BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54300.1
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938351 jgi|Araly1|938351|scaffold_502542.1 1303 0.0
> Ahg938351 jgi|Araly1|938351|scaffold_502542.1
Length=767
Score = 1303 bits (705), Expect = 0.0
Identities = 745/765 (97%), Gaps = 0/765 (0%)
Strand=Plus/Plus
Query 153 AGGTTTCACGAGTACAATAATGAGTCAAAAGGGTTTGATATATAGCTTTGTTGCTAAAGG 212
||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3 AGGCTTCACGAGTTCAATAATGAGTCAGAAGGGTTTGATATATAGCTTTGTTGCTAAAGG 62
Query 213 AACAGTTGTTCTAGCAGAGCATACTCCTTATTCAGGAAACTTTAGCACCATTGCTGTTCA 272
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 AACAGTTGTTCTTGCGGAGCATACTCCTTATTCAGGAAACTTTAGCACCATTGCTGTTCA 122
Query 273 ATGTCTGCAGAAGCTACCCACAAATAGCAGCAAGTATACTTACTCTTGCGATGGTCATAC 332
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 123 ATGTCTGCAGAAGCTACCCACTATTAGCAGCAAGTATACTTACTCTTGCGATGGTCATAC 182
Query 333 TTTCAATTTCCTTGTTGACAATGGCTTTGTGTTTCTAGTGGTTGCTGATGAGTCCACCGG 392
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 183 TTTCAATTTCCTTGTTGACAATGGTTTTGTGTTTCTTGTGGTTGCTGATGAGTCCACTGG 242
Query 393 AAGAAGTGTTCCTTTCGTGTTTCTCGAACGGGTCAAGGAAGACTTTAAGAAGCGGTATGA 452
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 243 AAGAAGTGTTCCTTTCGTGTTTCTTGAACGGGTCAAGGAAGACTTTAAGAAGCGGTATGA 302
Query 453 AGCGAGTATAAAGAATGATGAGCGACATCCTCTTGCGGATGAGGACGAAGATGATGATTT 512
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 303 AGCGAGTATAAAGAATGATGAGCGACACCCTCTTGCAGATGAGGACGAAGATGATGATTT 362
Query 513 GTTTGGAGATCGGTTTAGCGTTGCATACAATCTTGACAGGGAGTTCGGGCCCATACTAAA 572
||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||| ||
Sbjct 363 GTTTGGAGATCAGTTTAGCATTGCATACAATCTTGACAGGGAGTTTGGGCCCATACTTAA 422
Query 573 GGAGCATATGCAGTATTGTATGAGCCATCCAGAAGAGATGAGCAAACTTTCTAAGTTGAA 632
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 423 GGAGCATATGCAGTATTGTATGAGCCATCCAGAAGAGATGAGCAAACTTTCAAAGTTGAA 482
Query 633 GGCCCAAATAACTGAGGTCAAGGGGATCATGATGGACAACATTGAGAAGGTTCTGGACAG 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GGCCCAAATAACTGAGGTCAAGGGGATCATGATGGACAACATTGAGAAGGTTCTGGACAG 542
Query 693 AGGAGAGAAGATCGAACTTCTGGTTGACAAAACCGAGAACCTACAGTTCCAGGCAGATAG 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 AGGAGAGAAGATCGAACTTCTGGTTGACAAAACCGAGAACCTACAGTTCCAGGCAGATAG 602
Query 753 CTTCCAGAGACAAGGAAGGCAGTTAAGAAGGAAGATGTGGCTACAGAGTCTGCAGATGAA 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 CTTCCAGAGACAAGGAAGGCAGTTAAGAAGGAAGATGTGGCTACAGAGTCTGCAGATGAA 662
Query 813 GCTGATGGTGGCTGGTGCTGTTTTCTCTTTTATTCTCATCGTTTGGGTTGTTGCTTGTGG 872
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 663 GCTGATGGTGGCTGGTGCTGTTCTCTCCTTTATTCTCATCGTTTGGGTTGTTGCTTGTGG 722
Query 873 AGGTTTCAAATGCTCATCATGATGTTTCGCTTCGTTTGTATCTGT 917
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 AGGTTTCAAATGCTCATCATGATGTTTCGCTTCGTTTGTATCTGT 767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38732883672
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5