BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54220.1
Length=2509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485819 jgi|Araly1|485819|fgenesh2_kg.5__1811__AT3G54220.1 3709 0.0
> Ahg485819 jgi|Araly1|485819|fgenesh2_kg.5__1811__AT3G54220.1
Length=2480
Score = 3709 bits (2008), Expect = 0.0
Identities = 2356/2517 (94%), Gaps = 52/2517 (2%)
Strand=Plus/Plus
Query 4 AGAAAGAGTTAAGATGAATAGAGATAGAAAGAGTCATTAAATGTACGAAGCGACATTCAC 63
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAAGAGTTAACATGAATAGAGATAGAAAGAGTCATTAAATGTACGAAGCGACATTCAC 60
Query 64 AATAATTCGAAAGGTGGAAGACGACTTAGATACGGCCAGGCTTCACTGTCCTCCTCGTCC 123
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 AATAATTCGAAAGGTGGAAGACGACTTAGATACGGCCAGGCTTCACTG---TCCTCGTCC 117
Query 124 TCCTCAATTACCCCTAACCCCTTTTT-CCGGGATTCATCTCCAACCCACATCCTTCCAAA 182
||||||| || ||| ||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 118 TCCTCAA-TA-CCCAAACCCCTTTTTCCCGGGATTCATCTCCAACCCACTTCCTTCCAAA 175
Query 183 TTCTCACCCCCTCACTGAGTTTTTGCTTTTTCTC-----CTCATCGGAGATCGTGAAGAC 237
||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 176 --ATCACCCCCTCACTGAGTTTTTGCTTTTTCTCATTTACTCATCGGAGATCGTGATGAA 233
Query 238 GATCAAGTAATTTAAGAATC-CCACCATTGATAAAAGAGTCTAGCTTTTC-TACTACCAA 295
||| |||||||||||||||| || |||||||| ||||||||||||||||| |||||||||
Sbjct 234 GATGAAGTAATTTAAGAATCTCCCCCATTGATTAAAGAGTCTAGCTTTTCTTACTACCAA 293
Query 296 ACCTTTTTCTGTTTGGAAATTTTCGATTTTGGATTTAACCCTTTTCTTAC-CTTATTTAT 354
||| |||||||||||||||||||||||||||||||| |||||||||| | | |||||||
Sbjct 294 ACCCTTTTCTGTTTGGAAATTTTCGATTTTGGATTTTGCCCTTTTCTT-CAC-TATTTAT 351
Query 355 AACCATGCAATCTCACGACCAACAACCCTTCAATCTCCATGGCGGAATCCGGCGATTTCA 414
|||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 352 AACCATGCAATCCCACGA-C--CAACCCTTCAATCTCCATGGCGGAATCCGGCGATTTCA 408
Query 415 ACGGTGGTCAACCTCCTCCTCATAGTCCTCTGAGAACAACTTCTTCCGGTAGTAGCAGCA 474
||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| ||||
Sbjct 409 ACGGTGGTCAACCTCCTCCTCATAGTCCTATAAGAACCACTTCTTCCGGTAGTAGTAGCA 468
Query 475 GCAACAACCGTGGtcctcctcctcctcctcctcctcctTTAGTGATGGTGAGAAAAAGAT 534
||||||||||| | | |||| |||||||||||||||||||||||||||||| |||
Sbjct 469 GCAACAACCGTAG------TGCTCCACCTCCTCCTCCTTTAGTGATGGTGAGAAAACGAT 522
Query 535 TAGCTTCCGAGATGTCTTCTAACCCTGACTACAACAACTCCTCTCGTCCTCCTCGCCGTG 594
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 523 TAGCTTCCGAGATGTCTTCTAACCCTGACTACAACAACCCCTCTCGCCCTCCTCGCCGTG 582
Query 595 TCTCTCACCTTCTTGACTCCAACTACAATACTGTCACACCACAACAACCACCGTCTCTTA 654
|||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 583 TCTCTCACCTCCTTGACTCCAACTACAATACTGTTTCACCACAACAACCA------C--- 633
Query 655 CGGCGGCGGCTACTGTATCTTCTCAACCAAACCCACCACTCTCTGTTTGTGGCTTCTCTG 714
||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 634 CGGCGACGG-T--TGTATCTTCTCAACCAAACCCACCACTCTCTGTCTGTGGCTTCTCCG 690
Query 715 GTCTTCCCGTTTTTCCTTCAGACCGTGGTGGTCGGAATGTTATGATGTCCGTACAACCAA 774
||||||| ||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 691 GTCTTCCGGTTTTTCCTTCAGACCGTGGTGGTCGGAATG-T-T-ATGTCCGTACAACCAA 747
