BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54430.1
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485843 jgi|Araly1|485843|fgenesh2_kg.5__1835__AT3G54430.1 1175 0.0
> Ahg485843 jgi|Araly1|485843|fgenesh2_kg.5__1835__AT3G54430.1
Length=846
Score = 1175 bits (636), Expect = 0.0
Identities = 781/844 (93%), Gaps = 38/844 (5%)
Strand=Plus/Plus
Query 40 ctctctctctGTTTCTCACTACTCTTACTAGACTCCTCCATAGCTAAGCTCCACCTACTA 99
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCTCTCTGTTTCTCACTACTCTCACTAGACTCCTCCATAGCTAAGCTCCACCTACTA 60
Query 100 GATTAGCCTCCACGCGCTTTTATTATTACTACTGCCACAGTGGCAAATCCACCTTCTTCC 159
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 61 GATTAGCCTCCACGCGCTTTTA-TATTACTTCTGCCACAGTGGCAAATCCACCTTCTTCC 119
Query 160 CTCTCATGG------CCACCACAACCATCATCATCTTCAACACCTTTCGCCGCCGTCTCA 213
||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 120 CTCTCATGGCCACCACCACCACAACCATCACCATCTTCAACACCTTTCGCCGGCGTCTCA 179
Query 214 ATCCCACCTGATCACTCTTCCTCCTCCGTCGCCGCCGTTGGAATCAGTACTACTCCAGAC 273
|||||||||| | | | |||||||||||||||| ||||||||||
Sbjct 180 ATCCCACCTG---A----------T---T--CCGCCGTTGGAATCAG---TACTCCAGAC 218
Query 274 TACATGTTAGGTCTTCGAAACATCATTCTCTTATCTCCACCACCGACGCAGAT---AACA 330
||||||||||||||||||||||||||||||||| |||||||| | ||||||| ||||
Sbjct 219 TACATGTTAGGTCTTCGAAACATCATTCTCTTACCTCCACCA-C--CGCAGATAACAACA 275
Query 331 CGGCCATCT-CTTCCTCCGGTAAACTTCGCGGCGGTGGAAGACAACAACACAGTTGGAGA 389
|||| ||| ||| ||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 276 CGGCTGTCTCCTT-CTCCGGTAAACATAGCGGCGGTGGAAGACAACAACACAGTTGGAGA 334
Query 390 GAAAGTATGCAGAGACTGTGGAAACAGAGCAAAGAAAGAGTGTTTGTTCGAAAGATGTAG 449
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 335 GAAAGTATGCAGAGACTGTGGAAACAGAGCAAAGAAAGAGTGTTTGTTCGAAAGGTGTAG 394
Query 450 AACTTGTTGTAAAAGCAGAGGATACAACTGTGTCACTCACGTGAAGAGCACGTGGATTCC 509
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 AACATGTTGTAAAAGCAGAGGATACAACTGTGTCACTCACGTGAAGAGCACGTGGATTCC 454
Query 510 TTCTTCTGCAACTCGTTCTTCATCTTCTCCTTCTGAGAGGAAGAAGAAGCTCAAAATCGA 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 455 TTCTTCTGCAACTCGTTCTTCATCTTCTCCTTCTGAGAGGAAGAAGAAGCTCAAACTCGA 514
Query 570 TAAACAGAGTTCCCCTAATGTCTCGCTACTTCCGACAACCACTTCTCGTCAAGAGAGAGG 629
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 515 TAAACAGAGTTCCGCTAATGTCTCGCCGCTTCCGACAACCACTTCTCGTCAAGAGAGAAG 574
Query 630 CTTCAGAGAGGGGTTACCGGGGAAAATTGAAGCTCCGGCGGTTTTTAAACGGACGAGAGT 689
||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 575 CTTCAAAGAGGGGTTACCGGGGAAAATTGAAGCTCCGGCAGTTTTTAAACGGACAAGAGT 634
Query 690 AACAGCGATAAGCAACAACGAGCAAGCAGAGATTGGTTATCAAGCAACAGTAACTATAAG 749
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 635 AACAGCGATAAGCAACAACGAGCAAGCAGAGATTGGTTATCAAGCAACTGTAACCATAAG 694
Query 750 TGGTCATATCTTCAAAGGCTTTCTTCATTACTATGGTGTTGATCATAACAAAGCTTTTCC 809
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 TGGTCATGTCTTCAAGGGCTTTCTTCATTACTATGGTGTTGATCATAACAAAGCTTTTCC 754
Query 810 ATGTCTTTCTCAAAAATGATGGAAACTACTTCATAGGATTCTGTGTATAAAGTTTCTCTG 869
||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||
Sbjct 755 ATGTCTTTCTCAAAAATGATGAAAACTACTTCATAGGATTCTGTATATA--GTTTCTCTG 812
Query 870 TTTT 873
||||
Sbjct 813 TTTT 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35301821142
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5