BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G54510.2 Length=2475 Score E Sequences producing significant alignments: (Bits) Value Ahg485854 jgi|Araly1|485854|fgenesh2_kg.5__1846__AT3G54510.2 3565 0.0 > Ahg485854 jgi|Araly1|485854|fgenesh2_kg.5__1846__AT3G54510.2 Length=2284 Score = 3565 bits (1930), Expect = 0.0 Identities = 2105/2192 (96%), Gaps = 2/2192 (0%) Strand=Plus/Plus Query 1 ATGACATCATGTGACTCTGTTTC-CCATAGTCAGAGAAAAGAAAAAATATGACGCCAGAA 59 |||||||||||| |||||||||| || ||||||||| |||||||||| |||||||| ||| Sbjct 1 ATGACATCATGTAACTCTGTTTCACC-TAGTCAGAGGAAAGAAAAAAGATGACGCCGGAA 59 Query 60 AGCTTGTTAGCGTCGGCGTCGATCAACATAGGACTCGCCGTCGTTGCACTCTGGCTCTTC 119 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 60 AGCTTGTTAGCGTCGGCGTCGATCAACATAGGTCTCGCCGTCGTTGCACTCTGGCTCTTC 119 Query 120 TCCGTCCTCAAGAAGCAGCCCCGTAACGCCGTCGTATACTATGCTCGCCGCCTCTCCGAT 179 || || || |||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 120 TCTGTGCTTAAGAAGCAGCCCCGTAACGCCGTCGTCTACTACGCTCGCCGCCTCTCCGAT 179 Query 180 CGCCACCACCACCGTCCTCTGTCTCTACACTCATCCCTTTGCCTCCCTCGTTTCCTTCCT 239 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| Sbjct 180 CGCCACCACCACCGTCCTCTGTCTCTACACTCTTCCCTTTGCCTCCCTCGATTCCTCCCT 239 Query 240 TCCGTTGCGTGGATCCCACGCGCCTTCCGTGTCCCCGAGGACGAGATCCTCAGCCGCCAC 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TCCGTTGCGTGGATCCCACGCGCCTTCCGTGTCCCCGAGGACGAGATCCTCAGCCGCCAC 299 Query 300 GGCCTTGATGCTCTCGTCCTCATCAGGCTCTTCAAATTCGGAATTAGATTCTTCCTGATG 359 ||||||||||| |||||||||||||||||||||||||||||||||||||||||| || || Sbjct 300 GGCCTTGATGCCCTCGTCCTCATCAGGCTCTTCAAATTCGGAATTAGATTCTTCTTGTTG 359 Query 360 TGTTCGTTACTTGGAGCATCACTACTTCTTCCGGTTGATTATTACAATGAGTCAGATTTA 419 || |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| Sbjct 360 TGCTCGTTACTTGGAGCTTCACTGCTTCTTCCGGTTGATTACTACAATGAGTCAGATTTA 419 Query 420 CCGACACGAAGAGAGTATTCAATGGATGCTTTCACAATATCAAATATCACACGAGGTTCT 479 || ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 420 CCAACACGAAAAGAGTATTCAATGGATGCGTTCACAATATCAAATATCACACGAGGTTCT 479 Query 480 AACAAGTTATGGGTGCATTTCTCATGCTTGTGGTGCATATCATTCTATGCATTGTTTTTG 539 |||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 480 AACAAGTTGTGGGTGCATTTCTCATGCTTGTGGTTCATTTCATTCTATGCATTGTTTTTG 539 Query 540 TTGCATAAGGAATATAAGGAGATTCTTGTGATAAGGCTTCAACAAATGAAAGAACTTAGA 599 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 540 TTGCATAAGGAATATAAGGAGATTCTTGTGATAAGGCTTCAGCAAATGAAAGAACTTAGA 599 Query 600 CATCGTGCTGATCAGTTCACTGTTCTTGTCCGCCAAGTTCCTCTCTGCCCTGAGCATAAC 659 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 600 CATCGTGCTGACCAGTTCACTGTTCTAGTCCGCCAAGTTCCTCTCTGCCCTGAGCATAAC 659 Query 660 