BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54320.1
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485830 jgi|Araly1|485830|fgenesh2_kg.5__1822__AT3G54320.1 2023 0.0
> Ahg485830 jgi|Araly1|485830|fgenesh2_kg.5__1822__AT3G54320.1
Length=1397
Score = 2023 bits (1095), Expect = 0.0
Identities = 1269/1350 (94%), Gaps = 24/1350 (2%)
Strand=Plus/Plus
Query 112 TTTCTCAGAGTTTAATGAAGAAGCGCTTAACCacttccacttgttcttcttctccatctt 171
|||| |||| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 72 TTTCCCAGATTTTAATGAAGAGGCGCTTAACCACTTCCACTTCTTCTTCTTCTCCATCTT 131
Query 172 cctctgtttcttcttctactactacttcctctcctattcAGTCGGAGGCTCCAAGGCCTA 231
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 132 CCTCTGTTTCTTCTTCTACTACTACTTCCTCTCCTATTCAATCGGAGGCTCCCAGGCCTA 191
Query 232 AACGAGCCAAAAGGGCTAAGAAATCTTCTCCTTCTGGTGATAAATCTCATAACCCGACAA 291
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 192 AACGAGCCAAAAGGGCTAAGAAATCTTCTCCTTCTGGTGATAAATCACATAACCCGACAA 251
Query 292 GCCCTGCTTCTACCCGACGCAGCTCTATCTACAGAGGAGTCACTAGACATAGATGGACTG 351
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 GCCCTGCTTCTACCAGACGCAGCTCTATCTACAGAGGAGTCACTAGACATAGATGGACTG 311
Query 352 GGAGATTCGAGGCTCATCTTTGGGACAAAAGCTCTTGGAATTCGATTCAGAACAAGAAAG 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 GGAGATTCGAGGCTCATCTTTGGGACAAAAGCTCTTGGAATTCGATTCAGAACAAGAAAG 371
Query 412 GCAAACAAGTTTATCTGGGAGCATATGACAGTGAAGAAGCAGCAGCACATACGTACGATC 471
|||||| | | |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 372 GCAAAC-A----A----GGAGCATATGACAGCGAAGAAGCAGCAGCACATACGTACGATC 422
Query 472 TGGCTGCTCTCAAGTACTGGGGACCCGACACCATCTTGAATTTTCCGGCAGAGACGTACA 531
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 423 TGGCTGCTCTCAAGTACTGGGGACCCGATACCATCTTGAATTTTCCGGCAGAGACGTACA 482
Query 532 CAAAGGAATTGGAAGAAATGCAGAGAGTGACAAAGGAAGAATATTTGGCTTCTCTCCGCC 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 CAAAGGAATTGGAAGAAATGCAGAGAGTGACAAAGGAAGAATATTTGGCTTCTCTCCGCC 542
Query 592 GCCAGAGCAGTGGTTTCTCCAGAGGCGTCTCTAAATATCGCGGCGTCGCTAGGCATCACC 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 GCCAGAGCAGTGGTTTCTCCAGAGGCGTCTCTAAATATCGCGGCGTCGCTAGGCATCACC 602
Query 652 ACAACGGAAGATGGGAGGCTCGGATCGGAAGAGTGTTTGGGAACAAGTACTTGTACCTCG 711
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 603 ATAACGGAAGATGGGAGGCTCGGATTGGAAGAGTGTTTGGGAACAAGTACTTGTACCTCG 662
Query 712 GCACCTATAATACGCAGGAGGAAGCTGCTGCAGCATATGACATGGCTGCGATTGAGTATC 771
||||||| ||||||||||||||||||||||| || ||||| ||||| ||||| |||||||
Sbjct 663 GCACCTACAATACGCAGGAGGAAGCTGCTGCGGCGTATGATATGGCGGCGATAGAGTATC 722
Query 772 GAGGCGCAAACGCGGTTACTAATTTCGACATTAGTAATTACATTGACCGGTTAAAGAAGA 831
|||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 723 GAGGGGCTAACGCGGTTACTAATTTCGACATTAGTAATTACATCGACCGGTTAAAGAAGA 782
