BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54250.1
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938344 jgi|Araly1|938344|scaffold_502535.1 2180 0.0
Ahg482881 jgi|Araly1|482881|fgenesh2_kg.4__1941__AT2G38700.1 1380 0.0
> Ahg938344 jgi|Araly1|938344|scaffold_502535.1
Length=1300
Score = 2180 bits (1180), Expect = 0.0
Identities = 1254/1291 (97%), Gaps = 0/1291 (0%)
Strand=Plus/Plus
Query 34 TGGAGATTCACATGGCGACGGAGAAATGGGTGTTCATGGTGACGGCGCAAACTCCGACGA 93
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 TGGAGCTTCACATGGCGACGGAGAAATGGGTGTTCATGGTGACGGCGCAAACTCCGACGA 69
Query 94 ACATTGCGGTGATTAAGTATTGGGGAAAGAGAGATGAGGTTCGGATTCTCCCCGTTAACG 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 ACATTGCGGTGATTAAGTATTGGGGAAAGAGAGATGAGGTTCGGATTCTCCCCGTTAACG 129
Query 154 ATAGCATTAGCGTAACTCTTGATCCTGATCATCTCTGCACAGTCACCACTGTTGCCGTTA 213
||||||||||||||||||||||||| ||||||||||| || || || ||||| |||||||
Sbjct 130 ATAGCATTAGCGTAACTCTTGATCCCGATCATCTCTGTACCGTTACTACTGTCGCCGTTA 189
Query 214 GTCCTGCTTTTGATCGGGATCGAATGTGGCTCAATGGCAAGGAAATATCTCTTTCTGGAA 273
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 190 GTCCTGCGTTTGATCGGGATCGAATGTGGCTCAATGGCAAGGAAATATCTCTATCTGGAA 249
Query 274 GTAGGTACCAAAATTGTTTGAGGGAAATACGAGGTCGTGCTGGTGATGTTGAAGACATGG 333
||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| ||
Sbjct 250 GTAGGTACCAAAATTGTTTGAGGGAGATTCGAAGTCGTGCTGGTGATGTTGAAGACAAGG 309
Query 334 AAAAGGGGATCAAGATAAGGAAGAAAGATTGGGAGAAATTGAATCTACATATTGCTTCTC 393
|||||||||||| |||| ||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 310 AAAAGGGGATCACGATAGGGAAGAAAGATTGGGAGAAATTGCATCTACACATTGCTTCTC 369
Query 394 ATAATAACTTCCCTACTGCTGCTGGCTTAGCATCTTCAGCTGCTGGATTTGCTTGTCTAG 453
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 ATAACAACTTCCCTACTGCTGCTGGCTTAGCATCTTCAGCTGCTGGATTTGCTTGTCTAG 429
Query 454 TTTTTTCTCTTGCAAAGTTGATGAATGTAGATGAAGATCCAAGCCATCTTTCTGCAATAG 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 TTTTTTCTCTTGCAAAGTTGATGAATGTAGATGAAGATCCAAGCCATCTTTCTGCAATAG 489
Query 514 CCAGGCAAGGTTCAGGAAGTGCTTGCCGGAGTTTATTTGGTGGATTTGTCAAGTGGACAA 573
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 490 CCAGGCAAGGTTCAGGAAGTGCTTGCCGTAGTTTATTTGGTGGATTTGTCAAGTGGACAA 549
Query 574 TGGGAAGCAAAGAAGATGGAAGTGACAGCGTTGCAGTTCAACTGGCAGATGAGAAGCATT 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 TGGGAAGCAAAGAAGATGGAAGTGACAGCGTTGCAGTTCAACTGGCAGATGAGAAGCATT 609
