BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G54480.1 Length=1114 Score E Sequences producing significant alignments: (Bits) Value Ahg938368 jgi|Araly1|938368|scaffold_502559.1 1371 0.0 > Ahg938368 jgi|Araly1|938368|scaffold_502559.1 Length=865 Score = 1371 bits (742), Expect = 0.0 Identities = 828/869 (95%), Gaps = 7/869 (1%) Strand=Plus/Plus Query 72 TCATACTTCCTAAAGCGGCCATGG-AGTTACATGAGATCTCAAAGCTCGACAATAAGAAG 130 |||||||||||||||||||||||| | || || |||||||||||||||||||| |||| Sbjct 1 TCATACTTCCTAAAGCGGCCATGGAAATT-CAAGAGATCTCAAAGCTCGACAACGAGAAA 59 Query 131 CATCCAGAGAGAATTGTTGAATCGAA-GATGAAGAAGAGAATGAAACCTTATTCTCTCAC 189 ||||| ||||||||||| ||||| || |||||||||||||||||||||| |||||||||| Sbjct 60 CATCCCGAGAGAATTGTCGAATC-AAGGATGAAGAAGAGAATGAAACCTCATTCTCTCAC 118 Query 190 GTCTCTTAACAATCTCGACGATGGTTGCCTTATGCATATCCTCAGCTTCCTATCTCCAAT 249 |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 119 GTCTATTAACAATCTCGACGATGGTTGCCTCATGCATATCCTCAGCTTCCTATCTCCAAT 178 Query 250 TCCAGATAGGTATAACACAGCACTCGTTTGCCACAGATGGAGATATCTGGCGTGTCACCC 309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 TCCAGATAGGTATAACACAGCACTCGTTTGCCACAGATGGAGATATCTGGCGTGTCACCC 238 Query 310 TCGCTTGTGGCTCCGTGTTGACCGTTTTGTCAAGGATTTATCTCAGCCTGGAGTTTTCCT 369 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 239 TCGCTTGTGGCTCCGTGTTGACCGTTTTGTTAAGGATTTATCTCAGCCTGGAGTTTTCCA 298 Query 370 CAACATTGAGTCAGCTGTATCTGCAGCAAGACCCGGCGATACCATTTTAATAGTAGCCGG 429 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 299 CAACATTGAGTCAGCTGTATCTGCAGCAAGACCCGGCGATACCATTTTAATAGGAGCCGG 358 Query 430 TGGGAA-CTATCGCGTTTCTAATATTCAGATTAAAAAGCCTCTTTGCCTGGTCGGTGGAG 488 ||| || | |||| ||||||||||||||||||||||||||||||||||||||||| || | Sbjct 359 TGGCAATC-ATCGTGTTTCTAATATTCAGATTAAAAAGCCTCTTTGCCTGGTCGGCGGGG 417 Query 489 GCGAGATTCCTGATGAAACCACCCTCGTCTGTGCTCGTGGTTCAGACAGTGCCCTGGAAC 548 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 GCGAGATTCCTGATGAAACCACCCTCGTCTGTGCTCGTGGTTCAGACAGTGCCCTGGAAT 477 Query 549 TGTTATCAACCTGCAAGCTTGCGAATTTAACAGTAAAAGCAGAGCTCGGGTGCTGTTTGC 608 || |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 478 TGCTATCGACCTGCAAGCTTGCGAATTTAACAGTCAAAGCAGAGCTCGGGTGCTGTTTGC 537 Query 609 TTCATAGGAGTGGAAGGCTAACGATTGATGGATGTGTGCTTCAATGTGAGACAAACCCTT 668 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 538 TTCATAGGAGTGGAAGGGTAACGATTGATGGATGTGTGCTTCAATGTGAGACAAACCCTT 597 Query 669 TGGATCATCTCTCATGCCCAATCGTGAGCACTGCTGGAGATGAAGACATTGAAAATATCT 728 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 598 TGGATCATCTCTCATGCCCAATCGTGAGCACTGCTGGAGATGAAGACATTGAAGATATCT 657 Query 729 TAAGCCATGTGGAAGTGAAAGAAACTGTTACTGGAAAGATTAAAGCAAACAGTGTAACCG 788 | ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | Sbjct 658 TGAGCCATGTGGAAGTGAAAGAAACTGTTGCTGAAAAGATTAAAGCAAACAGTGTAACAG 717 Query 789 TTTTGCAGACAAGAATCGAGGGAGGTGCAAAGGCTGTTTCAACAAGGGGAGACTTGGTTC 848 ||||||||||||| |||||||||||||||||||||||||| || || ||||||||||||| Sbjct 718 TTTTGCAGACAAGGATCGAGGGAGGTGCAAAGGCTGTTTCGACTAGTGGAGACTTGGTTC 777 Query 849 TGCAGCGTGTTCGAGTCATGTATTCCAAGGCTTACCTCTATTTCTGGTTTGATGTAGATT 908 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 TGCAGCGTGTTCGAGTCATGTATTCCAAGGCTTACCTCTATTTCTGGTTTGATGTAGATT 837 Query 909 ATGAATGATTTTTGCTGGTTTTATTTATT 937 || |||||| ||||||| |||| |||||| Sbjct 838 ATCAATGATCTTTGCTGATTTT-TTTATT 865 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41515856613 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5