BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54400.1
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938360 jgi|Araly1|938360|scaffold_502551.1 2220 0.0
> Ahg938360 jgi|Araly1|938360|scaffold_502551.1
Length=1318
Score = 2220 bits (1202), Expect = 0.0
Identities = 1280/1318 (97%), Gaps = 4/1318 (0%)
Strand=Plus/Plus
Query 26 AAATCAAGGTCTTAAACAATGAGATCCCATCTCTTGATTTTGTTAATCTCTCTCTTAATC 85
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 AAATCAAGATCTTAAACAATGAGATCCCATCTCTTGATTTTGTTAATCTCTCTCTTAATC 62
Query 86 TTGAAATCTGAATCCATAAACTGCAATGAAAAGAGCCATTCCTCAGATCTAAGAGTGTTC 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 TTGAAATCTGAATCCATAAACTGCAATGAAAAGAGCCATTCCTCAGATCTAAGAGTGTTC 122
Query 146 CACATTAACAGTCTATGTTCTCCATTCAAAACTTCTGTTTCATGGGCAGATACACTTCTT 205
||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 123 CACATTAACAGTCAATGTTCTCCATTCAAAACTTCTGTCTCATGGGAAGATACACTTCTT 182
Query 206 CAAGATAAGGCTCGTTTCCTATACTTGTCAAGCCTCGCTGGCGTTAGGAAATCATCAGTT 265
||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 183 CAAGACAAGGCTCGTTTCCTATACTTGTCAAGCCTCGCCGGCGTTAAGAAATCATCAGTC 242
Query 266 CCAATCGCCTCTGGTCG-GGCCATCGTTCAGAGCCCGACTTACATCGTGAGGGCTAACAT 324
||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||
Sbjct 243 CCAATCGCCTCTGGTCGCGGC-ATCGTTCAGAGCCCGACTTATATCGTGAGGGCTAACAT 301
Query 325 CGGGACACCGGCTCAGCCCATGCTCGTGGCTCTTGACACTAGCAATGACGCTGCTTGGAT 384
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CGGGACACCGGCTCAGGCCATGCTCGTGGCTCTTGACACTAGCAATGACGCTGCTTGGAT 361
Query 385 TCCTTGTTCTGGCTGCGTTGGCTGTTCTTCCTCTGTTCTCTTTGACCCTTCCAAGTCAAG 444
|||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 362 TCCTTGTTCTAGCTGCGTTGGTTGTTCTTCCTCAGTTCTCTTTGACCCTTCCAAGTCAAG 421
Query 445 CTCCTCTCGTACTCTTCAATGCGAAGCTCCTCAGTGTAAACAGGCTCCAAATCCAAGTTG 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 CTCCTCTCGTACTCTTCAATGCGAAGCTCCTCAGTGTAAACAGGCTCCAAATCCAAGTTG 481
Query 505 CACAGTAAGCAAATCATGTGGTTTCAACATGACCTACGGTGGTTCAACCATCGAAGCATA 564
||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 482 CACCGTAAGCAAATCATGTGGTTTCAACATGACCTACGGTGGTTCAGCAATCGAAGCATA 541
Query 565 TCTGACACAAGACACACTAACATTGGCCAGTGACGTCATCCCAAACTACACCTTTGGGTG 624
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 542 TCTGACACAAGACACACTAACATTGGCCACTGACGTCATCCCAAACTACACCTTTGGGTG 601
Query 625 CATCAACAAAGCTAGTGGAACATCGTTGCCAGCGCAAGGACTCATGGGCTTAGGTCGTGG 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 CATCAACAAAGCTAGTGGAACATCGTTGCCAGCGCAAGGACTCATGGGCTTAGGTCGTGG 661
Query 685 TCCATTGTCTTTAATCTCACAGTCACAAAATCTTTATCAGTCTACATTCTCGTATTGCTT 744
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 662 TCCATTGTCTTTAATCTCACAGTCACAAAATCTTTACCAGTCTACATTCTCGTATTGCTT 721
Query 745 GCCTAATAGTAAGTCCAGCAATTTCTCCGGATCACTAAGATTGGGACCTAAGAACCAACC 804
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 722 GCCTAATAGTAAGTCCAGCAATTTCTCCGGATCGCTAAGATTGGGACCTAAGAACCAACC 781
Query 805 GATCCGGATCAAGACCACTCCATTGTTAAAGAACCCTAGAAGATCATCGCTTTACTATGT 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GATCCGGATCAAGACCACTCCATTGTTAAAGAACCCTAGAAGATCATCGCTTTACTATGT 841
Query 865 TAACTTGGTTGGGATTCGTGTCGGAAACAAAATTGTGGATATTCCTACAAGTGCACTCGC 924
|||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 842 TAACTTGGTTGGAATTCGTGTCGGGAATAAAATTGTGGATATTCCTACAAGTGCACTAGC 901
Query 925 CTTTGATCCGGCCACCGGAGCCGGCACCATCTTTGACTCGGGGACGGTCTACACAAGGCT 984
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 902 CTTTGATCCGGCCACCGGAGCCGGCACCATCTTTGACTCCGGGACGGTCTACACGAGGCT 961
Query 985 AGTCGAACCAGCTTACGTGGCGGTGAGAAACGAGTTCAGGAGACGTGTTAAGAACGCAAA 1044
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 962 AGTCGAACCAGCTTACGTGGCGGTGAGAAACGAGTTCAGGCGACGAGTTAAGAACGCAAA 1021
Query 1045 CGCAACTTCACTAGGAGGTTTCGACACATGCTACTCCGGCTCCGTCGTGTTCCCGTCGGT 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 CGCAACTTCACTAGGAGGTTTCGACACATGCTACTCCGGCTCCGTCGTGTTCCCGTCGGT 1081
Query 1105 GACGTTTATGTTCGCCGGAATGAACGTGACTCTGCCTCCAGACAACCTTCTCATCCACAG 1164
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1082 GACGTTTATGTTCGCCGGAATGAACGTGACTCTGCCTCCGGACAACCTTCTCATCCACAG 1141
Query 1165 CTCCGCAGGTAACCTCAGCTGCCTCGCCATGGCTGCAGCTCCGGTCAACGTTAACTCTGT 1224
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1142 CTCCGCAGGTAACCTCAGCTGCCTCGCCATGGCTGCAGCTCCGACCAACGTTAACTCTGT 1201
Query 1225 CCTTAACGTCATCGCTAGTATGCAGCAACAGAACCACCGAGTTCTCATCGACGTTCCAAA 1284
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1202 CCTTAACGTCATCGCTAGTATGCAACAACAGAACCACCGTGTTCTCATCGACGTTCCAAA 1261
Query 1285 TTCCAGGCTCGGAATTTCCCGTGAAACTTGCACCTAAGttttatcg-atttgtatttt 1341
|||||||||||| ||||||||||||||||||||||||||||||||| ||| || ||||
Sbjct 1262 TTCCAGGCTCGGCATTTCCCGTGAAACTTGCACCTAAGTTTTATCGGATT-GTGTTTT 1318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58201894360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5