Query 634 GGGATGATCTTGTTATCATCATTGCTGTGGTGAGTTCACGGCAGAAGGAAACGAGCAGTA 693
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 610 GGGATGATCTTGTTATCATCATTGCTGTGGTGAGTTCACAGCAGAAGGAAACGAGCAGTA 669
Query 694 CCTCCGGAATGCGTGAAAGTGTTGAGACAAGTTTGCTTTTACAGCATAGAGCAAAAGAAG 753
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 670 CCTCCGGAATGCGTGAAAGTGTTGAGACGAGTTTGCTTTTACAGCATAGAGCAAAAGAAG 729
Query 754 TTGTGCCAAAACGGATTTTGCAAATGGAGGAAGCTATAAAAAATCGAGACTTTGCATCGT 813
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 730 TTGTGCCAAAACGGATTTTGCAAATGGAGGAAGCTATAAAAAATCGAGACTTTGCATCCT 789
Query 814 TTACACAATTGACATGTACAGATAGTAATCAGTTTCATGCTGTTTGTCTGGATACATCTC 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 TTACACAATTGACATGTACAGATAGTAATCAGTTTCATGCTGTTTGTCTGGATACATCTC 849
Query 874 CACCCATATTCTACATGAATGACACTTCACACAGAATAATTAGCTTAGTTGAAAAGTGGA 933
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 850 CACCCATATTCTACATGAATGACACTTCACACAGAATTATTAGCTTAGTTGAAAAGTGGA 909
Query 934 ACCGTTCTGAAGGGACACCACAGGTTGCTTACACATTTGATGCTGGTCCAAATGCTGTAC 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 ACCGTTCTGAAGGGACACCACAGGTTGCTTACACATTTGATGCTGGTCCAAATGCTGTAC 969
Query 994 TGATTGCACGCAACAGAAAGGTCGCAGTCCAATTGCTCCAGGGGCTTCTGTACTATTTTC 1053
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
Sbjct 970 TGATTGCACGCAACAGAAAGGTCGCAGTTCAATTGCTTCAGGGGCTTCTGTACTATTTCC 1029
Query 1054 CCCCTAAGTCAGACACTGATATGAAGAGTTACGTAGTGGGCGATAATTCAATTCTAAAAG 1113
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1030 CCCCTAAGTCAGACACTGATATGAAGAGTTACGTAGTGGGGGATAATTCGATTCTAAAAG 1089
Query 1114 AAGCAGGATTAGATGGAGCAAGTGGTGTAGAGAATCTGCAACCTCCACCTGAAATTAAAG 1173
|||||||| ||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 1090 AAGCAGGACTAGATGGAGCAAGTGGTGTCGAAAATCTGCAACCTCCGCCTGAAATTAAAG 1149
Query 1174 ACAACATTGGATCTCAGGATCAAAAAGGAGAAGTCAGTTATTTTATCTGCACTAGACCTG 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 ACAACATTGGATCTCAGGATCAAAAAGGAGAAGTCAGTTATTTTATCTGCACTAGACCTG 1209
Query 1234 GAAAAGGTCCCATCGTGCTTCACGACCAAACTCAAGCCCTTCTCGATCCTGAAACAGGCC 1293
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1210 GAAAAGGTCCCATCTTGCTTCAGGACCAAACTCAAGCCCTTCTCGATCCTGAAACTGGCC 1269
Query 1294 TTCCTAAGTGAGCATTCTCTCTGCTTCAAAC 1324
|||||||||||||||| |||||||| |||||
Sbjct 1270 TTCCTAAGTGAGCATTTTCTCTGCTGCAAAC 1300
