BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54450.1
Length=1736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348537 jgi|Araly1|348537|fgenesh1_pg.C_scaffold_5001929 2693 0.0
Ahg936986 jgi|Araly1|936986|scaffold_501177.1 340 2e-92
Ahg936985 jgi|Araly1|936985|scaffold_501176.1 259 4e-68
> Ahg348537 jgi|Araly1|348537|fgenesh1_pg.C_scaffold_5001929
Length=1668
Score = 2693 bits (1458), Expect = 0.0
Identities = 1599/1669 (96%), Gaps = 2/1669 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGATTCGACCTCCCTCATCAATAAACGAACCAAAGGAGGCTGGAACGCTGCCCTT 60
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGCAGATTCAACCTCCATCATCAATAAACGAACCAAAGGAGGCTGGAACGCTGCCGTT 60
Query 61 TTCATCATCGTTGTGGAGATAGCAGAGAGATTTGCGTTCTACGGTCTTGCAAGCAACCTA 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCATCATCGTTGTGGAGATGGCAGAGAGATTTGCGTTCTACGGTCTTGCAAGCAACCTA 120
Query 121 ATAACGTTTCTAACAAACGAACTTGGCCAGTCCACGGCCACCGCAGCCAAAAACATCAAC 180
|||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 121 ATAACGTTTCTAACCAACGAGCTTGGCCAGTCCACGGCCACCGCAGCCAAACACATCAAC 180
Query 181 ACATGGATCGGTGTTTCTTGCATGTTCCCCATTCTCGGGGCGTTTCTAGCTGACTCCATC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 ACATGGATCGGTGTTTCTTGCATGTTCCCCATTCTCGGGGCGTTTCTAGCTGACTCAATC 240
Query 241 CTAGGCCGCTTCAAAACCGTTCTCTTGACCTCTTTCATCTATCTCTTGGGGATTGTCATG 300
||||||||||||||||||||||||||||| |||||| | ||||||||||| || ||||||
Sbjct 241 CTAGGCCGCTTCAAAACCGTTCTCTTGACTTCTTTCGTTTATCTCTTGGGAATGGTCATG 300
Query 301 TTGCCATTGTCGGTGACGGTGGTGGCGCGGCGGATGAGAGAAAAAGTGTTCTTTATGGCA 360
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 301 TTGCCATTGTCGGTGACGGTGGTGGCGCCGCGGATGAGAGAAAAAGTGTTATTTATGGCA 360
Query 361 TTGTATGTGATGGCGGTTGGAGAAGGAGGGCATAAACCATGCGTCATGACCTTTGCAGCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 TTGTATGTGATGGCGGTTGGAGAAGGAGGGCATAAACCATGCGTCATGACCTTCGCAGCT 420
Query 421 GACCAGTTTGGAGAGGCCAATGCGGAAGAGAAAGCAGCAAAGACATCTTTCTTCAATTAT 480
|| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 421 GATCAGTTTGGAGAGGCCAATCCGGAAGAGAAAGCAGCAAAGACTTCTTTCTTCAATTAT 480
Query 481 TGGTATATGGCCATAGTCCTCGCTTCTTCCATAGCTGTTCTTGCACTCATCTTCATTCAG 540
|||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 481 TGGTATATGGCCATCGTCCTAGCTTCTTCCATAGCTGTTCTTGCCCTCATCTTCATTCAG 540
Query 541 GAACGAGTGAGTTGGTCACTAGGATTCAGCATAATAGCAGGAAGTGTGGTGATAGCTATA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAACGAGTGAGTTGGTCACTAGGATTCAGCATAATAGCAGGAAGTGTGGTGATAGCTATA 600
Query 601 GTGATATTTCTGATAGGAATTCCAAAATATCGAAAACAAGTTCCGGTGGGAAGTCCCTTC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 601 GTGATATTTCTGATAGGAATTCCAAAATATCGAAAACAAGTTCCGGTGGGAAGTCCCCTC 660
