BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54290.1
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485826 jgi|Araly1|485826|fgenesh2_kg.5__1818__AT3G54290.1 2019 0.0
> Ahg485826 jgi|Araly1|485826|fgenesh2_kg.5__1818__AT3G54290.1
Length=1419
Score = 2019 bits (1093), Expect = 0.0
Identities = 1283/1369 (94%), Gaps = 35/1369 (3%)
Strand=Plus/Plus
Query 10 AGTTCCTAAAGCTTTTGGCAATATGATAATGGCGTGATACCTTTTTCTC-TCCTCTCAAC 68
|||||||||||||||||||||| ||||||||||||||||||||||| || | ||||||||
Sbjct 1 AGTTCCTAAAGCTTTTGGCAATTTGATAATGGCGTGATACCTTTTT-TCATTCTCTCAAC 59
Query 69 AAACGCGCCTCT-AA--tctctc-aatcttctccaactccaatttcttgcaattcactcc 124
|||||||||||| || |||||| ||||||||| |||||||||||||||||||||||||
Sbjct 60 AAACGCGCCTCTAAATCTCTCTCTCATCTTCTCCGACTCCAATTTCTTGCAATTCACTCC 119
Query 125 aacttcttcttcatcttcttcttctctctctctctGAGATTCTAGATTTCGTTTCTCACG 184
|||||||||||| || || || |||||||||||| ||||||||||||||||||||
Sbjct 120 AACTTCTTCTTC-TC-TC-TC-TCTCTCTCTCTC------TCTAGATTTCGTTTCTCACG 169
Query 185 TTTTCTTCACCAAATATGGGAACCTGCTTCTCCAGCTCAACTAAATCCACGGCTGAGATC 244
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 170 TTTTCTTCACCAAATATGGGAACCTGCTTCTCCAGCTCCACTAAATCCACGGCTGAGATC 229
Query 245 TCTCCCTTTGACCTCGTCGTCAAACCTCCTCCTCCTT---CCGCCGCCGCCACCGCACCA 301
||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||
Sbjct 230 TCTCCCTTTGACCTCGTCGTCAAACCTCCTCCTTCTTCCGCCGCCGCCGCCACTGCACCA 289
Query 302 CCAACCCAACGAATCCCCACCG---CGAAAACAGAAACATCGACGGTGAGCTTCACCGCA 358
|||||||||||||||||||||| || ||| ||||| ||||||||||||| |||||
Sbjct 290 CCAACCCAACGAATCCCCACCGCCACGGCCACAAAAACAGAGACGGTGAGCTTCGCCGCA 349
Query 359 ACAGTGAGATTATACGGACCACCTAACAGTCTAGTGACGTCGTATCTCCGTTTCGCTCTT 418
|||||||| || |||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 350 ACAGTGAGGTTGTACGGACCACCTAACAGTCTGGTTACTTCGTATCTCCGTTTCGCTCTT 409
Query 419 CTCCACAAGAAAGTTCCGCTCCGTTTCGTTCCATCGGAAGACCAAAAACCGACGATTCAA 478
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 410 CTTCACAAGAAAGTTCCTCTCCGTTTCGTTCCATCGGAAGACCAAAAGCCGACGATTCAA 469
Query 479 GTCGGATCGGAGACTGTATC---AGGTTCTCGAGAGGTTCTTCTCCGTTACATCGAGGAT 535
||||||| ||||||||||| ||| |||| ||||||||||||||||||||||||||||
Sbjct 470 ATCGGATCCGAGACTGTATCAGGAGGATCTCTAGAGGTTCTTCTCCGTTACATCGAGGAT 529
Query 536 AAGTTCCCAGAGCCGCGTTTGATGATTTGGAAGTTTAATCTGGAAGGCTTCGACGAAGCG 595
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 530 AAGTTCCCGGAGCCGCGTTTGATGATTTGGAAGTTTAATCTAGAAGGTTTCGACGAAGCG 589
Query 596 ACTCCATTGATAGTGAAGA-TGATTTGGCTTCAGCATAGGAGTATGTTGTGGCATATGGA 654
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 590 ACTCCATTGATAGTG-AGAGCGATTTGGCTTCAGCATAGGAGTATGTTGTGGCATATGGA 648
