BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54470.1
Length=1679
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938367 jgi|Araly1|938367|scaffold_502558.1 2433 0.0
Ahg937102 jgi|Araly1|937102|scaffold_501293.1 97.1 4e-19
> Ahg938367 jgi|Araly1|938367|scaffold_502558.1
Length=1473
Score = 2433 bits (1317), Expect = 0.0
Identities = 1422/1474 (96%), Gaps = 1/1474 (0%)
Strand=Plus/Plus
Query 38 CCAAAAGCAGCAGAAGAAAAAATGTCAGCCATGGAAGCACTGATTCTCCAGCTGCATGAA 97
|||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct 1 CCAAAAGCAGCAGAAG-AAAAATGTCAGCCATGGAAGCACTGATTCTCCAGCTCCACGAA 59
Query 98 ATCGGCGCCGTGAAATTCGGCAATTTCAAGCTCAAATCTGGAATCTTTTCTCCGGTTTAC 157
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 60 ATCGGCGCCGTGAAATTCGGCAACTTCAAGCTCAAATCCGGAATCTTTTCTCCGGTTTAC 119
Query 158 ATCGACCTTCGtctcatcgtctcttatccatccctcttaacacagatctctcaaactctc 217
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATCGACCTCCGTCTCATCGTCTCTTATCCATCCCTCTTAACACAGATCTCTCAAACTCTC 179
Query 218 atctcttctcttCCACCTTCTGCAACCTTCGACGTCGTCTGTGGTGTTCCTTACACTGCT 277
|||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||
Sbjct 180 ATCTCTTCTCTTCCACCTTCCGCAACCTTCGACGTCATCTGTGGTGTCCCTTACACTGCC 239
Query 278 CTCCCTATCGCCACTGTTGTCTCTGTTTCCAATGGTATCCCTATGCTTATGCGGCGTAAG 337
|||||||||||||| || ||||||||||||||||||||||| ||||||||||| || |||
Sbjct 240 CTCCCTATCGCCACCGTCGTCTCTGTTTCCAATGGTATCCCCATGCTTATGCGTCGCAAG 299
Query 338 GAGATTAAAGACTATGGAACATCTAAAGCTATTGAAGGAATCTTCGAAAAGGATCAAACT 397
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 300 GAGATTAAAGACTATGGAACATCCAAAGCTATTGAAGGAATCTTCGAAAAGGATCAAACT 359
Query 398 TGTTTGATAATTGAAGATCTTGTAACTAGTGGTGCTTCTGTTCTCGAGACTGCTGCTCCT 457
||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||| |||
Sbjct 360 TGTTTGATAATCGAAGATCTTGTAACCAGTGGTGCCTCTGTTCTTGAGACTGCTGCGCCT 419
Query 458 CTTCGTGCTGTGGGGTTAAAGGTTAGTGACGCGGTGGTTTTGATTGATAGGCAACAAGGG 517
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 CTTCGTGCTGTGGGGTTAAAGGTTAGTGACGCGGTGGTTTTGATCGATAGGCAACAAGGT 479
Query 518 GGTAGGGAGAATCTAGCGGAGAATGGGATTAAGTTACATTCGATGATTATGTTGACGGAT 577
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 480 GGTAGGGAGAATCTGGCGGAGAATGGGATTAAGTTACATTCGATGATTATGTTAACGGAT 539
Query 578 ATGGTTAGGGTTTTGAAGGAAAAGGGGAAAATTGAAGTGGAGGTTGAAGTGAATTTGCTT 637
|||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||
Sbjct 540 ATGGTTAGGGTTTTGAAGGAAAAGGGCAAAATTGAAGAGGAGGTTGAAGTCAATTTGCTT 599
Query 638 AAGTTTTTGGAAGAGAATCGTAGGGTTAGTGTTCCAAGTGTGGAGAAACCTAAGCCTAAG 697
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 600 AAGTTTTTGGAAGAGAATCGTAGGGTTAGTGTTCCAAGTGTGGAGAAACCGAAGCCTAAG 659
Query 698 CCTAGGGTTTTGGGGTTCAAGGAAAGGTCTGAGCTTTCTAAGAATCCGACAGGGAAGAAG 757
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 660 CCTAGGGTTTTGGGGTTCAAGGAAAGGTCTGAGCTTTCCAAGAATCCTACGGGGAAGAAG 719
Query 758 CTGTTTGATATTATGTTGAAGAAGGAAACCAATCTTTGTTTAGCTGCTGATGTTGGAACT 817