Query 661 ACGAGGGTTGCTCAGGTCATGGTGGCTGCTCTGAAAAAATGGCGATTGAGCTCCACGCGC 720
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 661 ACGAGGGTTGCTCAGGTCATCGTCGCTGCTCTGAAAAAATGGCGATTGAGCTCCACGCGC 720
Query 721 CACCACTACGGCCTCTGCTACGAGGAGGAGGATGAGCACAAGTTGGAGTCAACAAATTCT 780
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 721 CACCACTACGGCCTCTGCTACGAGGAGGAGGATGAGCACAAGTCGGAGTCAACAAATTCT 780
Query 781 AATCAAGTATATCTTCTTGCCAGAACAAATCAATTCAGATTTCTTGATAAAGCTACAATT 840
|||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 781 AATCAAATATATCTTCTTGCCAGAACCAATCAATTCAGATTTCTTGACAAAGCTACAATT 840
Query 841 ATTGACGAGATTGATCATAACAAAAATAGAAACCCGTGGAGGTTATGTACTGTGAACCAA 900
|| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 841 ATCGATGAGATTGATCATAACAAAAATAGAAACCCATGGAGGTTATGTACCGTGAACCAA 900
Query 901 GTGGAAGAAGTAAAGCTAATATTGAGGCTCATACCAATTTGGATAAGCTTGATAATGTTC 960
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 901 GTGGAAGAAGTAAAGCTAATATTGAGGCTCATGCCAATTTGGATAAGCTTGATAATGTTC 960
Query 961 TGTGCCACACTCACTCAGCTCAACACATTCTTTTTAAAGCAAGGAAGTATGATGGACAGA 1020
||||||||||| |||||||||||||||||||| |||||||||||||| |||||| |||||
Sbjct 961 TGTGCCACACTTACTCAGCTCAACACATTCTTCTTAAAGCAAGGAAGCATGATGAACAGA 1020
Query 1021 ACCATTGG-GAATCACTTCACCATTCCTCCTGCTGCTTTCCAAAGCATTGTTGGTGTCAC 1079
|||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ACCATTGGAGA-TCACTTCACTATTCCTCCTGCTGCTTTCCAAAGCATTGTTGGTGTCAC 1079
Query 1080 TATCCTCATCCTTATTCCTCTTTATGACCGAGTTTTTGTCCCTATGGTTCGTAAGATCAC 1139
|||||||||||| |||||||| |||||||||||||||||||||||| | |||||||||||
Sbjct 1080 TATCCTCATCCTCATTCCTCTCTATGACCGAGTTTTTGTCCCTATGATCCGTAAGATCAC 1139
Query 1140 CAATCACCATTCTGGAATCACATCTCTCCAGAGAATCGGTGTTGGCTTATTTGTTGCTAC 1199
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1140 CAATCACCATTCTGGAATCACATCTCTTCAGAGGATCGGTGTTGGCTTATTTGTCGCTAC 1199
Query 1200 TTTCAATATGGTGATATGTGGGCTTGTGGAGGCAAAGAGACTTAAAGTTGCAAGAGATCA 1259
||| || ||| ||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1200 TTTTAACATGATGATATGTGGGCTTGTGGAGGCAAAGAGACTTAGAGTTGCAAGTGATCA 1259
Query 1260 TGGATTAATCGACTCTCCAAAAGAAGTTGTTCCAATGAGTAGCTTGTGGTTACTGCCCCA 1319
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1260 TGGATTAATTGACTCTCCGAAAGAAGTTGTTCCAATGAGTAGCTTGTGGTTACTTCCCCA 1319
Query 1320 ATACATACTAGTTGGTATTGGAGACGTTTTCACTATTGTTGGTATGCAAGAGCTTTTCTA 1379
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1320 ATACATACTAGTTGGTATTGGAGATGTATTCACTATTGTTGGTATGCAAGAGCTTTTCTA 1379
Query 1380 TGATCAAATGCCTGAAACTATGAGAAGTATTGGTGCAGCGATCTTTATTAGCGTTGTTGG 1439
|||||||||||||||||||||||||||||| ||||| || ||||||||| |||| |||||
Sbjct 1380 TGATCAAATGCCTGAAACTATGAGAAGTATCGGTGCTGCAATCTTTATTGGCGTCGTTGG 1439
