BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54340.1
Length=1037
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485833 jgi|Araly1|485833|fgenesh2_kg.5__1825__AT3G54340.1 1578 0.0
> Ahg485833 jgi|Araly1|485833|fgenesh2_kg.5__1825__AT3G54340.1
Length=1031
Score = 1578 bits (854), Expect = 0.0
Identities = 982/1039 (95%), Gaps = 27/1039 (3%)
Strand=Plus/Plus
Query 13 TCTTCTCATTATATCTCTTGTCCTCTCCACCAAA--TCTCTTCAACAAAAAGATTAAACA 70
|||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 4 TCTTCTCAATATATCTCTTGTCCTCTCCATCAAATCTCTCTTCAACAAAAAGATTAAACA 63
Query 71 AAGAGAGAAGAATATGGCGAGAGGGAAGATCCAGATCAAGAGGATAGAGAACCAGACAAA 130
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 AAGAGAGAAGAACATGGCGAGAGGGAAGATCCAGATCAAGAGGATAGAGAACCAGACAAA 123
Query 131 CAGACAAGTGACGTATTCAAAGAGAAGAAATGGTTTATTCAAGAAAGCACATGAGCTCAC 190
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 124 CAGACAAGTGACGTATTCAAAGAGAAGAAATGGTTTGTTCAAGAAAGCACATGAGCTCAC 183
Query 191 GGTTTTGTGTGATGCTAGGGTTTCGATTATCATGTTCTCTAGCTCCAACAAGCTTCATGA 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 GGTTTTGTGTGATGCTAGGGTTTCGATTATCATGTTCTCTAGCTCCAACAAGCTTCATGA 243
Query 251 GTATATCAGCCCTAACACCACAACGAAGGAGATCGTAGATCTGTACCAAACTA-TTTCTG 309
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 244 GTATATCAGCCCTAACACCACAACGAAGGAGATCGTAGATCTGTACCAAAC-AGTTTCTG 302
Query 310 ATGTCGATGTTTGGGCCACTCAATATGAGCGAATGCAAGAAACCAAGAGGAAACTGTTGG 369
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 303 ATGTTGATGTTTGGGCCACTCAATATGAGAGAATGCAAGAAACCAAGAGGAAACTGTTGG 362
Query 370 AGACAAATAGAAATCTCCGGACTCAGATCAAGCAGAGGCTAGGTGAGTGTTTGGACGAGC 429
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 363 AGACAAATAGAAATCTCCGGACTCAGATTAAGCAGAGGCTAGGTGAGTGTTTGGACGAGC 422
Query 430 TTGACATTCAGGAGCTGCGTCGTCTTGAGGATGAAATGGAAAACACTTTCAAACTCGTTC 489
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 423 TTGACATTCAGGAGCTGCGTCGTCTTGAGGATGAAATGGATAACACTTTCAAACTCGTTC 482
Query 490 GCGAGCGCAAG-TTCAAATCTCTTGGGAATCAGATCGAGACCACCAAGAAAAAGAACAAA 548
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GCGAGCGCAAGATT-AAATCTCTTGGGAATCAGATCGAGACCACCAAGAAAAAGAACAAA 541
Query 549 AGTCAACAAGACATACAAAAGAATCTCATACATGAGCTGGAACTAAGAGCTGAAGATCCT 608
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 AGTCAACAAGACATACAAAAGAATCTCATACATGAGCTGGAACTAAGAGCTGAAGATCCC 601
Query 609 CACTATGGACTAGTAGACAATGGAGGAGATTACGACTCAGTTCTTGGATACCAAATCGAA 668
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 602 CACTATGGACTAGTAGACAATGGAGGAGATTACGACTCAGTTCTTGGATATCAAATCGAA 661
Query 669 GGGTCACGTGCTTACGCTCTTCGTTTCCACCAGAACCATCACCACTATTACCCCAACCAT 728
||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 662 GGGTCGCGTGCTTACGCTCTTCGTTTCCACCAGAACCATCACCACCATTACCCAAACCAT 721
Query 729 GGCCTTCATGCACCCTCTGCCTCTGACATCATTACCTTCCATCTTCTTGAATAATTAAAG 788
| ||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| |
Sbjct 722 GCCCTTCATGCTCCCTCTGCCTCTGACATCATCACCTTCCACCTTCTTGAATAATTAAGG 781
Query 789 GCTAAAAGGTTTGCTGGTGCC-AT--CATTGTCTATCTAATTATTTAGTAACTACTTAAA 845
||||||||||||| |||| || || |||| |||||||||||| | ||||||||||||
Sbjct 782 GCTAAAAGGTTTGTTGGT-CCTATATCATTCTCTATCTAATTA---A-TAACTACTTAAA 836
Query 846 A-CATAAGG-CATGGTGTTGCTAAAACCTTAAACTGTCATGTTTCTTAGTTATGTATTTT 903
| || || | | ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 837 AGCA-AACGAC-TGGTGTTGCTAAAACCTTAAACTGTTATGTTTCTTAGTTATGTATTTT 894
Query 904 AAAGCCTAAAGAAATATGGATTGTGTGATCAGTA--G-T-GCT--T-AGGCTTATTGTGT 956
||||||| || | |||||||||||||||||||| | | ||| | |||||||||||||
Sbjct 895 AAAGCCTTAA-AC-TATGGATTGTGTGATCAGTATAGCTTGCTGCTTAGGCTTATTGTGT 952
Query 957 GTGGAATGTTTTCAAGACTTTTATCATGTATCGTATTATTATATTGACCACTCTACTTAA 1016
||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 953 GTGAAATGTTATCAAGACTTTTATCATGTATCATATTATTATATTGACCACTCTACTTAA 1012
Query 1017 TTATGCTACAAATTTACTC 1035
||||||| || || |||||
Sbjct 1013 TTATGCTCCATATCTACTC 1031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38580392004
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5