BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G54410.1 Length=939 Score E Sequences producing significant alignments: (Bits) Value Ahg926309 jgi|Araly1|926309|scaffold_201870.1 383 1e-105 Ahg898379 jgi|Araly1|898379|Al_scaffold_0005_2345 383 1e-105 > Ahg926309 jgi|Araly1|926309|scaffold_201870.1 Length=575 Score = 383 bits (207), Expect = 1e-105 Identities = 414/509 (81%), Gaps = 34/509 (7%) Strand=Plus/Plus Query 205 CCGGCGCCAAAAGTAGAATTAGCTTCTATGGACTTCATGGTGCTTAATATCACATAGACT 264 |||| ||||||||||||||||||||||||||| |||| |||||||||||||||| | ||| Sbjct 85 CCGGTGCCAAAAGTAGAATTAGCTTCTATGGATTTCACGGTGCTTAATATCACACAAACT 144 Query 265 CGTCTTAGTGCAAAGTGGGATTTGTCCATAAGGATCCCTGCAGA-TCTTCCTGGTGACTA 323 ||||||||||||||||||||||||||||||||||||||| | | |||||||||| | || Sbjct 145 CGTCTTAGTGCAAAGTGGGATTTGTCCATAAGGATCCCTA-ATAATCTTCCTGGTCAGTA 203 Query 324 TATATGTCTTCAAGGAGA-CTTTCAAGTTTCATTTCTTTACAAGAATGTTACTCTCTTTA 382 |||||| ||||||||||| ||| |||| ||||||||||||||| |||| ||||||| || Sbjct 204 TATATGCCTTCAAGGAGAACTT-CAAGCTTCATTTCTTTACAAAAATGCTACTCTCGCTA 262 Query 383 CCTCACCTCCACAAAAGTAAGCTGTTTACTAT-TAACAACCTCCGATACCGCTGTCCTCA 441 ||||| | |||||||| || || || || | | ||| | | || | ||||| Sbjct 263 CCTCATCACCACAAAAATA--CT----ACAATCTCA-AACG-C--A-ACAA-T--CCTCA 308 Query 442 GCTTCTTAAAGTTTCTGTTGTTGTCTCCGACGAAAACATTAG---TTCGATTGGAACATA 498 ||||||||| ||||| | ||||| ||||| ||| | | | || |||||||| | | Sbjct 309 GCTTCTTAAGGTTTCAGCGGTTGTTTCCGAAGAAGATGTCGGCGGTTTGATTGGAAAAGA 368 Query 499 CATTATGGAAGATGTCAAAGAGAAGAAGCAAGTA-ACTTTTGGATTGCAGTTTTCTCTTA 557 ||||||||||||| |||||||||||||| ||||| | || |||| || ||||||||||| Sbjct 369 CATTATGGAAGATATCAAAGAGAAGAAGGAAGTACAATTC-GGATCGCGGTTTTCTCTTA 427 Query 558 CCGATTGCAGAAAAAAGACGTTAGGAGTTATGAGTTATGCATGCTG-TGGAGTCACCTTG 616 | ||||||||| ||||||| |||| ||||||| ||||| ||| | || |||||||||| Sbjct 428 CTGATTGCAGAGAAAAGACAACAGGAATTATGAGCTATGCGTGC-GATGAAGTCACCTTG 486 Query 617 AGGTTCGAACCCGGATCT-GAGATGAAGGCGT-CTGTGTTTGGAAAGCATCCAAGGTACA 674 ||||||||||| |||| | ||||||||||| | |||||||||| | ||||||| || || Sbjct 487 AGGTTCGAACCTGGAT-TAGAGATGAAGGC-TACTGTGTTTGGCGACCATCCAAAGTGCA 544 Query 675 -CAAATTTCTGA-CCAAGTCCACGTCAAC 701 ||| ||| ||| || |||| |||| ||| Sbjct 545 TCAACTTT-TGAACCGAGTCTACGT-AAC 571 > Ahg898379 jgi|Araly1|898379|Al_scaffold_0005_2345 Length=318 Score = 383 bits (207), Expect = 1e-105 Identities = 286/323 (89%), Gaps = 10/323 (3%) Strand=Plus/Plus Query 368 ATGTTACTCTCT-TTACCTCACCTCCACAAAAGTAAGCTGTTTACTATT--AACAACCTC 424 |||||||||| | ||| ||| ||||||||||||||||| |||| | || ||||| ||| Sbjct 1 ATGTTACTCT-TGCTACATCATCTCCACAAAAGTAAGCTATTTA-T-TTACAACAATCTC 57 Query 425 CGATACCGC-TGTCCTCAGCTTCTTAAAGTTTCTGTTGTTGTCTCCGACGAAAACATTAG 483 ||||||| || |||||||||||||||||||||| ||||||||||||||| | ||| | Sbjct 58 AAATACCGCTTG-CCTCAGCTTCTTAAAGTTTCTGCGGTTGTCTCCGACGAAGATATTGG 116 Query 484 TTCGATTGGAACATACATTATGGAAGATGTCAAAGAGAAGAAGCAAGTAACTTTTGGATT 543 |||||||||||||| || |||||||||||||||||||| |||||||||||| ||||||| Sbjct 117 TTCGATTGGAACATGCAGTATGGAAGATGTCAAAGAGAGGAAGCAAGTAACGTTTGGATC 176 Query 544 GCAGTTTTCTCTTACCGATTGCAGAAAAAAGACGTTAGGAGTTATGAGTTATGCATGCTG 603 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 177 ACAGTTTTCTCTTACCGATTGCAGAAAAAAGACGTCAGGAGTTATGAGTTATGCATGCCA 236 Query 604 TGGAGTCACCTTGAGGTTCGAACCCGGATCTGAGATGAAGGCGTCTGTGTTTGGAAAGCA 663 || ||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||| Sbjct 237 TGAAGTGACCTTGAGGTTCGAACCCGGATCCGATATGAAGGCGTCTGTGTTTGGGAAGCA 296 Query 664 TCCAAGGTACACA-AATTTCTGA 685 |||||||| || | ||||||||| Sbjct 297 TCCAAGGTGCA-AGAATTTCTGA 318 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34844346138 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5