Query 655 GAGGATGTTGAGATGGTCGGAGGATCTGGCGGCGCGTGGAGGTAAAAAAGCGGTGGATCC 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 GAGGATGTTGAGATGGTCGGAGGATCTGGCGGCGCGTGGAGGTAAAAAAGCGGTGGATCC 708
Query 715 GTCTGTGGGAACACCGAAGATGGAGATTAGGAAATTTGCAAAGAGTTATACTCATTTACA 774
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 709 GTCGGTGGGAACACCGAAGATGGAGATTAGGAAATTTGCAAAGAGTTATACACATTTACA 768
Query 775 GGAGCTTATGCTCGAACATGCTCAAATGGAAGAGAGAATCTTGTTCCCTGTTCTTGAATC 834
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 AGAGCTTATGCTTGAACATGCTCAAATGGAAGAGAGAATCTTGTTCCCTGTTCTTGAATC 828
Query 835 TGTTGATCGAGGGATGTGTAAAAGTGCAAATGAAGAACATGGGAGAGAATTACCAATGAT 894
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 829 TGTTGATCGAGGGATGTGTAAAAGTGCAAATGAGGAACATGGAAGAGAATTACCAATGAT 888
Query 895 GAATGGTATCAAAGAAGATATCAAATCTATTGGAGTTTTGGATTCTGGGATTTGTTCAGA 954
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GAATGGAATCAAAGAAGATATCAAATCTATTGGAGTTTTGGATTCTGGGATTTGTTCAGA 948
Query 955 AGCTCTCTTTAGTCTTGCTTCTCGTTTCAAATCATTGCAGATGATGTGTAAAACACATTT 1014
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 949 AGCTCTCTTTAGTCTTGCTTCACGTTTCAAATCATTGCAGATGATGTGTAAAACACATTT 1008
Query 1015 TGAAGAGGAAGAGAAAGATTTATTGCCAATGGTGGAAGCTGCAGAAATGGGGAAAGAGAA 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 TGAAGAGGAAGAGAAAGATTTATTGCCAATGGTGGAAGCTGCAGAAATGGGGAAAGAGAA 1068
Query 1075 GCAGAAGAAATTGATGAATCAAAGCTTAGAAGTTATGAGTGGGACTCATTCTAACTCGTT 1134
||||||||||||| |||||||| |||| |||||||||||||||||||||||||| |||||
Sbjct 1069 GCAGAAGAAATTGTTGAATCAAGGCTTGGAAGTTATGAGTGGGACTCATTCTAATTCGTT 1128
Query 1135 TGATTTCCTACTAGAAGGTCTCACTCCACAAGAAGCTATGCAGTATATTGACTTGCTCAT 1194
||||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||
Sbjct 1129 TGATTTCCTACTAGAGGGTCTTACTCCTCAAGAAGCTATGCAGTATCTTGACTTGCTCAT 1188
Query 1195 GACATTTGGTGATCCAAATCTTATCTCATCTTTTCTCTGCTCTGATGTTGTTGACTGATT 1254
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1189 GAAATTTGGTGATCCAAATCTTATTTCATCTTTTCTCTGCTCTGATGTTGTTGACTGAAT 1248
Query 1255 TTATCCTTTT-TAGGCTCACTTTGTGAAAAACT---GTTGTTGTGTGTGGGGTTGTGAAT 1310
| ||| |||| |||| | ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1249 T-ATC-TTTTATAGGTTTACTTTGTGAAAAACTACTGTTGTTGTGTGTGGGGTTGTGAAT 1306
Query 1311 TTTGTGTATATAGAGTCAGATTTGTCGATT-CAGGTGTTGCTATGTTTT 1358
|||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1307 TTTGTGTATATAGAGTCAGATT-GTCGATTTCAGGTGTTGCTATGTTTT 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55230855250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5