BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54240.1
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485821 jgi|Araly1|485821|fgenesh2_kg.5__1813__AT3G54240.1 1768 0.0
> Ahg485821 jgi|Araly1|485821|fgenesh2_kg.5__1813__AT3G54240.1
Length=1053
Score = 1768 bits (957), Expect = 0.0
Identities = 1021/1053 (97%), Gaps = 0/1053 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAAATGGTTAATAACAGGAGCAGTGGTAATAGTGTTGATTGGATTAGGGGCATGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGAAATGGTTAATAACAGGAGCAGTGGTAATAGTGTTGATTGGATTAGGGGCATGG 60
Query 61 GCTATTGTTTCCATTACACCTCCACCTCCTAAGAGATGCGGAACCCCAGGTGGACCGCCT 120
||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 GCTTTTGTTTCCATTAGACCTCCACCTCCTAAGAGATGCGGAACCCCCGGTGGACCGCCT 120
Query 121 ATTACCGCCCCTAGGATACGTCTCAGCGATGGCCGTTATTTAGCCTATGAAGAACATGGA 180
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 121 ATTACCGCCCCTAGGATCCGTCTCAGCGATGGCCGCTATTTGGCCTATGAAGAACATGGA 180
Query 181 GTTAGTAGACAAAATGCCACTTTCAAGATCGTCTTTATCCATGCATTCTCGACATTTAGG 240
|||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||
Sbjct 181 GTTAGTAGACAAAATGCCACTTTCAAGATCATCTTTATCCACGCATTCTCAACATTTAGG 240
Query 241 CGTGACGCTGTTATCGCCAACCGTGTTCGCCCTGGCTTTCTCGAGAAAAATGGCATCTAC 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGCGACGCTGTTATCGCCAACCGTGTTCGCCCTGGCTTTCTCGAGAAAAATGGCATCTAC 300
Query 301 GTGGTTTCATATGATCGACCTGGTTATGGAGAGAGCGATCCTCACTCGAGTCGCAATGAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 GTGGTTTCATATGATCGACCTGGTTATGGAGAGAGCGATCCTCACTCGAGTCGCAGTGAA 360
Query 361 AAGACTTTAGCTCATGACGTTGAACAACTTGCTGACCAACTACAACTTGGTTCCAAATTT 420
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGACTTTAGCGCATGATGTTGAACAACTTGCTGACCAACTACAACTTGGTTCCAAATTT 420
Query 421 TACGTGGTTGGATACTCAATGGGAGGTCAAGCCGTTTGGGGTGTTCTCAAATACATTCCT 480
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 TACGTGGTTGGGTACTCAATGGGAGGTCAAGCCGTTTGGGGTGTTCTCAAGTACATTCCT 480
Query 481 CACAGGCTCGCAGGAGCGACACTGCTTTGTCCTGTGACCAACTCATGGTGGCCGAGTTTC 540
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 481 CACAGGCTCGCAGGAGCGACATTGCTTTGTCCTGTAACCAACTCATGGTGGCCGAGTTTC 540
Query 541 CCAGATAGTTTGACATGGGAGCTATGGAACAAACAATCAAAATCCGAAAGGTTTTCGATG 600
|| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 541 CCGGATAGTTTGACATGGGAGCTGTGGAACAAACAATCAAAATCCGAAAGGTTTGCGATG 600
Query 601 CTCATTACTCATCACACTCCATGGCTACTCTACTGGTGGAACAATCAAAAGCTATTTTCA 660
||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 601 CTCGTTACTCATCATACTCCATGGCTACTCTATTGGTGGAACAATCAAAAGCTATTCGCA 660
Query 661 ACAACAGCTGTGATGCAATCAAGCCCCAATATGTTCTCTCCTCAAGATCTTGCACTACTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACAACAGCTGTGATGCAATCAAGCCCCAATATGTTCTCTCCTCAAGATCTTGCACTACTG 720
Query 721 CCCAAACTCGCCGCAAGGGTGTCTTACAAGAACCAAACAACACAACAAGGGACACACGAA 780
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 721 CCCAAACTCGCCGCAAGGGTGTCTTACAAGAACCAAACAACGCAACAAGGGACACACGAA 780
Query 781 TCACTTGACCGAGACCTGATTGTTGGATTTGGGAAATGGAGTTTTGACCCTATGAAGATC 840
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 781 TCACTAGACCGAGACCTGATTGTTGGATTTGGAAAATGGAGTTTTGACCCTATGAAGATC 840
Query 841 GAGAATCCGTTCCCTAAGGGTGAAGGTTCGGTACATATGTGGCAAGGGGATGATGATCGG 900
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GAGAATCCATTCCCTAAGGGTGAAGGTTCGGTACATATGTGGCAAGGGGATGATGATCGG 900
Query 901 CTCGTCCCGATACAACTACAAAGGATCATTGCTCAGAAACTAACTTGGATCAAGTATCAT 960
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 901 CTCGTCCCGATACAACTACAAAGAATCATTGCTCAGAAACTAAGTTGGATCAAGTATCAT 960
Query 961 GAGATTCCAGGTGCTGGTCATATTTTTCCGATGGCTGATGGGATGGCAGAAACTATCTTA 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 961 GAGATTCCAGGTGCTGGTCATATTTTTCCGATGGCTGATGGGATGGCAGAAACTGTCTTA 1020
Query 1021 AAAGAACTCTTGCCTATTCCTCAATCATCTTAA 1053
|||||||||||||||||||||||||||||||||
Sbjct 1021 AAAGAACTCTTGCCTATTCCTCAATCATCTTAA 1053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39190358676
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5