BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54350.1
Length=2661
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938355 jgi|Araly1|938355|scaffold_502546.1 3293 0.0
> Ahg938355 jgi|Araly1|938355|scaffold_502546.1
Length=2165
Score = 3293 bits (1783), Expect = 0.0
Identities = 2047/2171 (94%), Gaps = 31/2171 (1%)
Strand=Plus/Plus
Query 319 GTCTGGTTGTGCAGTGAACATGGGGGCTCTTGCTCAAGTTGTTCCGTGGATACCCGAAGA 378
||||||||||| |||| |||||||||||||||| || || ||||||||||||||||||||
Sbjct 3 GTCTGGTTGTGTAGTGGACATGGGGGCTCTTGCCCAGGTAGTTCCGTGGATACCCGAAGA 62
Query 379 CGACCTGCTGCTAAAGAATGCTGTCGAGGCTGGTGCTTCTTTGGAATCGCTTGCTAAAGG 438
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 63 CGACCTGCTGCTAAAGAATGCCGTCGAGGCCGGTGCTTCTTTGGAATCGCTTGCTAAAGG 122
Query 439 TGCTGTGCAGTTTTCTAGAAGATTTTCTATTAGAGAATTGCAAGATCGATGGCATGCACT 498
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 123 TGCTGTGCAGTTTTCTAGAAGATTTTCTATCAGAGAACTGCAAGATCGATGGCATGCACT 182
Query 499 GCTTTATGATCCAGTAGTTTCTGTAGAGGCGGCTTTTCGGATGGCTGAGCTTGAACGTAC 558
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 183 GCTTTATGATCCAGTAGTTTCTGCCGAGGCGGCTTTTCGGATGACTGAGCTTGAACGTAC 242
Query 559 TAACCCTAATTTTCCTACTAAGTTTGGTAGAACTGGATATTCAAAAGAAAACAAAAGTTC 618
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 243 TAACCCTAATTTTCCTACAAAGTTTGGTAGAACTGGATATTCAAAAGAAAACAAAAGCTC 302
Query 619 ATCTAGGAAGAGGAATGCTGAAAGGCTCAGAAGTACTTATCATTCCTTGCGGAAGAAATT 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 ATCTAGGAAGAGGAATGCTGAAAGGCTCAGAAGTACTTATCATTCCTTGCGGAAGAAATT 362
Query 679 TAGGACTGAGCCATTCAATTCCTTGGATCTAGGTTTCCTCGTTCCACCAAATGATAGCCA 738
| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 363 TCGGACTGAGCCATTTAATTCCTTGGATCTAGGTTTCCTCGTACCACCAAATGATAGCCA 422
Query 739 TTTCATGGATAATGGTGATGCAACACATCTTGGTCTTGAGGACTCTCACATGGATATTAT 798
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 423 TTTCATGGATAATGGTGATGCAACAAATCTTGGTCTTGAGGACTCTCACATGGATATTAT 482
Query 799 CCACAACGCGTTTCCAGAAATCTTGGCTGAAGGTGGTTGCGTGACAACTCATGTTCTGCC 858
||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||
Sbjct 483 CCACAACGCGTTTCCAGAAATCTTGGCTGAAAGCGGTTGCGTGACAACTCATGTTGTGCT 542
Query 859 AGAAGATAATTTACAGGGAGACATTCCTTACGTAGAAGGAGAAAATCTCACATTCACTGA 918
|||||| |||||||| || ||||||| || |||| ||||||||||||||||||||||||
Sbjct 543 GGAAGATGATTTACAGAGAAACATTCCATATGTAGGAGGAGAAAATCTCACATTCACTGA 602
Query 919 ACACGCAGGTCTATCAGTATGTGATGTGGTTCATCAAGATTCCGAGCAGAAACTAGAGAA 978
||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 ACATGCAGGTCCATCAGGATGTGATGTGGTTCATCAAGATTCCGAGCAGAAACTAGAGAA 662
Query 979 TACTGCTCACGAGGCAAAAAACACAATGGCTAGCACTGATTTCCTGGCACAGCTTTCAAC 1038
