BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54260.1
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485823 jgi|Araly1|485823|fgenesh2_kg.5__1815__AT3G54260.1 1864 0.0
> Ahg485823 jgi|Araly1|485823|fgenesh2_kg.5__1815__AT3G54260.1
Length=1224
Score = 1864 bits (1009), Expect = 0.0
Identities = 1155/1227 (94%), Gaps = 4/1227 (0%)
Strand=Plus/Plus
Query 1 GCTCAGTTTCCTGGTCAAATGGCTACCTCAGAGACTCGAGTCTTGTTCTTATCTTTGTGT 60
||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1 GCTCAGTTTCCAAGTCAAATGGCTACCTCAAACACTCGAGTCTTGTTCTTATCTTTGTGT 60
Query 61 CTCATCCTTGGCAAAGTAGTTTTGTCTCAGTTTGATGAGTTATGGCTAGTAGGGGACGAT 120
|||||||| || ||| || |||||||||||||||||| ||||||||||||||||||||
Sbjct 61 CTCATCCTCAGCCAAGAAGCATTGTCTCAGTTTGATGAGCTATGGCTAGTAGGGGACGAT 120
Query 121 GATCCACTCAACGCCTTGCAGACGAGGCGTGAAAGAAGAGAGGAGAGGTGTGATTACTCG 180
||||| |||||||| |||||||| ||||| |||||||||| ||||||||| |||||||||
Sbjct 121 GATCCGCTCAACGCGTTGCAGACAAGGCGCGAAAGAAGAGTGGAGAGGTGCGATTACTCG 180
Query 181 GTGGGGAAATGGACGTTCGATGAAACGTATCCGCTCTATGATTCAAGCTGTCCATATCTG 240
||||||||||||| | ||||||| |||||||||| ||||| ||||||||||||||||||
Sbjct 181 GTGGGGAAATGGATATACGATGAATCGTATCCGCTTTATGACTCAAGCTGTCCATATCTG 240
Query 241 AGTTCTGCACTAAGTTGCCAAAGAAATGGAAGACCCGACTCTTATTACCAGAAATGGAGA 300
|| ||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 241 AGCTCTGCGCTAAGTTGCCAGAGAAATGGAAGGCCTGACTCTTATTACCAGAAATGGAGA 300
Query 301 TGGATCCCTAAGGCTTGTTCACTACCAAGGTTTGACGCATTGAAATTTCTTGGGAAAATG 360
|||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 TGGATCCCCAAGGGTTGTTCACTACCAAGGTTTGACGCATTGAAATTTCTGGGGAAAATG 360
Query 361 AGAGGAAAAAGAATAATGCTGGTTGGAGATTCAATGATGAGAAACCAGTGGGAATCTCTT 420
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 AGAGGAAGAAGAATAATGCTGGTTGGAGATTCAATAATGAGAAACCAGTGGGAATCTCTT 420
Query 421 GTCTGCTTAGTACAGTCTGTTCTTCCCACTCATCGTAAGAAGCTCACTTACAATGGTCCT 480
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTCTGCTTAGTACAGTCTGTGATTCCCACTCATCGTAAGAAGCTCACTTACAATGGTCCT 480
Query 481 ACGATGTCTTTCCATTCTCTGGATTTTGAGACATCAATTGAGTTTTGTTGGGCTCCTCTG 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACAATGTCTTTCCATTCTCTGGATTTTGAGACATCAATTGAGTTTTGTTGGGCTCCTCTG 540
Query 541 CTTGTGGAACTCAAGAGAGGAGTTGACCGTAAAAGGGTGTTACATTTGGACTCAATCGAA 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 CTTGTGGAACTCAAGAGAGGAGTTGATCGTAAAAGGGTGTTACATTTGGACTCAATCGAA 600
Query 601 GACAATGCTAGATATTGGCGTGGTGTAGATGTTCTTGTATTCGATTCCGCTCACTGGTGG 660
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 601 GACAATGCTAGATATTGGCGTGGTGTTGATGTTCTTGTATTCGATTCCGCTCACTGGTGG 660
Query 661 ACTCACTCTCAGAGATGGAGTTCGTGGGATTATTACATGGATGGGAATAAGATCTTCAAA 720
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 661 ACTCACTCTCAGAAATGGAGTTCGTGGGATTATTACATGGATGGGAATAAGGTCTTCAAA 720
Query 721 GCTATGGACCCAATGGTTGCTTATGAGAGAGGACTAACCACATGGGCTAAATGGGTTGAG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCTATGGACCCAATGGTTGCTTATGAGAGAGGACTAACCACATGGGCTAAATGGGTTGAG 780
Query 781 ATAAATCTTGATCCATCCAAAACAAAAGTCATTTTCCGCACTGTCTCACCGAGAGAGAGT 840
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 781 ATAAATCTTGATCCATCCAAAACCAAAGTCATTTTCCGCACTGTCTCACCGAGAGAAAGT 840
Query 841 GGTCAGATGTGCTACAACCAGAAACATCCCTTGCCTTCTTTATCTTCTTCCACCAAACCC 900
||||| |||||||||||||||||||||||||||||||||||||| ||||| | ||||||
Sbjct 841 GGTCAAATGTGCTACAACCAGAAACATCCCTTGCCTTCTTTATCCTCTTCTAGCAAACCA 900
Query 901 CACGTGCCTCAACAGTCAAGAGTGTTGAACAAAGTGCTAAGGACAATGAAATACCGAGTG 960
||||||||||| |||||||||||||||||||||||||| || | ||||||||| ||||||
Sbjct 901 CACGTGCCTCAGCAGTCAAGAGTGTTGAACAAAGTGCTTAGCAAAATGAAATATCGAGTG 960
Query 961 TATTTATACGATATCACAACAATGTCTGCGTATAGAAGAGACGGTCATCCTTCGGTGTTC 1020
||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 961 TATTTGCACGATATCACAACGATGTCGGCGTATAGGAGAGACGGTCATCCTTCGGTGTTC 1020
Query 1021 AAGAGAGCAATGCACGAGGAAGAGAAGCACCATCGTA-TCGCTGGACCTTCATCAGATTG 1079
|||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||
Sbjct 1021 AAGAGAGCAATGCACGAGGAAGTGAAGCACCATCGTCCTA-CTGGACCTTCATCAGATTG 1079
Query 1080 CAGTCATTGGTGCTTGCCCGGTGTCCCGGATATTTGGAATGAGATGCTTTCTTCAATTAT 1139
|||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1080 CAGTCACTGGTGCTTGCCTGGTGTACCGGATATTTGGAATGAGATGCTTTCTTCAATTAT 1139
Query 1140 CTTAACCAATGCTGTATGAGCTATAATAAGAGTCTGTTTTTACTCATGAACAATGGTGTT 1199
||||||||||| ||||||||||| | ||||| ||||||||||||||||||| ||||||||
Sbjct 1140 CTTAACCAATGTTGTATGAGCTA-A-TAAGAATCTGTTTTTACTCATGAACCATGGTGTT 1197
Query 1200 ACTTATATGAATCAGTGGTTTATATAT 1226
|||| |||||||||||||||| |||||
Sbjct 1198 ACTTTTATGAATCAGTGGTTTTTATAT 1224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46509958740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5