAGTGTTTACAAGGTGTTTGATCTCAAAAACTATG 675
Query 924 CCATGCTATATTCGATATCAGATAAAAATGTCCAGGAAATTAAAATCAGTCCAGGGATAA 983
|| || |||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 676 CCTTGTTATACTCGATATCAGACAAAAATGTACAGGAAATTAAGATCAGTCCAGGGATAA 735
Query 984 TGTTATTGATCTTCAAGAGAGCTGCCAGTCATGTTCCTCTGAAGATTCTGTCGATAGAAG 1043
|||| ||||| |||||||||||||| |||||||||||| |||||||||| || || ||||
Sbjct 736 TGTTGTTGATTTTCAAGAGAGCTGCGAGTCATGTTCCTTTGAAGATTCTATCAATCGAAG 795
Query 1044 ATGGCACTGTTCTCAAGTCCTTCAATCATTTGCTTCACCGAAACAAGAAAGTTGACTTCA 1103
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 796 ATGGCACGGTTCTCAAGTCCTTCAATCATTTGCTTCACCGAAACAAGAAAGTTGATTTCA 855
Query 1104 TTGAACAATTCAATGAGAAA-CTTCTTGTTAAGCAAGAGAATGAGAATCTTCAAATTCTT 1162
|||||||||||||||| ||| ||||| |||||||||||||| |||||||| ||||| |||
Sbjct 856 TTGAACAATTCAATGA-AAAGCTTCTAGTTAAGCAAGAGAACGAGAATCTCCAAATACTT 914
Query 1163 GACGT-CAGAAATGCTGAGCTAATGGAAGTTAGTAGAGCTGAGTTCATGACACCGTCTGC 1221
||||| | ||||||||||||| || |||||||| ||| |||| ||||||||||| || ||
Sbjct 915 GACGTTC-GAAATGCTGAGCTGATAGAAGTTAGCAGAACTGAATTCATGACACCATCAGC 973
Query 1222 ATTCATATTTCTGTATGAGAACCAGTTGTTTCTGACATTCAGGAACCGGAACGTTTCTGT 1281
|||||||||| |||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 974 ATTCATATTTTTGTATGAGAACCAGTTGTTTCTAACATTCAGGAACCGAAATGTTTCTGT 1033
Query 1282 GTGGAACTTTC-GCGGAGAGCTCGTTACTTCCTTTGAGGACCATCTTCTATGGCATCCAG 1340
|||||| |||| |||||||||| || || || |||||||| |||||||| ||||||||||
Sbjct 1034 GTGGAA-TTTCCGCGGAGAGCTTGTGACCTCGTTTGAGGATCATCTTCTTTGGCATCCAG 1092
Query 1341 ACTGTAACACTAATAATATCTACATTACAAGTGATCAAGATCTGATCATCTCGTACTGCA 1400
|||||||||| || ||||||||||| ||||| ||||| |||||||||||||| || ||||
Sbjct 1093 ACTGTAACACAAACAATATCTACATAACAAGCGATCAGGATCTGATCATCTCATATTGCA 1152
Query 1401 AAGCAGATACCGAAGATCAGTGGATAGAAGGAAATGCGGGATCAATCAATATCAGCAATA 1460
| |||||||| ||||||||||||||||||||||||||||| || || || || |||||||
Sbjct 1153 AGGCAGATACTGAAGATCAGTGGATAGAAGGAAATGCGGGGTCGATTAACATAAGCAATA 1212
Query 1461 TATTGACTGGGAAATGCTTAGCTAAAATAACACCAAGCAGTGGGCCTCCAAAAGATGATG 1520
| |||||||| |||||||||||||| |||| | ||| | ||| ||||| || || || |
Sbjct 1213 TCTTGACTGGTAAATGCTTAGCTAAGATAAAAGCAAAAAATGGCCCTCCTAAGGAAGAAG 1272
Query 1521 AGAGCAGCAGCAGTAATTGTATGGGAAAGAACTCAAAGCAAAGAAGAAACGCTGTAGCTG 1580
| ||||||| ||| ||| | ||| |||||| || | ||| |||| || || ||||
Sbjct 1273 ACTGCAGCAGTAGTGATT-T--GGG---GAACTCCAATCGAAGGAGAAGTGCGGTTGCTG 1326
Query 1581 AAGCTTTGGAAGACATAACCGCTCTTTTCTACGACGAAGAACGCAATGAGATATACACAG 1640
| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 1327 AGGCTTTGGAAGACATAACCGCTCTCTTCTACGACGAAGAACGGAATGAAATATACACAG 1386
Query 1641 GAAACAGACACGGCCTTGTTCATGTGTGGTCCAATTGA 1678
|||||||||||||| || | ||||| ||||| ||||||
Sbjct 1387 GAAACAGACACGGCTTTCTCCATGTCTGGTCTAATTGA 1424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71723931335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5