> Ahg482881 jgi|Araly1|482881|fgenesh2_kg.4__1941__AT2G38700.1
Length=1587
Score = 1380 bits (747), Expect = 0.0
Identities = 1096/1260 (87%), Gaps = 41/1260 (3%)
Strand=Plus/Plus
Query 45 ATGGC-GACGGAGAAATGGGTGTTCATGGTGACGGCGCAAACTCCGACGAACATTGCGGT 103
||||| || ||||||||||||| | ||||||||||| || || |||||||| || || ||
Sbjct 130 ATGGCGGA-GGAGAAATGGGTGGTGATGGTGACGGCACAGACGCCGACGAATATCGCCGT 188
Query 104 GATTAAGTATTGGGGAAAGAGAGATGAGGTTCGGATTCTCCCCGTTAACGATAGCATTAG 163
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 189 GATTAAGTATTGGGGAAAGAGAGATGAGGTTCGGATTCTCCCCATTAACGATAGCATTAG 248
Query 164 CGTAACTCTTGATCCTGATCATCTCTGCACAGTCACCACTGT-TGCCGTTAGTCCTGCTT 222
||| || |||||||||||||| ||||| || ||||||| || | | ||||||||| | |
Sbjct 249 CGTCACGCTTGATCCTGATCACCTCTGTACTCTCACCACCGTCT-CTGTTAGTCCTTCCT 307
Query 223 TTGATCGGGATCGAATGTGGCTCAATGGCAAGGAAATATCTCTTTCTGGAAGTAGGTACC 282
||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 308 TTGATCGAGATCGAATGTGGCTCAATGGCAAGGAAATCTCGCTTTCTGGAAGTAGGTACC 367
Query 283 AAAATTGTTTGAGGGAAATACGAGGTCGTGCTGGTGATGTTGAAGACATGGAAAAGGGGA 342
| ||||| ||||||||||| ||| ||||||||| |||||||||||| | |||||||| |
Sbjct 368 AGAATTGCTTGAGGGAAATTCGAAGTCGTGCTGATGATGTTGAAGATAAAGAAAAGGGTA 427
Query 343 TCAAGATA-AGGAAGAAAGATTGGGAGAAATTGAATCTACATATTGCTTCTCATAATAAC 401
||||||| || ||||| ||||||||||||||| |||| || |||||||||||||||||
Sbjct 428 TCAAGATTGAG-AAGAAGGATTGGGAGAAATTGCATCTGCACATTGCTTCTCATAATAAT 486
Query 402 TTCCCTACTGCTGCTGGCTTAGCATCTTCAGCTGCTGGATTTGCTTGTCT-AGTTTTTTC 460
|||||||||||||||||||||||||||||||||||||| |||||||| || ||||||| |
Sbjct 487 TTCCCTACTGCTGCTGGCTTAGCATCTTCAGCTGCTGGTTTTGCTTG-CTTAGTTTTTGC 545
Query 461 TCTTGCAAAGTTGATGAATGTAGATGAAGATCCAAGCCATCTTTCTGCAATAGCCAGGCA 520
|||||| ||||||||||||||| |||||||||||||||| |||||||| ||||| |||||
Sbjct 546 TCTTGCCAAGTTGATGAATGTAAATGAAGATCCAAGCCAACTTTCTGCTATAGCAAGGCA 605
Query 521 AGGTTCAGGAAGTGCTTGCCGGAGTTTATTTGGTGGATTTGTCAAGTGGA-CAATGGGAA 579
||||||||||||||||||||| ||||||||||| |||||||||||||||| || ||||||
Sbjct 606 AGGTTCAGGAAGTGCTTGCCGTAGTTTATTTGGGGGATTTGTCAAGTGGAACA-TGGGAA 664
Query 580 GCAAAGAAGATGGAAGTGACAGCGTTGCAGTTCAACTGGCAGATGAGAAGCATTGGGATG 639
|||||||||||| |||||||| |||||||||||||||| |||||| |||||||||||||
Sbjct 665 ACAAAGAAGATGGGAGTGACAGTGTTGCAGTTCAACTGGTAGATGATAAGCATTGGGATG 724
Query 640 ATCTTGTTATCATCATTGCTGTGGTGAGTTCACG-GCAGAAGGAAACGAGCAGTACCTCC 698
