BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54270.1
Length=1726
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938346 jgi|Araly1|938346|scaffold_502537.1 2043 0.0
> Ahg938346 jgi|Araly1|938346|scaffold_502537.1
Length=1316
Score = 2043 bits (1106), Expect = 0.0
Identities = 1243/1309 (95%), Gaps = 9/1309 (1%)
Strand=Plus/Plus
Query 105 GAAATCGATGGATAGGCTTGAAGGACCACCACGTCTCATACTAGTTGCTGATCTCGATTG 164
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 14 GAAATCGATGGATAGGCTTGAAGGACCACCACGTCTCATACTTGTTGCCGATCTTGATTG 73
Query 165 CACATTGGTGGATCACGATGATCCTGAAAACAATGACCTTCTTAGATTCAATGCGCTTTG 224
|||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 74 CACATTGGTGGATCACGATGATCCTGAAAACACCGATCTTCTCAGATTCAATGCGCTTTG 133
Query 225 GGAAGCTCACTATCGCCATGATTCATTGCTTGTTTATTGCACCGGGAGGTCTTTCAGTTC 284
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 134 GGAAGCTCACTATCGCCATGATTCATTGCTTATTTACTGCACCGGGAGGTCTTTCAGTTC 193
Query 285 TTAC-TCGAGTCTGAGGAAGAAGAGACCGTTGTTGACTCCTGACATCGCCGTAACTTCTG 343
|||| | |||||| || |||||||||||||||||||| || |||||||||||||||||||
Sbjct 194 TTACAT-GAGTCTAAGAAAGAAGAGACCGTTGTTGACGCCGGACATCGCCGTAACTTCTG 252
Query 344 TGGGTTCTGAGATTGTATACGGCGGCGGTGAATCAACGGTGTCTGATGTTGTTTGGACTG 403
| |||||||||||||| || | ||||||||||||| ||||| ||||||||||||||||
Sbjct 253 TAGGTTCTGAGATTGTGTA---CAGCGGTGAATCAACAGTGTCGGATGTTGTTTGGACTG 309
Query 404 CTCGTTTGGATTATAAGTGGAATAGAGACATTGTTGTTGAGGAAACTCTTAAATTCCCTA 463
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 310 CTCGTTTGGATTATAAGTGGAATAGAGAAATTGTTGTTGAGGAAACTCTTAAATTCCCTA 369
Query 464 AACTTGAGCCTCAGCCAGACAAGAGCCAAGAAGAGCACAAAGTGAGTTTTTTCGTGGGAA 523
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 370 AACTTGAGCCTCAGCCAGACAAGAGCCAAGAAGAGCACAAAGTGAGTTTTTTTGTGGAAA 429
Query 524 GAGAAGACGCTGTTGAAATAATGAAGGTTCTTCCAGGGATATTAGAGGAGCGTGGGGTGG 583
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 430 GAGAAGACGCTGTTGAAATAATGAAGGAACTTCCAGGGATATTAGAGGAGCGTGGGGTGG 489
Query 584 ATGTGAAGCTGGTTTATAGTAATGGATATGCTTTTGATGTATTACCAAGAGGAGCTGGCA 643
||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 490 ATGTGAAGCTGGTTTATAGCAATGGCTATGCTTTCGATGTATTACCAAGAGGAGCTGGCA 549
Query 644 AACAAGGTGCTTTGACATATCTACTTGACAAGTTGGATATTGAAGGCAAGCAGCCTTCTA 703
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 550 AACAAGGTGCTTTGACATATCTACTTGACAAGTTGGATATTGAAGGCAATCAGCCTTCTA 609
Query 704 ACACACTTGTTTGTGGTGACTCTGGAAATGATGCTGAGCTTTTCAACATTTCTGACGTAT 763
| ||||||||||| |||||||||||||| ||||||||||| |||||||||||| | ||||
Sbjct 610 ATACACTTGTTTGCGGTGACTCTGGAAACGATGCTGAGCTCTTCAACATTTCTCAAGTAT 669
Query 764 ATGGCGTAATGGTTAGCAATTCGCATGAAGAATTATTGCAATGGTATGAAGAAAATGCAA 823
|||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 670 ATGGTGTAATGGTTAGCAATTCGCATGAAGAATTATTACAATGGCATGAAGAAAATGCAA 729
Query 824 AGGACAACCCAAAAATATTTCATGCGTCTGAGAGGTGTGGAGCTGGTATGATAGAAGCTA 883
||||||| |||||||||||||||||||| ||||| ||||| |||||||| |||||||| |
Sbjct 730 AGGACAATCCAAAAATATTTCATGCGTCCGAGAGATGTGGGGCTGGTATCATAGAAGCCA 789
Query 884 TTCAGAGGTTTAATTTGGGACCAAATGTCTCTCCTAGAGATGTTATGGACACTGAAAATT 943
|||||||||||||||||||||||| ||||||||| ||||||||| ||||| |||||| ||
Sbjct 790 TTCAGAGGTTTAATTTGGGACCAAGTGTCTCTCCAAGAGATGTTTTGGACTCTGAAATTT 849
Query 944 TCCATGG-GGAAAGTTTGAATCCTGCTCATGAGGTTGTTCAGTTTTATTTGTTTTATGAG 1002
|||| || |||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 850 TCCA-GGCGGAAAGTTTGAATCTTGCTCATGAGGTTGTTCAGTTTTATTTGTTGTATGAG 908
Query 1003 AGATGGCGTTGTGGAGAGGTGGAAAAGTCTGACAAGTACTTGCAGAATTTGAAATCGCTC 1062
|||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 909 AGATGGTGTTGTGGAGAGGTGGAGAAGTCTGACAAGTATTTGCAGAATTTGAAATCGCTC 968
Query 1063 TCTAGTCCACTTGGTATTTTTGTTCATCCGTCTGGAGTGGAGAAACCGATACATGAATGG 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 TCTAGTCCACTTGGTATTTTTGTTCATCCGTCTGGAGTGGAGAAACCGATACATGAATGG 1028
Query 1123 ATAGATGAGATGGAAAATTTATACGGTGATGGGAAGGAAAAGAAGTTTCGCATTTGGTTG 1182
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1029 ATAGATGAGATGGAAAATTTATATGGTGATGGGAAGGAAAAGAAGTTTCGCATTTGGTTG 1088
Query 1183 GATAATGTTACGTCTTCTCATATCAGTTCAGATACATGGCTTGCAAAATTTGTA-AAGCA 1241
||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1089 GATAATGTTTCGTCTTCTCATATCAGTTCAGATACATGGCTTGCAAAATTTG-ACAAGCA 1147
Query 1242 TGAGTTATCTGAGGGAAAAGTACGGTCTTGTTCAACAAAAGTCTTACTGAGTTATAAGGA 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 TGAGTTATCTGAGGGAAAAGTACGGTCTTGTTCAACAAAAGTCTTACTGAGTTATAAGGA 1207
Query 1302 GGAAAAGCAAAGGCTGACGTGGATGCACATCCACCAATCATGGTTAGATGAATCTTCTTC 1361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1208 GGAAAAGCAAAGGCTGACGTGGATGCACATCCACCAATCATGGTTAGATGAATCTTTTTC 1267
Query 1362 AGATGATCAAGAAAAATGGATTTTCTAAAGGATTATCTTAATCTCGACT 1410
||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1268 AGATGATCAAGAAAAATGGGTTTTCTAAAGCATTATCTTAATCTCGACT 1316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64753416500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5