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 720 CTGTTTGATATTATGTTGAAGAAGGAAACCAATCTTTGCTTAGCTGCTGATGTTGGAACT 779
Query 818 GCTGCTGAATTGCTTGACATCGCAGATAAGGTGGGACCAGAGATTTGTCTCTTGAAGACT 877
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 780 GCTGCTGAATTGCTTGACATCGCCGATAAGGTGGGACCAGAGATCTGTCTCTTGAAGACT 839
Query 878 CATGTTGATATACTGCCTGATTTCACCCCTGACTTTGGCTCTAAGCTCCGTGCGATTGCA 937
||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 840 CATGTTGATATTTTGCCTGATTTCACCCCTGACTTTGGCTCTAAACTCCGGGCGATCGCA 899
Query 938 GACAAGCACAAATTTCTCATATTTGAGGATCGCAAGTTTGCAGACATTGGTAACACTGTC 997
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 900 GACAAGCACAATTTTCTCATATTTGAAGATCGCAAGTTTGCAGACATTGGTAACACTGTC 959
Query 998 ACTATGCAGTATGAAGGAGGCATCTTTAAAATATTGGAGTGGGCTGATATTATCAACGCT 1057
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 960 ACTATGCAGTATGAAGGAGGCATCTTTAAAATATTGGAGTGGGCTGATATTGTAAACGCT 1019
Query 1058 CATGTAATATCGGGGCCAGGAATCGTGGATGGCCTGAAATTGAAGGGTATGCCTCGTGGT 1117
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CATATAATATCGGGGCCAGGAATCGTGGATGGCCTGAAATTGAAGGGTATGCCTCGTGGT 1079
Query 1118 AGAGGTTTGCTTTTGCTTGCTGAAATGAGCTCTGCAGGTAACCTGGCTACAGGAGACTAC 1177
|||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1080 AGAGGTCTGCTTTTGCTTGCTGAAATGAGCTCTGCGGGTAACCTTGCTACAGGAGACTAC 1139
Query 1178 ACTGCAGCAGCTGTGAAAATCGCAGACGCTCATTCTGATTTTGTGATGGGATTCATCTCG 1237
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 ACTGCAGCAGCCGTGAAAATCGCAGACGCTCATTCTGATTTTGTGATGGGATTCATCTCG 1199
Query 1238 GTGAATCCAGCATCTTGGAAATGCGGGTATGTGTATCCGTCTATGATTCATGCAACACCT 1297
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1200 GTGAATCCGGCATCTTGGAAATGCGGATATGTGTATCCGTCTATGATTCATGCAACACCT 1259
Query 1298 GGTGTTCAAATGGTGAAAGGTGGTGATGCACTTGGTCAGCAGTATAACACTCCACACTCT 1357
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1260 GGTGTTCAAATGGTGAAAGGTGGTGATGCACTTGGTCAACAGTATAACACTCCACACTCT 1319
Query 1358 GTGATTACTGAGAGGGGAAGTGATATTATAATCGTGGGACGGGGAATCATAAAGGCGGAA 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GTGATTACTGAGAGGGGAAGTGATATTATAATCGTGGGACGGGGAATCATAAAGGCGGAA 1379
Query 1418 AACCCAGCAGAGACGGCTCATGAGTATAGAGTTCAAGGATGGAATGCATACTTGGAGAAA 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AACCCAGCAGAGACGGCTCATGAGTATAGAGTTCAAGGATGGAATGCATACTTGGAGAAA 1439
Query 1478 TGCTCTCAGTAGATTCGATCCTGAGAGATGGCTG 1511
||||||||||||||||||||||||||||||||||
Sbjct 1440 TGCTCTCAGTAGATTCGATCCTGAGAGATGGCTG 1473
> Ahg937102 jgi|Araly1|937102|scaffold_501293.1
Length=246
Score = 97.1 bits (52), Expect = 4e-19
Identities = 54/55 (98%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 1303 TCAAATGGTGAAAGGTGGTGATGCACTTGGTCAGCAGTATAACACTCCACACTCT 1357
||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 17 TCAAATGGTGAAAGGTGGTGATGCACTTGGTCAACAGTATAACACTCCACACTCT 71
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62963174985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5