BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54380.1
Length=1364
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485838 jgi|Araly1|485838|fgenesh2_kg.5__1830__AT3G54380.1 2001 0.0
> Ahg485838 jgi|Araly1|485838|fgenesh2_kg.5__1830__AT3G54380.1
Length=1356
Score = 2001 bits (1083), Expect = 0.0
Identities = 1270/1359 (93%), Gaps = 18/1359 (1%)
Strand=Plus/Plus
Query 12 TGGGACTTGGGAGGGAAGAAGATCTCGTTCCCTCTAAGCCATGAATCGTCGTAATCGTGG 71
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1 TGGGACTTGGGAGGGAAGAAGATCTCGTTGCCTCTAAGCCATGGATCGTCGTAATCGTGG 60
Query 72 Ctcttcttctt---cttcttctAGGGTTTCGAATACTTATGGGAACCGCCAGTTCTCTGA 128
||||||||||| || |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 61 CTCTTCTTCTTCCGCTACTTCTAGGGTTTCGAATACTTATGGGAATCGCCAGACCTCTGA 120
Query 129 TAACCCGAGGACTGGATCCGGCGGCGGAGTTAATGAATCCTTTCAGAGAAGATCCGATGC 188
||||||||||||||||||||||||||||| |||||| ||||| | |||||||||||||||
Sbjct 121 TAACCCGAGGACTGGATCCGGCGGCGGAGCTAATGATTCCTTACGGAGAAGATCCGATGC 180
Query 189 ACCGCACAAACGAAACAATGAAAAAGACGAATCAAAAC-ATAAAGACGAAGATCCTGCTG 247
||| | ||||||||||||||| |||||||||| |||| |||| || | |||||||||||
Sbjct 181 ACCACTCAAACGAAACAATGACGAAGACGAATC-AAACTATAAGGAAGGAGATCCTGCTG 239
Query 248 ACGTTTCATTGATTGTAGGAACTTGTTCTTCTATGTGCCCAGAGAGGGAAAGAGTCACAA 307
||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ACGTTTCCTTCATCATAGGAACTTGTTCTTCTATGTGCCCAGAGAGGGAAAGAGTCACAA 299
Query 308 GAGAACGCCTGCGTGATCTTGCAGTGTTTGAGAGGCTTTATGGAAACCCCTCAAAATCAT 367
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGGAACGCCTGCGTGATCTTGCAGTGTTTGAGAGGCTTTATGGAAACCCCTCAAAATCAT 359
Query 368 CCACAGAGATAGCTGTCAAAAAGTTTTGCAGAACCCTTTCAGCGGCGGATGTTCAGGCAT 427
||||||| ||||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 360 CCACAGATCTAGCTGTCAAAAAGTTTTGTAGAACTCTTTCAGCAGCGGATGTTCAGGCAT 419
Query 428 CGGATGTAAGACCGCTCCCAGTTTTAGAAGAAACCCTGAGATACCTTCTAAGTTTGCTCG 487
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
Sbjct 420 CGGATGTAAGACCGCTCCCAGTTTTAGAAGAAACCCTAACATACCTTCTAAGTTTGCTTG 479
Query 488 ACTCCAAGGAGCACCCGTTTGAAGTGGTTCATGATTTTATTTTCGATAGGACAAGGTCTA 547
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACTCCAGGGAGCACCTGTTTGAAGTGGTTCATGATTTTATTTTCGATAGGACAAGGTCTA 539
Query 548 TTAGACAAGATCTTAGCATCCAGAATTTGGCCAATGAGAGAGTGATCTACCTTTATGAGG 607
|||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||
Sbjct 540 TTAGACAAGATCTTAGCATCCAGAATCTAGCCAATGAGAGAGTGATCTACCTTTACGAGG 599
Query 608 AAATGGTAAAATTTCATGTCATATCTCACGAGAGGCTTCAAAGTTGTAGTGGTACAAGTA 667
||||||| ||||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct 600 AAATGGTTAAATTTCATGTGATATCTCACAAGAGGCTTCAGAGTTGTAGTGGTACAAGTA 659
