BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54390.1
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485840 jgi|Araly1|485840|fgenesh2_kg.5__1832__AT3G54390.1 1506 0.0
> Ahg485840 jgi|Araly1|485840|fgenesh2_kg.5__1832__AT3G54390.1
Length=1238
Score = 1506 bits (815), Expect = 0.0
Identities = 930/985 (94%), Gaps = 10/985 (1%)
Strand=Plus/Plus
Query 244 CTTGTCTCTGTTTTTAGTCACCTGAAGAAAAAATATATGGAGAACGGAGAATCTAACCAA 303
|||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 167 CTTGTCTCTGTTTTAACTCACCTGAAGAAAAAATATATGGAGAACGGAGAATTTAACCAA 226
Query 304 GAAAATCTCAAATCTCTCAACCACGACGAATCGCT-TAAGAAGCCATCTGCTTCCTCCGT 362
|||||||||||||||||||||||||||||||| | |||||| || ||||||||||||||
Sbjct 227 GAAAATCTCAAATCTCTCAACCACGACGAATC-ATCTAAGAAACCCTCTGCTTCCTCCGT 285
Query 363 CGTTGTAGATAGGTTAAAACGTGATGAATGGAGCGAAGGAGCTGTTTCGACTTTACTCGA 422
|||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||| ||
Sbjct 286 CGTTGTGGATAGGTTAAAGCGTGATGAATGGAGCGAAGGAGCTGTTTCGAGTTTACTTGA 345
Query 423 AGCTTATGAGTCAAAATGGGTTCTCAGAAACAGAGCCAAGCTTAAGGGACAAGACTGGGA 482
||| || |||||||||||||||||||| |||||||||||||| ||||| || ||||||||
Sbjct 346 AGCCTACGAGTCAAAATGGGTTCTCAGGAACAGAGCCAAGCTCAAGGGTCAGGACTGGGA 405
Query 483 AGACGTGGCTAAACACGTGTCCTCACGCGCCACTCACACCAAGTCACCAAAGACTCAGAC 542
||||||||||| |||||||||||||||||||||||| |||||||| || |||||||| ||
Sbjct 406 AGACGTGGCTAGACACGTGTCCTCACGCGCCACTCAAACCAAGTCTCCGAAGACTCAAAC 465
Query 543 TCAGTGCAAGAACAAGATCGAGTCCATGAAGAAACGGTACCGTTCTGAGTCCGCTACTGC 602
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 ACAGTGCAAGAACAAGATCGAGTCCATGAAGAAACGGTACCGTTCTGAGTCCGCTACTGC 525
Query 603 TGATGGCTCCTCTTGGCCTCTTTATCCTCGTCTTGATCATCTCCTACGTGGAACTC-AGC 661
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||
Sbjct 526 TGATGGCTCCTCTTGGCCTCTTTATTCTCGTCTTGATCATCTCCTCCGTGGAACTCAAG- 584
Query 662 CTC-AGCCTCAGCCTCAAGCTGTTCTGCCTCTGAATTGCTCTGTTCCTCTGCTCTTACTT 720
||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 585 CTCAAG-CTCAGCCTCAGGCTGTTCTGCCTCTGAATTGCTCTGTTCCTCTGCTCTTACTC 643
Query 721 GAGCCGCCGTTGCCTGCGGTGGCTCATCCGCCGCAGATTTCTTACGGATCCAACGGCGTC 780
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 GAGCCGCCGTCGCCTGTGGTGGCTCATCCGCCGCAGATTTCTTACGGATCCAACGGCGTC 703
Query 781 GGCAAGATTCCTAAGGAAGACGGATTCAAGCCGGAG-AACAAACCGGAAAAAGATG-CGG 838
|||||||||||||||||||| ||||||||||||||| || || |||||||||| | |||
Sbjct 704 GGCAAGATTCCTAAGGAAGATGGATTCAAGCCGGAGCAA-AAGCCGGAAAAAG-CGACGG 761
Query 839 AGATGGATACAGACAGTAGTACGCCTGTGGTTAAAACgaaggtgagagggaagaaagtga 898
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 762 AGATGGACACAGACAGTAGTACGCCGGTGGTTAAAACGAAGGTGAGAGGGAAGAAAGTGA 821
Query 899 agagaagatataaagaagagaaggaagagaTCGCCGGAAGTATACGGTGGTTAGCGGAGG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 AGAGAAGATATAAAGAAGAGAAGGAAGAGATCGCCGGAAGTATACGGTGGTTAGCGGAGG 881
Query 959 TGGtgatgagatcagagagagcaagaatggagacgatgaaagagatagagagaatgagag 1018
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 TGGTGATGAGATCTGAGAGAGCAAGAATGGAGACGATGAAAGAGATAGAGAGAATGAGAG 941
Query 1019 ctgaagctgaagctaagagaggagaaTTGGATTTGAAACGGACGGAGATAATGGCGAATA 1078
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 942 CTGAAGCTGAAGCTAAGAGAGGAGAAATGGATTTGAAACGAACGGAGATAATGGCGAATA 1001
Query 1079 CTCAGCTAGAGATTGCTAGAATCTTTGCTGCTGCAGCTTCTTCTGGACAGAACAAAGGTG 1138
|||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||||||
Sbjct 1002 CTCAGCTAGAGATTGCTAGACTCTTTGCAGTTGCAGCTTCGTCTGGACAGAACAAAGGTG 1061
Query 1139 TTGATTCTTCATTAAGGATCGGAAGAAATTGAGTTCTGCTTTTTATATTGGAGACTCAAG 1198
|||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct 1062 TTGATTCTTCATTAAGGATCGGAAGAAATTGAGTTCTGTTTTTTTTATGGGAGACTCAAA 1121
Query 1199 ATGTTGTGTGTACATACCAAGTGTT 1223
|||| ||||||||||||||||||||
Sbjct 1122 ATGTCGTGTGTACATACCAAGTGTT 1146
Score = 265 bits (143), Expect = 7e-70
Identities = 164/174 (94%), Gaps = 1/174 (1%)
Strand=Plus/Plus
Query 40 TTAGCTTTAAGTCACGAGGCACGACCATTGAACATGCGAGAAACGCGTGTACCCAAACTC 99
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 TTAGCTTTAAGTCACGAGTCACGACCATTGAACATGCAAGAAACGCGTGTACCCAAACTC 60
Query 100 ATTGGTTAGTTTTGAGAGCAGCAGCGTATTCTTACACAGTTCTCATATGTTTAACTCCAT 159
||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||
Sbjct 61 ATTGGTTAGTTTTGAGACCAGCAGCGAATTCTTACACAGTTCTCATATGTTAAACTCCAT 120
Query 160 TCACTCTCTCAAAAGGTTCCCATCTTTATCAAAAGACTTGCTAAAATCTTCTCT 213
|||||||||||||| |||||||||| ||||||| |||||||||||| ||| |||
Sbjct 121 TCACTCTCTCAAAAAGTTCCCATCTCTATCAAACGACTTGCTAAAA-CTTGTCT 173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50169758772
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5