Query 775 TGGATCAAGACTCTTCATCTTCTTCTGCTTCACCTACTGTATGGGTTGACGCCATTATCA 834
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 748 TGGATCAAGACTCTTCATCTTCTTCTGCTTCACCTACAATTTGGGTTGACGCCATTATCA 807
Query 835 GAGACCTTATCCATTCCTCAACTTCAGTCTCTATTCCTCAACTTATCCAAAACGTTAGAG 894
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 GAGACCTTATCCACTCCTCAACTTCAGTCTCTATTCCTCAACTTATCCAAAACGTTAGAG 867
Query 895 ACATTATCTTCCCTTGTAACCCAAATCTCGGTGCTCTTCTTGAATACAGGCTCCGATCTC 954
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 868 ACATTATCTTCCCTTGTAACCCAAATCTTGGTGCTCTTCTTGAATACAGACTCCGATCTC 927
Query 955 TCATGCTCCTTGATCCTTCCTCTTCCTCTGACCCTTCTCCTCAAACTTTCGAACCTCTCT 1014
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 928 TCATGCTTCTTGATCCTTCCTCATCCTCTGACCCTTCTCCTCAAACTTTCGAACCTCTCT 987
Query 1015 ATCAGATCTCCAACAATCCTTCTCCTCCacaacagcaacagcagcaccaacaacaacaac 1074
||||||||||||||||||||||||||| |||||| ||||| || || ||||| || ||||
Sbjct 988 ATCAGATCTCCAACAATCCTTCTCCTCAACAACAACAACAACAACAACAACACCAGCAAC 1047
Query 1075 aacagcaTAAGCCTCCTCCTCCTCCGATTCAGCAGCAAGAAAGAGAAAATTCTTCTACCG 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1048 AACAGCATAAGCCTCCTCCTCCTCCGATTCAGCAGCAAGAAAGAGAAAATTCTTCCACCG 1107
Query 1135 ATGCACCACCGCAACCAGAGACAGTGACGGCCACTGTTCCCGCCGTCCAAACAAATACGG 1194
|||||||||| | ||||||||| ||||||||||| || |||||||| ||||||||||| |
Sbjct 1108 ATGCACCACCACCACCAGAGACGGTGACGGCCACCGTCCCCGCCGTGCAAACAAATACAG 1167
Query 1195 CGGAGGCTTTaagagagaggaaggaagagattaagaggcagaagcaagacgaagaaggAT 1254
| ||||| ||||||||||| || ||||| |||||||| || ||||||||||||||||| |
Sbjct 1168 CAGAGGCGTTAAGAGAGAGAAAAGAAGAAATTAAGAGACAAAAGCAAGACGAAGAAGGTT 1227
Query 1255 TACACCTTCTCACATTGCTGCTACAGTGTGCTGAAGCTGTCTCTGCTGATAATCTCGAAG 1314
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1228 TACACCTCCTCACATTGCTGCTACAGTGCGCTGAAGCAGTCTCTGCTGATAATCTCGAAG 1287
Query 1315 AAGCAAACAAGCTTCTTCTTGAGATCTCTCAGTTATCAACTCCTTACGGGACCTCAGCGC 1374
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1288 AAGCAAACAAGCTTCTTCTCGAGATCTCTCAATTATCTACTCCTTACGGGACCTCAGCGC 1347
Query 1375 AGAGAGTAGCTGCTTACTTCTCGGAAGCTATGTCAGCGAGATTACTCAACTCGTGTCTCG 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1348 AGAGAGTAGCTGCTTACTTCTCGGAAGCTATGTCAGCGAGATTACTCAACTCGTGTCTCG 1407
Query 1435 GAATTTACGCGGCTTTGCCTTCACGGTGGATGCCTCAAACGCATAGCTTGAAAATGGTCT 1494
| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1408 GGATTTACGCGGCCTTGCCTTCACGGTGGATGCCTCAAACGCATAGCTTGAAGATGGTCT 1467
Query 1495 CTGCGTTTCAGGTCTTTAATGGGATAAGCCCTTTAGTGAAATTCTCACACTTTACAGCGA 1554
|||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1468 CTGCATTTCAAGTGTTTAATGGGATAAGCCCATTAGTGAAATTCTCACACTTTACAGCGA 1527
Query 1555 ATCAGGCGATTCAAGAAGCATTTGAGAAAGAAGACAGTGTACACATCATTGACTTGGACA 1614
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1528 ATCAGGCGATTCAAGAAGCGTTTGAGAAAGAAGACAGTGTACACATCATTGACTTGGACA 1587
Query 1615 TCATGCAGGGACTTCAATGGCCTGGTTTATTCCACATTCTTGCTTCTAGACCTGGAGGAC 1674
| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1588 TTATGCAAGGACTTCAATGGCCTGGTTTATTCCACATTCTCGCTTCTAGACCTGGAGGAC 1647
