BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54490.1
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938369 jgi|Araly1|938369|scaffold_502560.1 1031 0.0
Ahg485852 jgi|Araly1|485852|fgenesh2_kg.5__1844__AT3G54500.1 91.6 9e-18
> Ahg938369 jgi|Araly1|938369|scaffold_502560.1
Length=717
Score = 1031 bits (558), Expect = 0.0
Identities = 670/721 (93%), Gaps = 20/721 (3%)
Strand=Plus/Plus
Query 57 GGAGGAGACAATGGCCGAAGAAGGGTGCTGTGAAAATGTTGAGTCGACGTTTGACGACGG 116
||||| || ||||||||||||||||||||||||||||| ||||||||||||| | | ||
Sbjct 16 GGAGGTGAAAATGGCCGAAGAAGGGTGCTGTGAAAATGGTGAGTCGACGTTTAAAAATGG 75
Query 117 TA-CCAACTGTATTTCGAAGACTGAGGACACCGGAGGAATCGAAAGCAAGAGGTTTTACT 175
|| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 76 TAGCC-ACTGTATTTCGAAGACTGAGGACACCGGAGGAATCGACAGCAAGAGGTTTTACT 134
Query 176 TGGCTCGCACGACAGCTTTTGAGATGCTTCGCGATAGAGGCTACGAAGTTAATGAAGCTG 235
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 135 TGGCTCGCACGACAGCTTTTGAGATGCTTCGCGACAGAGGCTACGAAGTTAATGAAGCTG 194
Query 236 AGCTCTCTCTCACTCTTTCTGAGTTTCGTTCTGTTTTTGGTGAGAAGCCTGAGCTTGAAC 295
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 195 AGCTCTCTCTCACTCTTTCTGATTTTCGTTCTGTTTTTGGTGAGAAGCCTGACCTTGAAC 254
Query 296 GCCTCCGTATCTGCGTTCCTCTTCGCTCAGATCCCAAGAAAAAGATCCTTGTTGTGTTCA 355
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 255 GCCTCCGTATCTGCGTTCCTCTCCGCTCAGATCCCAAGAAAAAGATCCTTGTTGTGTTCA 314
Query 356 TGGGAACTGAACCAATCACCGTGAAGTCAGTTCGTGCTCTTCATATTCAGATTTCCAACA 415
||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||
Sbjct 315 TGGGAACTGAACCAATCACCGTGAAATCAGTTCGTGCTATTCATAGTCAGATTTCCAACA 374
Query 416 ATGTAGGCTTGCATGCTATGATTCTGGTTTTACAGAGCAAAATGAACCACTTTGCCCAGA 475
|||||||| || |||||||||||||| | ||||||||||||||||||||||||||||| |
Sbjct 375 ATGTAGGCGTGAATGCTATGATTCTGATATTACAGAGCAAAATGAACCACTTTGCCCACA 434
Query 476 AGGCATTGACTACCTTCCCTTTTACAGTTGAAACTTTCCCGATTGAAGATTTGTTGGTCA 535
||| |||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 435 AGGAATTGACAACCTTCCCTTTTACAGTTGAAACTATCCCGATTGGAGATTTGTTGGTCA 494
Query 536 ACATCACAAAGCACATTCAGCAGCCAAAGATTGAGATTTTAAACAAAGAGGAGAAAGAAC 595
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 ACATCACAAAGCATATTCAGCAGCCAAAGATTGAGATTTTAAACAAAGAGGAGAAAGAAC 554
Query 596 AACTGCTGAGGAAGCATGCACTTGAGGACAAACAGCTTCCTTATTTGCAGGAGAAGGACA 655
|| |||||||||||||||| ||||||||||||||| | |||| ||
Sbjct 555 AATTGCTGAGGAAGCATGCCCTTGAGGACAAACAG-----------G-AGGA------CA 596
Query 656 GCTTTGTGAGGTACTATGGGTTAAAGAAAAAACAGGTGGTGAAGATTACATACAGTAAAG 715
|||| || || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GCTTCGTCAGATACTATGGGTTAAAGAAAAAACAGGTGGTGAAGATTACATACAGTAAAG 656
Query 716 AGCCTGTTGGGGATTTTGTGACATACCGATGCATCATCTGAACTCTGAAGAAAGGCAAAT 775
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AGCCTATTGGGGATTTTGTGACATACCGATGCATCATCTGAACTCTGAAGAAAGGCAAAT 716
Query 776 T 776
|
Sbjct 717 T 717
> Ahg485852 jgi|Araly1|485852|fgenesh2_kg.5__1844__AT3G54500.1
Length=2291
Score = 91.6 bits (49), Expect = 9e-18
Identities = 58/62 (94%), Gaps = 1/62 (2%)
Strand=Plus/Minus
Query 861 GTGCTTACAATTGTATTAAGAGATTGAATCTGGTTTCGAATGGGGGAAAAA-CATTGCAA 919
|||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||
Sbjct 2291 GTGCTTACAATTGTATTAAGAGATTGAATCTGGTTTTGAATGAGGAAAAAAACATTGCAA 2232
Query 920 AC 921
||
Sbjct 2231 AC 2230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34158133632
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5