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 663 TACTGCTCACGAGGCAATAACCACAATGGCTAGCACTGATTTCCTGGCACAGCTTTCAAC 722
Query 1039 TTCTCTTTTCGAAGAAGACATGGAACCGTTCATGGAAGTAGATGGCAAAGAAGTTGACAA 1098
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 723 TTCTCTTTTCGAAGAAGACGTGGAACCGTTCATGGAAGTAGATGGCAAAGAAGTTGACAA 782
Query 1099 GTCATATTATGATGGTCTTAGCTCACTGTTGGTGAACTCTACAAATGATACAAACCGCGA 1158
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 783 GTCATATTATGATGGTCTTAGCTCACTGTTGGTGAACTCAACAAATGATACAAATCGCGA 842
Query 1159 GGCTTTTCCTAACCCCACCGAGCAAGAACCTTCCATTGCACCAACTCATCCAGGAGAGGC 1218
||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||| ||
Sbjct 843 GGCTTTTCCTAACTCCACCGAGCAAGATCCTTCCATTGCACCAACTCATTCAGGAGATGC 902
Query 1219 AACCCTGGATGATCATGTGATGCTTGAGCTAGATGGTACAAT--C----GC-T-T--T-- 1266
||| ||||||||||||||||||||||||||||||||||||| | || | | |
Sbjct 903 AACTATGGATGATCATGTGATGCTTGAGCTAGATGGTACAATTGCAATTGCATCTGCTTT 962
Query 1267 AGATCCTCATCCTGAGATTGTTGGGGGTGTAATCTGCTGTTTATTAAACGAAGAGGATCC 1326
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 963 AGATCCTCATCCTGAGATTGTTGGGGGTGTAATCTGCTGTTTATTAAACCAAGAGGATCC 1022
Query 1327 TGATATTCCGTGTAATGATGACATTTTCCTGTCCAACAACTCCCGTCCGATGTCAGTTTC 1386
|||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||
Sbjct 1023 TGATATTCCGTGTAATGATGACATTTTCCTATCCAACAACTCCCATCCAATGTCAGTTTC 1082
Query 1387 TTCTTTAGCCCGGCGGAACTTTAAGGATACCAATAGTCCAATAACTACATGTGTAAGAGA 1446
||| |||||| |||||||||||||||||||||||| |||| ||||||||||||| |||||
Sbjct 1083 TTCCTTAGCCAGGCGGAACTTTAAGGATACCAATAATCCATTAACTACATGTGTTAGAGA 1142
Query 1447 CGTCTCCGCCAGTAAGGAAAAAAGTGAGGGATATTCACTCCAGGCTCAAAAGAAAAAACC 1506
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1143 CCTCTCCGCCAGTAAGGAAAAAAGTGAGGGATATTCACTCCAGACTCAAAAGAAAAACCC 1202
Query 1507 AGGACGTTTACAGGGGTCTACTCAAGGAAAGCCAGAGATGGGCCAACCAAGTAAAGGTAG 1566
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1203 AGGACGTTTACAGGGGTCTACTCAAGGAAAGCCAGAGATGGGCCAACCAAGTCAAGCTAG 1262
Query 1567 CAAATTCAGGGCATCGACTAGTACTGAGTTAAAGAATACTGTAGCTCCTGGTGGTTCTTC 1626
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1263 CAAATTCAGGGCATCGACTAGTGCTGAGTTAAAGAATACTGTAGCTCCTGGTGGTTCTAC 1322
Query 1627 CT---CTG---C---ACAGGCTTGCTCTAATACTCTACTTTCTACTGGTACCGGTGCAAA 1677
|| ||| | |||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1323 CTGTTCTGTGTCTGCACAGGCATGCTCTAATACTCTGCTTTCTACTGGTACCGGTGCAAA 1382
Query 1678 AGATGGAAAGAAAGAAACTGCTACTGGAACACTCTTTGTCGGATCTGATGGCCATGGCAA 1737
||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||
Sbjct 1383 AGATGGAAAGAAAGAAACTGCTAGTGTAACACTCTTTGTCGGTTCTGATGGCCATGGCAG 1442