Query 1675 CTCCACACGTGCGACTCACGGGACTTGGTACTTCCATGGAAGCTCTTCAGGCTACAGGGA 1734
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1648 CTCCTCACGTGCGTCTCACGGGACTTGGTACTTCCATGGAAGCTCTTCAGGCTACAGGGA 1707
Query 1735 AACGTCTTTCGGATTTCGCAGATAAGCTTGGCCTGCCTTTTGAGTTCTGCCCTTTAGCTG 1794
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1708 AACGTCTTTCGGATTTCGCCGATAAGCTTGGCCTGCCTTTTGAATTCTGCCCTTTAGCTG 1767
Query 1795 AGAAAGTTGGAAACTTGGACACTGAGAGACTCAATGTGAGGAAAAGGGAAGCTGTGGCTG 1854
||||||||||||||||| |||||||||| |||||||| |||||||| |||||||||||||
Sbjct 1768 AGAAAGTTGGAAACTTGAACACTGAGAGGCTCAATGTAAGGAAAAGAGAAGCTGTGGCTG 1827
Query 1855 TTCACTGGCTTCAACATTCTCTTTATGATGTCACTGGCTCTGATGCACACACTCTCTGGT 1914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1828 TTCACTGGCTTCAACATTCTCTTTATGATGTCACTGGCTCTGATGCACACACTCTCTGGT 1887
Query 1915 TACTCCAAAGATTAGCTCCTAAAGTTGTGACAGTAGTGGAACAAGATTTGAGCCACGCTG 1974
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1888 TACTCCAAAGATTAGCTCCTAAAGTTGTGACAGTAGTGGAACAAGATCTGAGCCACGCTG 1947
Query 1975 GTTCTTTCTTAGGAAGATTTGTAGAAGCAATACATTACTACTCTGCACTCTTTGACTCAC 2034
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1948 GTTCTTTCTTAGGAAGATTTGTAGAAGCAATACATTACTACTCCGCACTGTTTGACTCGT 2007
Query 2035 TGGGAGCAAGCTACGGCGAAGAGAGTGAAGAGAGACATGTCGTGGAACAGCAGCTATTAT 2094
|||| |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 2008 TGGGGGCAAGCTACGGCGAAGAGAGCGAAGAGAGACATGTAGTGGAGCAGCAGCTATTAT 2067
Query 2095 CGAAAGAGATACGGAATGTATTAGCGGTTGGAGGACCATCGAGAAGCGGTGAAGTGAAGT 2154
|||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 2068 CGAAAGAGATACGGAATGTATTGGCGGTTGGAGGACCGTCGAGGAGCGGTGAAGTGAAGT 2127
Query 2155 TTGAGAGCTGGAGGGAGAAAATGCAACAATGTGGGTTTAAAGGTATATCTTTAGCTGGAA 2214
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 2128 TTGAGAGCTGGAGGGAGAAAATGCAACAATGTGGGTTTAAAGGTATATCATTAGCTGGCA 2187
Query 2215 ATGCAGCTACACAAGCGACTCTACTGTTGGGAATGTTTCCTTCGGATGGTTACACTTTGG 2274
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 2188 ATGCAGCTACACAAGCGACTCTACTCTTGGGAATGTTTCCTTCGGATGGATACACTTTGG 2247
Query 2275 TTGATGATAATGGTACACTTAAGCTTGGATGGAAAGATCTTTCGTTACTCACTGCTTCAG 2334
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2248 TTGATGATAATGGTACACTTAAGCTTGGGTGGAAAGATCTCTCGTTACTCACTGCTTCAG 2307
Query 2335 CTTGGACGCCTCGTTCTTAGTTTTCTTCTCCTTTTTCACAAACAATGTGCCCATAAATAG 2394
||||||| |||||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 2308 CTTGGACACCTCGTTCTTAGTTTTCT-CTCTTTTTTCAGAAACAATGTGCCCATAAATAG 2366
Query 2395 ATTTACCTG--tttt--ttttttGTT-ATGTATCAAAAAGAGAGGATTTTTTGAAGTCAA 2449
|| ||| || |||| ||||||||| |||||||||||||||||||||||| |||||||
Sbjct 2367 ATCTACTTGGGTTTTACTTTTTTGTTTATGTATCAAAAAGAGAGGATTTTT--AAGTCAA 2424
Query 2450 ATTGTTCTCACTCACACTCTGTATTGG-CTACCTGATTGGTGGAATACATAGAAGTT 2505
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 2425 ATTGTTCTCACTCACACTCTGTAT-GGACTACCTGATTGGTGGAATACATAGAAGTT 2480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94578078335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5