BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54410.1
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926309 jgi|Araly1|926309|scaffold_201870.1 383 1e-105
Ahg898379 jgi|Araly1|898379|Al_scaffold_0005_2345 383 1e-105
> Ahg926309 jgi|Araly1|926309|scaffold_201870.1
Length=575
Score = 383 bits (207), Expect = 1e-105
Identities = 414/509 (81%), Gaps = 34/509 (7%)
Strand=Plus/Plus
Query 205 CCGGCGCCAAAAGTAGAATTAGCTTCTATGGACTTCATGGTGCTTAATATCACATAGACT 264
|||| ||||||||||||||||||||||||||| |||| |||||||||||||||| | |||
Sbjct 85 CCGGTGCCAAAAGTAGAATTAGCTTCTATGGATTTCACGGTGCTTAATATCACACAAACT 144
Query 265 CGTCTTAGTGCAAAGTGGGATTTGTCCATAAGGATCCCTGCAGA-TCTTCCTGGTGACTA 323
||||||||||||||||||||||||||||||||||||||| | | |||||||||| | ||
Sbjct 145 CGTCTTAGTGCAAAGTGGGATTTGTCCATAAGGATCCCTA-ATAATCTTCCTGGTCAGTA 203
Query 324 TATATGTCTTCAAGGAGA-CTTTCAAGTTTCATTTCTTTACAAGAATGTTACTCTCTTTA 382
|||||| ||||||||||| ||| |||| ||||||||||||||| |||| ||||||| ||
Sbjct 204 TATATGCCTTCAAGGAGAACTT-CAAGCTTCATTTCTTTACAAAAATGCTACTCTCGCTA 262
Query 383 CCTCACCTCCACAAAAGTAAGCTGTTTACTAT-TAACAACCTCCGATACCGCTGTCCTCA 441
||||| | |||||||| || || || || | | ||| | | || | |||||
Sbjct 263 CCTCATCACCACAAAAATA--CT----ACAATCTCA-AACG-C--A-ACAA-T--CCTCA 308
Query 442 GCTTCTTAAAGTTTCTGTTGTTGTCTCCGACGAAAACATTAG---TTCGATTGGAACATA 498
||||||||| ||||| | ||||| ||||| ||| | | | || |||||||| | |
Sbjct 309 GCTTCTTAAGGTTTCAGCGGTTGTTTCCGAAGAAGATGTCGGCGGTTTGATTGGAAAAGA 368
Query 499 CATTATGGAAGATGTCAAAGAGAAGAAGCAAGTA-ACTTTTGGATTGCAGTTTTCTCTTA 557
||||||||||||| |||||||||||||| ||||| | || |||| || |||||||||||
Sbjct 369 CATTATGGAAGATATCAAAGAGAAGAAGGAAGTACAATTC-GGATCGCGGTTTTCTCTTA 427
Query 558 CCGATTGCAGAAAAAAGACGTTAGGAGTTATGAGTTATGCATGCTG-TGGAGTCACCTTG 616
| ||||||||| ||||||| |||| ||||||| ||||| ||| | || ||||||||||
Sbjct 428 CTGATTGCAGAGAAAAGACAACAGGAATTATGAGCTATGCGTGC-GATGAAGTCACCTTG 486
Query 617 AGGTTCGAACCCGGATCT-GAGATGAAGGCGT-CTGTGTTTGGAAAGCATCCAAGGTACA 674
||||||||||| |||| | ||||||||||| | |||||||||| | ||||||| || ||
Sbjct 487 AGGTTCGAACCTGGAT-TAGAGATGAAGGC-TACTGTGTTTGGCGACCATCCAAAGTGCA 544
Query 675 -CAAATTTCTGA-CCAAGTCCACGTCAAC 701
||| ||| ||| || |||| |||| |||
Sbjct 545 TCAACTTT-TGAACCGAGTCTACGT-AAC 571
> Ahg898379 jgi|Araly1|898379|Al_scaffold_0005_2345
Length=318
Score = 383 bits (207), Expect = 1e-105
Identities = 286/323 (89%), Gaps = 10/323 (3%)
Strand=Plus/Plus
Query 368 ATGTTACTCTCT-TTACCTCACCTCCACAAAAGTAAGCTGTTTACTATT--AACAACCTC 424
|||||||||| | ||| ||| ||||||||||||||||| |||| | || ||||| |||
Sbjct 1 ATGTTACTCT-TGCTACATCATCTCCACAAAAGTAAGCTATTTA-T-TTACAACAATCTC 57
Query 425 CGATACCGC-TGTCCTCAGCTTCTTAAAGTTTCTGTTGTTGTCTCCGACGAAAACATTAG 483
||||||| || |||||||||||||||||||||| ||||||||||||||| | ||| |
Sbjct 58 AAATACCGCTTG-CCTCAGCTTCTTAAAGTTTCTGCGGTTGTCTCCGACGAAGATATTGG 116
Query 484 TTCGATTGGAACATACATTATGGAAGATGTCAAAGAGAAGAAGCAAGTAACTTTTGGATT 543
|||||||||||||| || |||||||||||||||||||| |||||||||||| |||||||
Sbjct 117 TTCGATTGGAACATGCAGTATGGAAGATGTCAAAGAGAGGAAGCAAGTAACGTTTGGATC 176
Query 544 GCAGTTTTCTCTTACCGATTGCAGAAAAAAGACGTTAGGAGTTATGAGTTATGCATGCTG 603
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 177 ACAGTTTTCTCTTACCGATTGCAGAAAAAAGACGTCAGGAGTTATGAGTTATGCATGCCA 236
Query 604 TGGAGTCACCTTGAGGTTCGAACCCGGATCTGAGATGAAGGCGTCTGTGTTTGGAAAGCA 663
|| ||| ||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 237 TGAAGTGACCTTGAGGTTCGAACCCGGATCCGATATGAAGGCGTCTGTGTTTGGGAAGCA 296
Query 664 TCCAAGGTACACA-AATTTCTGA 685
|||||||| || | |||||||||
Sbjct 297 TCCAAGGTGCA-AGAATTTCTGA 318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34844346138
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5