Query 832 AAGGTGTTTTCCCGTTCCCTGTGAACCAAGCTAACCATCAAGAGGGTATTCTTGTTGAAG 891
||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||
Sbjct 783 AAGGTGTTTTCCCGTTCCCTGTGAACCAACCTAATCATCAAGAGGCTATTCTTGTTGAAG 842
Query 892 CCAAACAAGAAGTTGAAACGAGAGAAGCGAAGGAAGAGCCTagagaagaagtgaaacaac 951
||||||||||| | |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 843 CCAAACAAGAAATCGAAACGAGAGAAGCTAAAGAAGAGCCTAGAGAAGAAGTGAAACAAC 902
Query 952 agtacgtggaagaaccaccgcaagaagaagaagagaaggaagaagagaaagcagagcaac 1011
||||||||||||||||||| |||||||| ||| ||||| |||| || || ||||||||||
Sbjct 903 AGTACGTGGAAGAACCACCACAAGAAGA-GAA-AGAAG-AAGA-GA-AA-GCAGAGCAAC 956
Query 1012 aagaagcagagattgtaggatattcagaagaagcagcAGTGGTCAATTGCTGCATAGACT 1071
||||||||||| ||||||||||| ||| |||| || ||||||||||||||||||||||
Sbjct 957 AAGAAGCAGAGTTTGTAGGATATAAAGATGAAGGGGCGGTGGTCAATTGCTGCATAGACT 1016
Query 1072 CTTCAACCATAATGGAAATGGATCGTTGTGGGGACAACAATGAGCTGGCTTGGAACTTCT 1131
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CTTCAGCCATAATGGAAATGAATCGTTGTGGGGACAACAATGAGCTGGCTTGGAACTTCT 1076
Query 1132 GTATGATGGATACAGGGTTTTCTCCGTTTTTGACTGATCAGAATCTCGCGAATGAGAATC 1191
||||||||||| |||||||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct 1077 GTATGATGGATTCAGGGTTTGCTCCGTTTTTGACGGATCAGAATCTCTCGAATGAGAATC 1136
Query 1192 CCATAGAGTATCCGGAGCTATTCAATGAGTTAGCATTTGAGGACAACATCGACTTCATGT 1251
|||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1137 CCATCGAGTATCCGGAGCTTTTCAATGAGTTAGCATTTGAGGATAACATTGACTTCATGT 1196
Query 1252 TCGATGATGGGAAGCACGAGTGCTTGAACTTGGAAAATCTGGATTGTTGCGTGGTGGGAA 1311
|||| || | |||| |||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1197 TCGACGAAGCGAAGAACGACTGCTTGAGCTTGGAAAATCTGGATTGTTGCGTGGTGGGAA 1256
Query 1312 GAGAGAGCCCACCCTCTTCTTCTTCACCATTGTCTTGCTTATCTACTGACTCTGCTTCAT 1371
||||||||||| | ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1257 GAGAGAGCCCAACTTCTTCGTCTTCACCATTGTCTTGCTTTTCTACTGACTCTGCTTCAT 1316
Query 1372 caacaacaacaacaacaacCTCGGTTTCTTGTAACTATTTGTTTCAGGGCTTGTTCGTTG 1431
|||||||||||||||| | ||||||||||||||||||||| || |||||||||||
Sbjct 1317 CAACAACAACAACAAC--C-TCGGTTTCTTGTAACTATTTG-----GG-CTTGTTCGTTG 1367
Query 1432 GTTCTGAATAATCAATGTCTTTGCCCCTTT 1461
|||| |||||||||||||||||||||||||
Sbjct 1368 GTTCCGAATAATCAATGTCTTTGCCCCTTT 1397
Score = 111 bits (60), Expect = 1e-23
Identities = 70/74 (95%), Gaps = 4/74 (5%)
Strand=Plus/Plus
Query 1 CAGGGTTTATTTAACTTGCCCTTTCTCGTTTCCTCCtttttttCTTAAACCACTCTGCTT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 CAGGGTTTATTTAACTTGCCCTTTCTCGTTTCCTCCTTTTTTTCTTAAACCACTCT--T- 57
Query 61 CCT-CTTCCTCTGA 73
||| ||||||||||
Sbjct 58 CCTTCTTCCTCTGA 71
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55002313780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5