Query 1440 AGTCGGGAGTTTTGTTAGTACCGGGATTATATCTACCGTTCAAACAATCAGCAAAAGCCA 1499
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1440 AGTCGGGAGTTTTGTTAGTACCGGGATTATATCAACCGTTCAAACAATCAGCAAAAGCCA 1499
Query 1500 CGGTGAAGAATGGCTCGTCAACAACCTTAACAGAGCACATCTTGATTACTACTATTGGAT 1559
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1500 CGGTGAAGAATGGCTCGTCAACAACCTTAACAAAGCACATCTTGATTACTACTATTGGAT 1559
Query 1560 AATCGCATCGCTAAATGCTGTGAGCCTCTGCTTTTATCTGTTTATAGCTAACCATTTTCT 1619
|||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| |
Sbjct 1560 AATCGCATCGCTCAATGCTGTTAGCCTCTGCTTTTATCTGTTCATAGCTAACCATTTTGT 1619
Query 1620 CTACAAGAAACTGCAAGACAAAGATGATGATGTTGAAAGCGAAAGATAA 1668
||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1620 CTACAAGAAACTGCAAGACAAAGATGATGATGTTGAAGGCGAAAGATAA 1668
> Ahg936986 jgi|Araly1|936986|scaffold_501177.1
Length=322
Score = 340 bits (184), Expect = 2e-92
Identities = 209/221 (95%), Gaps = 1/221 (0%)
Strand=Plus/Plus
Query 70 GTTGTGGAGATAGCAGAGAGATTTGCGTTCTACGGTCTTGCAAGCAACCTAATAACGTTT 129
||||||||||| || |||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 51 GTTGTGGAGATGGCCGAGACATTTGCGTTCTACGGTCGTGCAAGCAACCTAATAACGTTT 110
Query 130 CTAACAAACGAACTTGGCCAGTCCACGGCCACCGCAGCCAAAA-ACATCAACACATGGAT 188
||| ||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 111 CTATCAAACGAGCTTGGCCAGTCCACGACCACCGCAGCCAAAACACATCAACACATGGAT 170
Query 189 CGGTGTTTCTTGCATGTTCCCCATTCTCGGGGCGTTTCTAGCTGACTCCATCCTAGGCCG 248
||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||
Sbjct 171 CGGTGTTTCTTGCATGTTCCCCATTCTCGGGACGTTTCTAGCCGACTCTATCCTAGGCCG 230
Query 249 CTTCAAAACCGTTCTCTTGACCTCTTTCATCTATCTCTTGG 289
||||||||||||||||||||| |||||||||||||||||||
Sbjct 231 CTTCAAAACCGTTCTCTTGACTTCTTTCATCTATCTCTTGG 271
> Ahg936985 jgi|Araly1|936985|scaffold_501176.1
Length=208
Score = 259 bits (140), Expect = 4e-68
Identities = 173/188 (92%), Gaps = 6/188 (3%)
Strand=Plus/Plus
Query 355 ATGGCATTGTATGTGATGGCGGTTGGAGAAGGAGGGCATAAACCATGCGTCATGACCTTT 414
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 22 ATGGTATTGTATGTGATGGCGGTTGGAGAAGGAGGGCATAAACCATGCGTCACGACCTTC 81
Query 415 GCAGCTGACCAGTTTGGAGAGGCCAATGCGGAAGAGA--AA-GCAGCAAAGACATCTTTC 471
|||||||||| |||||||||||||||| ||||||||| || ||| ||||||||||||||
Sbjct 82 GCAGCTGACCTGTTTGGAGAGGCCAATCCGGAAGAGATTAAAGCATCAAAGACATCTTTC 141
Query 472 T-T-CAATTATTGGTATATGGCCATAGTCCTCGCTTCTTCCATAGCTGTTCTTGCACTCA 529
| | ||||||||||||||||||||| ||||||||||||||| ||||||||||| | ||||
Sbjct 142 TCTTCAATTATTGGTATATGGCCATCGTCCTCGCTTCTTCCGTAGCTGTTCTTCC-CTCA 200
Query 530 TCTTCATT 537
||||||||
Sbjct 201 TCTTCATT 208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65134318950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5