Query 1738 CCACCCAG-AGAAGGATAGTGAAAATTGTAAAGAGAAAAATGTTGTACCACCTGTTAATG 1796
| | | || |||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1443 CTATC-AGGAGAAGGATAGTGAAAACTGTAAAGAGAAAAATGTTGTACTACCTGTTAATG 1501
Query 1797 AATCGCCACATGCTAAAGATACTGATGATGGCTTGATAGAGATTACAGTCCCTGAGCTGG 1856
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1502 AATCGCCACATGCTAAAGATACTGCTGATGGCTTGATAGAGATTACAAACCCTGAGCTGG 1561
Query 1857 AGATCACCCGTGCAGAAGCAGAAGCAGAAGCAGAAGCGCATGTTTGTGAGAGTGATGAGG 1916
||||||| |||||||||||||||| |||||| | | |||||||||||||||||||||
Sbjct 1562 AGATCACTCGTGCAGAAGCAGAAGTAGAAGC-G---C--ATGTTTGTGAGAGTGATGAGG 1615
Query 1917 ACTTACCCAATTATTCTGACATTGAGGCTATGATACTTGACATGGACTTGGAACCTGATG 1976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 ACTTACCCAATTATTCTGACATTGAGGCTATGATACTTGACATGGACTTGGAACCTGATG 1675
Query 1977 ATCAAGATAATTTTGATCTCGAAGTCT-CCAAGTATCAGAGCCAAGACATGAAAAGAACA 2035
||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||
Sbjct 1676 ATCAAGATAATTTTGATCTCGAAGT-TGCCAAGTATCAGAGCCAGGACATGAAAAGAACA 1734
Query 2036 ATCATAAGACTTGAGCAGGCTGCTCATTCATATATGCAAAGAGCCATTGCTTCCCGTGGT 2095
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1735 ATCATAAGACTTGAGCAGGCTGCTTATTCATATATGCAAAGAGCCATTGCTTCCCGTGGT 1794
Query 2096 GCATTCGCTGTTTTATATGGCAGATATTCAAAACACTATATCAAGAAGCCTGAGGTTTTG 2155
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1795 GCATTAGCTGTTTTATATGGTAGATATTCAAAACACTACATCAAGAAGCCTGAGGTTTTG 1854
Query 2156 GTGGGTAGATCAACAGAAGACCTCGCTGTGGACATTGATTTGGGAAGAGAAAAGCGGGGT 2215
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855 GTGGGTAGATCAACAGAGGACCTCGCTGTGGACATTGATTTGGGAAGAGAAAAGCGGGGT 1914
Query 2216 AGCAAAATATCTCGACGACAGGCGATCATACGGCTGGGTGATGACGGTTCGTTTCATATA 2275
||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 1915 AGCAAAATATCTCGACGACAGGCAATCATACGGCTGGGTGATGATGGGTCGTTTCATATG 1974
Query 2276 AAAAACCTGGGGAAGTATTCAATCTCAGTAAATGAGAAGGAAGTAGATCCTGGACAGAGT 2335
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1975 AAAAATCTGGGGAAGTATTCAATATCAGTAAATGAGAAGGAAGTAGATCCTGGACAGAGT 2034
Query 2336 TTAATCCTCAAATCCGATTGTCTAGTTGAGATACGGGGAATGCCTTTTATATTTGAAACA 2395
|| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 2035 TTGATCCTCAAATCCGATTGTCTAGTTGAGATTCGGGGAATGCCTTTCATATTTGAAACA 2094
Query 2396 AACCAAAGTTGCATGCAAGAGTACCTGAAGAGAAGAGGGAAAGTGAACTGAGACCAGATC 2455
||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||| |
Sbjct 2095 AACCAAAGTCGCATGCAAGAGTACCTGAAGAGAACAGGGAAACTGAACTGAGACCAGAAC 2154
Query 2456 AAGAGTGCGTG 2466
|||||||||||
Sbjct 2155 AAGAGTGCGTG 2165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100367795575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5