BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54520.1
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323986 jgi|Araly1|323986|fgenesh1_pm.C_scaffold_5001530 1277 0.0
> Ahg323986 jgi|Araly1|323986|fgenesh1_pm.C_scaffold_5001530
Length=885
Score = 1277 bits (691), Expect = 0.0
Identities = 822/884 (93%), Gaps = 14/884 (2%)
Strand=Plus/Plus
Query 28 ATGGAAGCTTCCACTCAGCTCAACGGTGTCAACGAAATATCCAAGTCTATTGGTATTGTA 87
||||||||||| ||||||||||||| ||||||| |||||||||| |||||||||||||||
Sbjct 1 ATGGAAGCTTCTACTCAGCTCAACGATGTCAACAAAATATCCAACTCTATTGGTATTGTA 60
Query 88 GGCAACTATGATGAAATGGGTTTAGGGAAACTTTACCGCGACAAGTTGTCACCTGATGCT 147
||||||||| |||||| |||||||||||||||||||||||||||| |||||||||| |||
Sbjct 61 GGCAACTATAATGAAAAGGGTTTAGGGAAACTTTACCGCGACAAGATGTCACCTGACGCT 120
Query 148 GATCCAGTTGTGCACATGTCAGTTTCCAAAGCAGAGAAGCGACTGAAAAAGCTCGAGAGG 207
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GATCCAGTTGTGCACATGTCAGTTTCCAAAGCAGAGAAGCGACTCAAAAAGCTCGAGAGG 180
Query 208 GATTATCAACATACCTACGAGAATTACAAT-GAAATCCGATCAAACAGGTATAGGTTCTA 266
||||||||||| ||||||||||| ||| || |||| ||||||||||||||||||||||||
Sbjct 181 GATTATCAACACACCTACGAGAACTAC-ATAGAAACCCGATCAAACAGGTATAGGTTCTA 239
Query 267 CATTGAAGCAAAGCATTCTACGTATCGCAGTCGACAGGCTGGAAACTGTATCAAATATTA 326
|||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 240 CATTGAAGCAAAACATTCTACGTATCGCAGTCAACAGGTTGGAAACTGTATCAAATATTA 299
Query 327 CAACAATCTGCGAGAGCAACTGCAGAATAATCTTGACAAATTGAAAAAAGCAGAAGAAAC 386
||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct 300 CAAGAATCTGCGAGAGCAACTGCAGAATAATCTTGACAAATTGAATAAAGTAGAAGCAAC 359
Query 387 ACAGAGAGG-AGTAGAAAAGCCTGATCACTGCAAGCGAGTGTCGATGCA-GCACGGTTGT 444
||||||||| || ||||| |||||||||||| |||| ||| |||||| | | |||||||
Sbjct 360 ACAGAGAGGAAG-AGAAAGGCCTGATCACTGGAAGCAAGTCTCGATG-ATCCGCGGTTGT 417
Query 445 AAAAGCTTGACCCAAGAAAAGAGGATACTTCAACTGATAGGAGAAAGACAACAACAACAC 504
||||||||| ||||||||||||||||||| |||| |||||||||||| ||||||||||
Sbjct 418 AAAAGCTTGGCCCAAGAAAAGAGGATACTACAACAGATAGGAGAAAG---ACAACAACAC 474
Query 505 CTGGAAAACAATGACCTTGGTCAAGAAACAATTCATTTCACGAAAATAAGCTGGGAGTTC 564
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 475 CTGGAAAACAATGACCTTGGTCAAGAAACAATTCATTTCACAAAAATAAGCTGGGAGTTC 534
Query 565 GACTACAGTCAAAGTAAAATTCCAAAAAGTAGCAACAGCAAAACAGTACATAATCTGCTG 624
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 535 GACTACAGTCAAAGTAAAATTCCAAAAAGTAGCAACAGCAAAGCAGTACATAATCTGCTG 594
Query 625 AGGAGATTTAAAGACACGGAGAAGTTGAAGGATAAAGCCGTTGCCAATGGTGAACTTGTT 684
|||| |||||||||||| |||||||||||||||||||| ||||||||||||| ||||||
Sbjct 595 AGGAAATTTAAAGACACAGAGAAGTTGAAGGATAAAGCTATTGCCAATGGTGATCTTGTT 654
Query 685 AACAACCCAACTAGTCAGGACAACTTGACAATTTCTATAGAGATGGAAATAAAACTTCTG 744
||||||||||| |||||||||| |||||||||||||||||||||||| ||||||| |||
Sbjct 655 AACAACCCAACAAGTCAGGACATTTTGACAATTTCTATAGAGATGGAACTAAAACTCCTG 714
Query 745 ACAAAGGTAATCAAAAAGCTTGAAAGAGAAAGAGGGATAGAGACAA---GGACTGATTAT 801
|||||||||||||||| |||||||| ||||||||| |||||||||| |||||||| |
Sbjct 715 ACAAAGGTAATCAAAACGCTTGAAAAAGAAAGAGGAATAGAGACAACAAGGACTGATAAC 774
Query 802 GGTCACGAGGAAAAGATCAAGCATCTAGAGAAAAAATGTGAAATG-ATATGCGGAAAATG 860
||||||||||||||||| | |||||||||||||||||||||| || |||||||| |||||
Sbjct 775 GGTCACGAGGAAAAGATGAGGCATCTAGAGAAAAAATGTGAA-TGGATATGCGGGAAATG 833
Query 861 GGATGAAGAAAAGAAGTATATTGTAGGGTTGAAGAACATACATG 904
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GGATGAAGAAAAGAAGTATATTGTAGGGTTGAAGAACATACATG 877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41477733696
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5