ACTCGTGGCTGCGCCGTTGATCACTTTTTCTCTAAGCATCATCGCTTTAGTTATCATTCA 719 |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 660 ACTCGTGGCTGCACCGTTGATCACTTCTTCTCTAAGCATCATCGCTTTAGTTATCATTCA 719 Query 720 CATCAGATGTTGTATGACGGGAGAGATCTTGAATACCTTTTGGGGAAGCAGAAGAAGCTT 779 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 720 CATCAGATGTTGTATGACGGGAGAGATCTTGAATACCTTTTGGGAAAACAGAAGAAGCTT 779 Query 780 AAGAAAGAGCTAGAAGACAAGAGACACACAGAAATACTTTCAAATGGATCACAAGAACAC 839 || |||||| ||||| |||||||||||| ||| |||||||| ||||||||||||||||| Sbjct 780 AAAAAAGAGATAGAATACAAGAGACACATAGACATACTTTCGAATGGATCACAAGAACAT 839 Query 840 AAGCAAATATCCACATCTGAAGAAAAACTTCGAGAAATTACTCATATGATTTACCACCTT 899 ||||| ||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| Sbjct 840 AAGCACATATCCACATCTGAAGAAAAACTTCAAGAAATTACCCATATGGTTTACCACCTT 899 Query 900 CAAAGTGAAACTATGCTCAGAGAGAAGGAGTTACCTGTTGCGTTTGTCACCTTCAAATCC 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 CAAAGTGAAACTATGCTCAGAGAGAAGGAGTTACCTGTTGCGTTTGTCACCTTCAAATCC 959 Query 960 CGAAGAAATGCCGCGTTGGCAGCTCAAACACAGCAGCACTCAAATCCTCTAGAACTGATA 1019 ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 960 CGAAGAAATGCCGCGCTGGCAGCTCAAACACAGCAGCATTCAAATCCTCTAGAACTGATA 1019 Query 1020 ACTGAAATGGCTCCTGAACCAAGAGATGTATCCTGGAGAAATCTTGCTATTCCACAAAAG 1079 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 ACCGAAATGGCTCCTGAACCAAGAGATGTATCCTGGAGAAATCTTGCTATTCCACAAAAG 1079 Query 1080 ATTTTGCCTCTCAACAAGATCGGAGTCATCCTTGCAGCAGCACTTCTTACAATCTTCTTT 1139 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1080 ATTTTGCCTCTGAACAAGATCGGAGTAATCCTTGCAGCAGCACTTCTTACAATCTTCTTT 1139 Query 1140 GCTATTCCGGTCACAGCTGTCCAGGGAATTGCAAAGTATGAGAAGCTTAAGAAATGGTTT 1199 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 1140 GCTATTCCGGTCACAGCTGTGCAGGGAATTGCAAAGTATGAGAAGCTCAAGAAATGGTTT 1199 Query 1200 CCTCCAGCCATGGCTATTGAATTCATACCAGGGCTTAGCTCAGTTGTGACAGGTTACCTC 1259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 CCTCCAGCCATGGCTATTGAATTCATACCAGGGCTTAGCTCAGTTGTGACAGGTTACCTC 1259 Query 1260 CCAAGTGCTATACTCAAAGGTTTCATGTACATTATTCCTTTCGCTATGCTTGGACTGGCC 1319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1260 CCAAGTGCTATACTCAAAGGTTTCATGTACATTATTCCTTTCGCTATGCTTGGACTTGCC 1319 Query 1320 TATCTCGGCGGCTCTATTTCCAACAGTAAAGAGGAGATAAAAGCTTGCAACATGGTCTTC 1379 ||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||| Sbjct 1320 TATCTCGGCGGATCTATCTCCAAGAGTAATGAGGAGATAAAAGCTTGCAACATGGTCTTC 1379 Query 1380 TATTTTCTAATGGGAAATGTTTTCTTCTTGAGTCTTATCTCTGGTTCCTTGCTTGATGAA 1439 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1380 TATTTTCTAATGGGAAATGTTTTCTTCTTGAGTCTTATCTCTGGTTCCTTGCTAGATGAA 1439 Query 1440 ATAGGAGAATATCTCACTCATCCTAGAGACATTCCTAGTCACCTTGCTGCTGCTGTTTCA 