BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54200.1
Length=896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485817 jgi|Araly1|485817|fgenesh2_kg.5__1809__AT3G54200.1 1099 0.0
> Ahg485817 jgi|Araly1|485817|fgenesh2_kg.5__1809__AT3G54200.1
Length=834
Score = 1099 bits (595), Expect = 0.0
Identities = 771/852 (90%), Gaps = 28/852 (3%)
Strand=Plus/Plus
Query 1 AAACCAAAACCCCTGAGAAACTCAACAGCGAGAGAACCACAAAGCGTAACAAAGAGAGTA 60
||| ||||||||| ||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1 AAAACAAAACCCCGGAGAAACTCAACAGCGAGAGAACCACAAAGCGTAAGAAAGTGAG-- 58
Query 61 ATAACTATGAGTGATTTTTCAATCAAACCCGATGATAAAAAGGAAGAGGAGAAGCCAGCA 120
|||||||| ||||||||||||| ||||||||||||||| | | ||||||||||||
Sbjct 59 -----TATGAGTGGTTTTTCAATCAAATCCGATGATAAAAAGG-A-A-GAGAAGCCAGCA 110
Query 121 ACAGCCATGTTA-C--CACCACCCAAACCAAACGCTTCTTCCATGGAAACGCAATCTGCT 177
| |||||||||| | || ||||||| |||||||||||||||||||||||||||||||||
Sbjct 111 AGAGCCATGTTAGCAGCAGCACCCAAGCCAAACGCTTCTTCCATGGAAACGCAATCTGCT 170
Query 178 AACACCGGAACCGCTAAAAAACTGCGGCGGAAACGCAACTGCAAAATCTGTATCTGTTTC 237
||| |||| || ||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 171 AACGGCGGAGGCGGTAAAAAAGTGCGACGGAAACGCAACTGCAAAATCTGTATCTGTTTC 230
Query 238 ACTATCCTTC-T-CATTCTCCTAATCGCCATAGTTATCGTCATCTTAGCTTTCACTCTCT 295
||||||| || | | ||||||| ||| ||| |||| |||||||| ||||||||||||
Sbjct 231 ACTATCC-TCTTGC-TTCTCCTCATCTTTGTAGCTATCCTCATCTTATCTTTCACTCTCT 288
Query 296 TCAAACCAAAACGCCCAACT-ACTACAATCGATTCCGTCACCGTTGATCGTCTCCAAGCT 354
|||||||||||||||||| | || || ||||||||||| |||||||||||||||| ||||
Sbjct 289 TCAAACCAAAACGCCCAA-TCACAACCATCGATTCCGTAACCGTTGATCGTCTCCGAGCT 347
Query 355 TCCGTCAATCCTCTCCTTCTCAAAGTCCTCCTAAACCTAACGCTCAACGTCGATCTCTCT 414
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 348 TCCGTCAATCCTCTCCTTCTCCAAGTCATCCTAAACCTAACGCTCAACGTCGATCTCTCT 407
Query 415 CTCAAAAACCCTAACCGCATCGGGTTTAGCTACGATTCGTCGTCGGCGTTGTTGAATTAC 474
|| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 408 CTGAAAAACCCTAACCGCGTCGGGTTTAGCTACGATTCTTCGTCGGCGTTGTTGAATTAC 467
Query 475 AGAGGCCAAGTGATCGGTGAAGCTCCTCTTCCGGCTAACCGAATCGCGGCGCGGAAAACG 534
||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 468 AGAGGCCAATTGATCGGTGAAGCTCCTCTTCCGGCGAACCGAATCGCGGCGCGGGAAACG 527
Query 535 GTGCCGTTGAATATAACGTTGACGCTAATGGCGGATCGGTTACTCTCTGAAACGCAGCTT 594
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 528 GTGCCGTTGAATTTAACGTTGACGCTAATGGCGGATCGGTTACTCTCTGAATCGCAGCTT 587
Query 595 TTATCTGACGTCATGGCTGGCGTCATTCCGCTTAATACTTTTGTTAAAGTCACTGGTAAA 654
|||||||||||||||||||||||||||||||| || ||||||||||| ||| ||||||||
Sbjct 588 TTATCTGACGTCATGGCTGGCGTCATTCCGCTCAACACTTTTGTTAAGGTCTCTGGTAAA 647
Query 655 GTAACCGTTCTTAAAATCTTTAAGATTAAAGTCCAATCGTCTTCTTCGTGTGATCTCAGT 714
||||| ||||||||| |||| ||||||||||||||| ||||||||||||||||||| |
Sbjct 648 GTAACTGTTCTTAAAGTCTTCAAGATTAAAGTCCAAGCGTCTTCTTCGTGTGATCTAACC 707
Query 715 ATCTCTGTTTCGGATCGTAATGTTACGAGTCAACACTGTAAGTATTCGACTAAGTTATAA 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 ATCTCTGTTTCGGATCGTAATGTTACGAGTCAACACTGTAAGTATTCGACTAAGTTATAA 767
Query 775 TCAGATC-TG-TAGATTCTACCACACtttgt-t-cttgttttgttttttggtatttgaat 830
|||||| | ||| | | | ||||||||| | |||||||||||||| ||||||| |||
Sbjct 768 ACAGATCATTCTAG-TAC-A--ACACTTTGTCTTCTTGTTTTGTTTTT-GGTATTTTAAT 822
Query 831 tggtttgtattt 842
||||||||||||
Sbjct 823 TGGTTTGTATTT 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33205060707
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5