BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54480.1
Length=1114
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938368 jgi|Araly1|938368|scaffold_502559.1 1371 0.0
> Ahg938368 jgi|Araly1|938368|scaffold_502559.1
Length=865
Score = 1371 bits (742), Expect = 0.0
Identities = 828/869 (95%), Gaps = 7/869 (1%)
Strand=Plus/Plus
Query 72 TCATACTTCCTAAAGCGGCCATGG-AGTTACATGAGATCTCAAAGCTCGACAATAAGAAG 130
|||||||||||||||||||||||| | || || |||||||||||||||||||| ||||
Sbjct 1 TCATACTTCCTAAAGCGGCCATGGAAATT-CAAGAGATCTCAAAGCTCGACAACGAGAAA 59
Query 131 CATCCAGAGAGAATTGTTGAATCGAA-GATGAAGAAGAGAATGAAACCTTATTCTCTCAC 189
||||| ||||||||||| ||||| || |||||||||||||||||||||| ||||||||||
Sbjct 60 CATCCCGAGAGAATTGTCGAATC-AAGGATGAAGAAGAGAATGAAACCTCATTCTCTCAC 118
Query 190 GTCTCTTAACAATCTCGACGATGGTTGCCTTATGCATATCCTCAGCTTCCTATCTCCAAT 249
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 119 GTCTATTAACAATCTCGACGATGGTTGCCTCATGCATATCCTCAGCTTCCTATCTCCAAT 178
Query 250 TCCAGATAGGTATAACACAGCACTCGTTTGCCACAGATGGAGATATCTGGCGTGTCACCC 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TCCAGATAGGTATAACACAGCACTCGTTTGCCACAGATGGAGATATCTGGCGTGTCACCC 238
Query 310 TCGCTTGTGGCTCCGTGTTGACCGTTTTGTCAAGGATTTATCTCAGCCTGGAGTTTTCCT 369
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 239 TCGCTTGTGGCTCCGTGTTGACCGTTTTGTTAAGGATTTATCTCAGCCTGGAGTTTTCCA 298
Query 370 CAACATTGAGTCAGCTGTATCTGCAGCAAGACCCGGCGATACCATTTTAATAGTAGCCGG 429
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 299 CAACATTGAGTCAGCTGTATCTGCAGCAAGACCCGGCGATACCATTTTAATAGGAGCCGG 358
Query 430 TGGGAA-CTATCGCGTTTCTAATATTCAGATTAAAAAGCCTCTTTGCCTGGTCGGTGGAG 488
||| || | |||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 359 TGGCAATC-ATCGTGTTTCTAATATTCAGATTAAAAAGCCTCTTTGCCTGGTCGGCGGGG 417
Query 489 GCGAGATTCCTGATGAAACCACCCTCGTCTGTGCTCGTGGTTCAGACAGTGCCCTGGAAC 548
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GCGAGATTCCTGATGAAACCACCCTCGTCTGTGCTCGTGGTTCAGACAGTGCCCTGGAAT 477
Query 549 TGTTATCAACCTGCAAGCTTGCGAATTTAACAGTAAAAGCAGAGCTCGGGTGCTGTTTGC 608
|| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 478 TGCTATCGACCTGCAAGCTTGCGAATTTAACAGTCAAAGCAGAGCTCGGGTGCTGTTTGC 537
Query 609 TTCATAGGAGTGGAAGGCTAACGATTGATGGATGTGTGCTTCAATGTGAGACAAACCCTT 668
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTCATAGGAGTGGAAGGGTAACGATTGATGGATGTGTGCTTCAATGTGAGACAAACCCTT 597
Query 669 TGGATCATCTCTCATGCCCAATCGTGAGCACTGCTGGAGATGAAGACATTGAAAATATCT 728
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 598 TGGATCATCTCTCATGCCCAATCGTGAGCACTGCTGGAGATGAAGACATTGAAGATATCT 657
Query 729 TAAGCCATGTGGAAGTGAAAGAAACTGTTACTGGAAAGATTAAAGCAAACAGTGTAACCG 788
| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
Sbjct 658 TGAGCCATGTGGAAGTGAAAGAAACTGTTGCTGAAAAGATTAAAGCAAACAGTGTAACAG 717
Query 789 TTTTGCAGACAAGAATCGAGGGAGGTGCAAAGGCTGTTTCAACAAGGGGAGACTTGGTTC 848
||||||||||||| |||||||||||||||||||||||||| || || |||||||||||||
Sbjct 718 TTTTGCAGACAAGGATCGAGGGAGGTGCAAAGGCTGTTTCGACTAGTGGAGACTTGGTTC 777
Query 849 TGCAGCGTGTTCGAGTCATGTATTCCAAGGCTTACCTCTATTTCTGGTTTGATGTAGATT 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TGCAGCGTGTTCGAGTCATGTATTCCAAGGCTTACCTCTATTTCTGGTTTGATGTAGATT 837
Query 909 ATGAATGATTTTTGCTGGTTTTATTTATT 937
|| |||||| ||||||| |||| ||||||
Sbjct 838 ATCAATGATCTTTGCTGATTTT-TTTATT 865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41515856613
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5