BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54420.1
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485842 jgi|Araly1|485842|fgenesh2_kg.5__1834__AT3G54420.1 1338 0.0
> Ahg485842 jgi|Araly1|485842|fgenesh2_kg.5__1834__AT3G54420.1
Length=865
Score = 1338 bits (724), Expect = 0.0
Identities = 818/865 (95%), Gaps = 0/865 (0%)
Strand=Plus/Plus
Query 11 CTCAACAACATCAAAATGTTGACTCCCACCATTTCTAAATCCATCTCTTTAGTAACCATT 70
|||||||| |||||||||||||||| ||| ||||||||| |||||||||| |||||||||
Sbjct 1 CTCAACAAAATCAAAATGTTGACTCACACAATTTCTAAAGCCATCTCTTTGGTAACCATT 60
Query 71 CTATTAGTTCTACAAGCTTTCTCTAACACAACAAAGGCTCAAAATTGCGGTTGTTCGTCA 130
||||||| |||||||||||||| || |||||||||||||||||| |||||||||||||||
Sbjct 61 CTATTAGCTCTACAAGCTTTCTATATCACAACAAAGGCTCAAAACTGCGGTTGTTCGTCA 120
Query 131 GAGCTATGTTGTAGTCAGTTTGGCTTTTGCGGTAACACTTCAGACTATTGTGGTGTAGGT 190
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGCTATGCTGTAGTCAGTTTGGCTTTTGCGGTAACACTTCAGACTATTGTGGTGTAGGT 180
Query 191 TGCCAACAAGGACCTTGTTTTGCTCCTCCCCCTGCAAATGGTGTCTCTGTGGCTGAGATT 250
||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 181 TGCCAACAAGGGCCTTGTTTTGCTCCTCCTCCTGCTAATGGTGTGTCTGTGGCTGAGATT 240
Query 251 GTAACGCAAGAATTCTTCAATGGAATCATCAGTCAAGCCGCGTCTAGTTGCGCCGGCAAT 310
|| |||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 241 GTTACGCAAGATTTTTTCAATGGAATCATTAGTCAAGCCGCGTCTAGTTGCGCAGGCAAT 300
Query 311 AGATTTTACAGTCGGGGAGCTTTTCTTGAGGCCTTAGACTCATATTCTCGTTTCGGTAGA 370
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGTTTTTACAGTCGAGGAGCTTTTCTTGAGGCCTTAGACTCATATTCTCGTTTCGGTAGA 360
Query 371 GTTGGATCGACCGACGACTCTAGGCGTGAGATTGCAGCGTTCTTTGCTCATGTCACACAT 430
||||||||||| || |||||||| |||||||| |||||||||||||||||||| || |||
Sbjct 361 GTTGGATCGACTGATGACTCTAGACGTGAGATCGCAGCGTTCTTTGCTCATGTTACGCAT 420
Query 431 GAAACAGGACATTTCTGCTACATAGAAGAGATAGACGGAGCCTCAAAGGATTACTGCGAC 490
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 GAAACTGGACATTTCTGCTACATAGAAGAGATAGACGGAGCCGCAAAGGATTACTGCGAC 480
Query 491 GAGAATGCAACACAATATCCATGCAATCCTAACAAAGGCTACTACGGCCGCGGACCGATC 550
|||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 GAGAATTCAACGCAATATCCATGCAATCCTAACAAAGGCTATTACGGCCGCGGACCGATC 540
Query 551 CAACTCTCTTGGAATTTCAACTACGGGCCAGCCGGGACAGCAATTGGTTTCGACGGCCTG 610
|||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||
Sbjct 541 CAACTCTCTTGGAATTTCAACTACGGGCCAGCTGGAACCGCAATTGGTTTTGACGGCCTC 600
Query 611 AATGCACCGGAAACAGTAGCCACGGATCCAGTCATATCCTTCAAAACCGCCTTGTGGTAC 670
||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 601 AATGCACCGGAAACAGTAGCCACAGATCCGGTCATATCCTTCAAGACCGCCTTGTGGTAC 660
Query 671 TGGACCAATAGGGTTCAGCCTGTTATCTCTCAAGGTTTTGGTGCAACAATCCGTGCCATT 730
||||| ||| |||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 661 TGGACAAATCGGGTTCAGCCTGTTCTCTCTCAAGGTTTTGGTGCAACAATCCGAGCCATT 720
Query 731 AACGGTGCTTTGGAGTGTGACGGGGCCAACACAGCCACCGTTCAAGCTAGAGTTCGTTAC 790
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AACGGTGCTTTAGAGTGCGACGGGGCCAACACAGCCACCGTTCAAGCTAGAGTTCGTTAC 780
Query 791 TACACGGATTATTGTCGTCAACTTGGCGTTGATCCTGGAAACAACCTCACTTGCTAACAA 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TACACGGATTATTGTCGTCAACTTGGCGTTGATCCTGGAAACAACCTCACTTGCTAACAA 840
Query 851 AAACATCTATTTCTCTGTATACATA 875
|||||||||||||| ||||||||||
Sbjct 841 AAACATCTATTTCTTTGTATACATA 865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32442602367
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5