BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54530.1
Length=1075
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898391 jgi|Araly1|898391|Al_scaffold_0005_2357 1221 0.0
> Ahg898391 jgi|Araly1|898391|Al_scaffold_0005_2357
Length=936
Score = 1221 bits (661), Expect = 0.0
Identities = 864/958 (90%), Gaps = 29/958 (3%)
Strand=Plus/Plus
Query 90 AAGCCGATGGTCAGGAAACTTCTAATTTCAAAACAATATCCATCTCAGTTGGTATGGGAT 149
|||||||||||||||||||||||| || |||||||||||||||| | |||||||| ||||
Sbjct 5 AAGCCGATGGTCAGGAAACTTCTACTTCCAAAACAATATCCATCCCTGTTGGTATAGGAT 64
Query 150 GCAACTATAGTAAAAAGGGCTCCGAGAAACTTTCCTGCAACATGGTTTCACCATGCCCTG 209
||||||||||||||| | | ||||||||||||||||||||| | || || ||||||| ||
Sbjct 65 GCAACTATAGTAAAACGAGTTCCGAGAAACTTTCCTGCAACGTAGTGTCGCCATGCCTTG 124
Query 210 GCTCATTTGGGCGTTCATCATTTGCAGAAGCAAAGAAGCGATTGGAAAAGCTCGAGCAAG 269
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 125 GCCCATTTGGGCGTTCATCATTTGCAGAAGCAAAGAAGCGATTGGAAAAGCTCGAGCGAG 184
Query 270 ATTATCAACACACCTACGAGAAGTACACAGAACTACAATCAGACAGGTATATGTACTACA 329
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 185 ATTATCAACACACCTACAAGAAGTACACAGAACTACAATCAGACAGGTATAGGTACTACA 244
Query 330 TTGCTTTT-CAACGTCCAGGACATCACAGTCGCTGGGTTGGCTACTGTATCGATCACATC 388
||| |||| |||| |||||||||||||||||||||||||||||||||||||| || || |
Sbjct 245 TTG-TTTTACAACATCCAGGACATCACAGTCGCTGGGTTGGCTACTGTATCGTTCGCAGC 303
Query 389 GAAAATGTAGTAGAGCAACTGCAGAATGTTCTTGACAAGCTGAATACAGAAGAAGCATCA 448
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 AAAAATGTAGTGGAGCAACTGCAGAATGTTCTTGACAAGCTGAATACAGAAGAAGCATCA 363
Query 449 CAAAGAGGAAGAGAAACACCAACAAACGGTAAGCAATTCTTCTTGACGCACGGTTGTAAA 508
|||||||||||||||||||| ||||| || |||||||||||||||| ||||||| |||||
Sbjct 364 CAAAGAGGAAGAGAAACACCTACAAATGGCAAGCAATTCTTCTTGATGCACGGTCGTAAA 423
Query 509 AGCTTGGCACAAGAAAATATGGTACTTCAGAAGCTGAAAGCAGAAACCAAAGAGCAATAC 568
||||||||||||||||| |||||||| ||| ||||||||||||||| |||||||||||||
Sbjct 424 AGCTTGGCACAAGAAAAGATGGTACTGCAGCAGCTGAAAGCAGAAAACAAAGAGCAATAC 483
Query 569 ACTGATGGTCTGTGTCAAGAAACAATTGATGTCAAAAGAATTAATTG-GGAGTTCATTTG 627
|||||||| ||||| |||||||||||||| ||||||||||||||| | |||||||| ||
Sbjct 484 ACTGATGGCCTGTGCCAAGAAACAATTGACGTCAAAAGAATTAAT-GAGGAGTTCAGGTG 542
Query 628 CATTCAAAGAATAGTTCCACAGAATAGCAACAAGAAATCTGTACACGATCTGTTGAGGAG 687
|||||||||||||||||||| || |||||||||||||||| |||| ||||||||||||||
Sbjct 543 CATTCAAAGAATAGTTCCACGGACTAGCAACAAGAAATCTATACATGATCTGTTGAGGAG 602
Query 688 AGTTAATGAGACACAGAAGTTGACAGAAAAAGCTATTTCCAATGGTGCACTAATGGGCAA 747
|||||| |||| | ||||| ||||| |||| |||||||||||||||||||||||||||||
Sbjct 603 AGTTAAAGAGATAAAGAAGCTGACACAAAAGGCTATTTCCAATGGTGCACTAATGGGCAA 662
Query 748 CCTCACGAGTCTGGACAATATGAAAAATTCTACAAGTGACTTAATAAAGATTGTGACGAA 807
|| ||||||||||||||||||||||||||||||||||| |||||||||| || ||| |||
Sbjct 663 CCACACGAGTCTGGACAATATGAAAAATTCTACAAGTGTCTTAATAAAG-TT-TGA-GAA 719
Query 808 TGTACACAGAGAGTTAGAGAAAGAGAAAATAGAGTTAGAGAATATTTTGCAAGACAGAAT 867
| | || | | | || ||| | | |||||||||||||||||||||| |
Sbjct 720 AG-A----GA-A-T-A-AG---GAG----T----T-AGAGAATATTTTGCAAGACAGAGT 758
Query 868 ACATTTTGCAAgaaaaaatgaaaaaggatacatagaaaaaataagggttttacgggaaaa 927
|||||||||||||||||||||||||||||||| |||||||| |||||| || |||||||
Sbjct 759 ACATTTTGCAAGAAAAAATGAAAAAGGATACACCGAAAAAATGAGGGTTCTATGGGAAAA 818
Query 928 atgtaaatGCATAGTTGAGAGACGTGATGCAGAAAAGAAATACTTGCTCGATTTGGAGAA 987
|||||||||||||| ||||| |||||||||||||||||||| |||||||||||| ||||
Sbjct 819 ATGTAAATGCATAGGTGAGAAACGTGATGCAGAAAAGAAATTTTTGCTCGATTTGAAGAA 878
Query 988 AAATTTCAGGGATATGAACAAAACTGCTTCACAGAGAAAAGGCTGCCGAAAAGG-TAA 1044
|| ||||||||| ||| |||||||||||||||| |||||||||||||||||||| |||
Sbjct 879 AAGTTTCAGGGAGATGCACAAAACTGCTTCACAAAGAAAAGGCTGCCGAAAAGGGTAA 936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40029062850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5