Query 668 TTAGCTCAATGCATCACTTGAACATGGAGCAGCTAGCAAAAACTCTTACCTCTTTGTATA 727
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 660 TTAGCTCAATGCATCACTTGAACATGGAGCAGCTAGCAAAAACGCTTACCTCTTTGTATA 719
Query 728 ATATATATGATGCAAATAGAAAACCGGACTATATCTACGAAAATGAAGCCGAGTTCCGCT 787
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 720 ATATATATGATGCAAATAGGAAACCGGATTATATCTACGAAAATGAAGCCGAGTTCCGCT 779
Query 788 CACTCTATGTGCTGCTTCATCTCAAT-CCTAGTAGTGGAGTGATGGGGGAACCGCTGTCT 846
|| ||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 780 CATTCTATGTGCTGCTTCATCTCAATTCC-AGTAGTGGAGTGATGGGGGAACCGCTATCT 838
Query 847 TTATGGTTTCGCAAGTTGACTTTTGCTTTGGTAAAATCCAAGGAAATATGTTTTGTACGA 906
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 839 CTATGGTTTCGCAAGTTAACTTTTGCTTTAGTAAAATCCAAGGAAATATGTTTTGTACGA 898
Query 907 AACCTTTTAAGATTATATCGGATGGGCAATTACAAGAACTTCTTAAGTAGAACAGCTTCT 966
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AATCTTTTAAGATTATATCGGATGGGCAATTACAAGAACTTCTTAAGTAGAACAGCTTCT 958
Query 967 GAGGCGACATACTTGCAGTATTGCATAAGTGAACATCATATTAGAGAGATGCGATTAGTG 1026
|||||||||||||| ||||||||||||||||||| | |||||||||||||||||| |||
Sbjct 959 GAGGCGACATACTTACAGTATTGCATAAGTGAACCTTATATTAGAGAGATGCGATCAGTC 1018
Query 1027 GCTGTCCAATACATAAACAATGTTTGCTACAAGCTTCAACCCTATCCTCTCTTGCGGTTA 1086
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1019 GCTGTCCAATACATAAACAATGTTTGCTACAAGCTTCAACCTTATCCTCTCTTGCGGTTA 1078
Query 1087 TCTCAGAACCTGAAGATGAAGGAGTTGGATGTTGAATCTTTATGCCATGAGTGTGGTCTT 1146
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1079 TCTCAGAACCTGCTGATGAAGGAGTTGGATGTTGAATCTCTATGCCATGAGTGTGGTCTT 1138
Query 1147 GAGACATGTACTGATCCTGATGGGTTCACTGTTTTACCCGTGAAGCAGTCAACCTTTCGT 1206
|||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||
Sbjct 1139 GAGACATGTACTGATCCTGATGGGTTCACTGTGTTACCTGCGAAGCAGTCAACCTTTCGT 1198
Query 1207 AGTCCAGAGGACAAGTTCAAAGTTTATGATTTGATTGGAATTGAACGGATT-AAGATGTC 1265
| ||||||||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 1199 AATCCAGAGGACAAGTTCAAAGTTTATGATTTGATTGGAATTGAACGGATTGAAAA-GTA 1257
Query 1266 GATTTGAACCTCTTGCATGTTGT--A-----A--TGCTTCATACTCTCTTATGATAAGAA 1316
| ||||||||||| | |||||| | | |||||||||||||||| | |||||||
Sbjct 1258 GTTTTGAACCTCTGGTTTGTTGTTTATGTGTAAATGCTTCATACTCTCTTCTTATAAGAA 1317
Query 1317 GAAATTGAATTTCTAAAACACCTAAGTTATATAATCTTA 1355
|||||||||||||||||||||| ||||||||| ||||||
Sbjct 1318 GAAATTGAATTTCTAAAACACCAAAGTTATATGATCTTA 1356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51046585863
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5