||||||||||||| ||||||||||| |||||||| | |||||||||| ||||| |||||
Sbjct 725 ATCTTGTTATCATTATTGCTGTGGTTAGTTCACGAG-AGAAGGAAACAAGCAGCACCTCG 783
Query 699 GGAATGCGTGAAAGTGTTGAGACAAGTTTGCTTTTACAGCATAGAGCAAAAGAAGTTGTG 758
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 784 GGAATGCGTGAGAGTGTTGAGACAAGTTTGCTTTTACAGCATAGAGCAAAGGAAGTTGTC 843
Query 759 CCAAAACGGATTTTGCAAATGGAGGAAGCTATAAAAAATCGAGACTTTGCATCGTTTACA 818
||| |||||||||||||||||| ||||||||||| |||||||| ||| |||| ||||||
Sbjct 844 CCAGTACGGATTTTGCAAATGGAAGAAGCTATAAAGAATCGAGATTTTACATCTTTTACA 903
Query 819 CAATTGACATGTACAGATAGTAATCAGTTTCATGCTGTTTGTCTGGATACATCTCCACCC 878
||||||| ||| |||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 904 AAATTGACGTGTTCAGACAGTAATCAGTTTCATGCTGTTTGTATGGATACATCTCCACCC 963
Query 879 ATATTCTACATGAATGACACTTCACACAGAATAATTAGCTTAGTTGAAAAGTGGAACCGT 938
|||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||
Sbjct 964 ATATTCTACATGAATGACACCTCCCACAGGATAATCAGCTTAGTTGAAAAGTGGAACCGT 1023
Query 939 TCTGAAGGGACACCACAGGTTGCTTACACATTTGATGCTGGTCCAAATGCTGTACTGATT 998
|||| || |||||| || ||||||| |||||||||||||| |||||||| || ||||||
Sbjct 1024 TCTGCCGGTACACCAGAGATTGCTTATACATTTGATGCTGGCCCAAATGCAGTTCTGATT 1083
Query 999 GCACGCAACAG-AAAGGTCGCAGTCCAATTGCTCCAGGGGCTTCTGTACTATTTTCCC-C 1056
||| | ||||| |||| | ||||| ||||| | |||||||| || |||| || ||| |
Sbjct 1084 GCAAGAAACAGGAAAG-TAGCAGTTGAATTGATGCAGGGGCTGCTCTACTGCTT-CCCTC 1141
Query 1057 CTAAGTCAGACACTGATATGAAGAGTTACGTAGTGGGCGATA-ATTCAATTCTAAAAGAA 1115
||||| | ||||| || ||||||||||| ||| |||| |||| || | ||| |||||||
Sbjct 1142 CTAAGCCTGACACAGACATGAAGAGTTATGTACTGGGTGATACAT-CGATTGTAAAAGAG 1200
Query 1116 GCAGGATTAGATGGAGCAAGTGGTGTAGAGAATCTGCAACCTCCACCTGAAATTAAAGAC 1175
||||| || | | | | | | |||| || | || | | ||| ||||||||
Sbjct 1201 GCAGGCTT-G--G-A--A-G-G----AGAG---CT-C--CCACAAG--GAA-TTAAAGAC 1239
Query 1176 AACATTGGATCTCAGGATCAAAAAGGAGAAGTCAGTTATTTTATCTGCA-CTAGACCTGG 1234
|| |||||| ||||||||||||||| ||||| ||||||||||| |||| | ||||||||
Sbjct 1240 AAGATTGGAAATCAGGATCAAAAAGGTGAAGTGAGTTATTTTATATGCAGC-AGACCTGG 1298
Query 1235 AAAAGGTCCCATCGTGCTTCACGACCAAACTCAAGCCCTTCTCGATCCTGAAACAGGCCT 1294
|| |||||| | |||||||| ||||||||||||||||||||| ||||| |||| |||||
Sbjct 1299 AAGAGGTCCTGTGGTGCTTCAAGACCAAACTCAAGCCCTTCTCCATCCTCAAACTGGCCT 1358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55116584515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5