1499 || || |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1440 ATTGGCGAATATCTCACTCATCCTAGAGACATTCCTAGTCACCTTGCTGCCGCTGTTTCA 1499 Query 1500 GCCCAGGCAGAGTTTTTTATGACATACATCTTGACAGATGGGCTGTCTGGATTTTCTTTG 1559 |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| Sbjct 1500 GCCCAGGCAGAGTTTTTTATGACATACATCTTGACAGATGGGTTGTCTGGGTTTTCTTTG 1559 Query 1560 GAGATTCTTCAATTGGGACTTATACTATTTGATATCATAAGATCATACACTTATGGAAGA 1619 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1560 GAGATTCTCCAATTGGGACTTATACTATTTGATATCATAAGATCCTACACTTATGGAAGA 1619 Query 1620 GGAAAAGAGAGAACTCCTTACCTCTTTTCATTTCCATATTTTAGAGTTATCCCCACAGTT 1679 ||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 1620 GGAAAAGAGAGAACTACTTACCTCTTTTCATTTCCATATTTCAGAGTAATCCCCACAGTT 1679 Query 1680 TCCTTATCGATAATGATCGGTATGATTTATGCGGTGGTTGCGCCATTGATGCTCCCTTTC 1739 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 1680 TCCTTATCGATAATGATCGGTATGATTTATGCTGTGGTCGCGCCATTGATGCTCCCTTTC 1739 Query 1740 CTAGTTGGTTATTTCTGCCTTGGATACATTGTCTACTTCAATCAGATGGAGGATGTTTAC 1799 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1740 CTAGTTGGTTATTTCTGCCTTGGATACATTGTCTACTTCAATCAGATGGAGGATGTATAC 1799 Query 1800 GAGACTACATATGATACTTGCGGTCGATTCTGGCCATTCATTCATCATTATATATTTGTC 1859 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1800 GAGACTACATATGATACTTGCGGTCGATTCTGGCCATTCATTCATCATTATATCTTTGTC 1859 Query 1860 TCAATAATACTAATGCAAATCACAATGGTGGGTCTTTTTGGACTTAAATCAAAGCCATCT 1919 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1860 TCAATAATACTAATGCAAATCACAATGGTGGGTCTTTTTGGACTTAAGTCAAAGCCATCT 1919 Query 1920 GCAGCAATTGCTACAGTACCTCTCATATTGATCACTATAGCTTATAACGAATACTGCAAG 1979 ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||| Sbjct 1920 GCAGCAATTGCTACAGTGCCTCTAATATTGATCACTATAGCTTATAACGAGTACTGCAAG 1979 Query 1980 ATCCGCTTCCTCCCATCATTTAAACATTTCCCTATACAGACAGCAGTTGAAATAGACGAA 2039 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1980 ATCCGCTTCCTCCCATCATTTAAACATTTCCCTATACAGACAGCAGTTGAAATAGACGAA 2039 Query 2040 GAAGATGAAAAGAATGGGGAGATGGAAACACATTATGTTGATGCTGCAACGGCGTATAAC 2099 |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 2040 GAAGATGAAAAGAATGGGGAGATGGAAACACATTGTGTTGATGCTGCAACGGCATATAAC 2099 Query 2100 CGGCATCAACCTTGCTTAGAGCGTGTAAGCTCAGCGGAATCACCAACAAACTTAAGCCAA 2159 |||||||||||||| |||||||||||||||||||||||| ||||||||||| | |||||| Sbjct 2100 CGGCATCAACCTTGTTTAGAGCGTGTAAGCTCAGCGGAAGCACCAACAAACCTGAGCCAA 2159 Query 2160 CCATTGCTTGGGACAGACTCCATTTGAGTCTA 2191 ||||||||||| || |||||||| |||| ||| Sbjct 2160 CCATTGCTTGGAACGGACTCCATATGAGGCTA 2191 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93283010005 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5