BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G54530.1 Length=1075 Score E Sequences producing significant alignments: (Bits) Value Ahg898391 jgi|Araly1|898391|Al_scaffold_0005_2357 1221 0.0 > Ahg898391 jgi|Araly1|898391|Al_scaffold_0005_2357 Length=936 Score = 1221 bits (661), Expect = 0.0 Identities = 864/958 (90%), Gaps = 29/958 (3%) Strand=Plus/Plus Query 90 AAGCCGATGGTCAGGAAACTTCTAATTTCAAAACAATATCCATCTCAGTTGGTATGGGAT 149 |||||||||||||||||||||||| || |||||||||||||||| | |||||||| |||| Sbjct 5 AAGCCGATGGTCAGGAAACTTCTACTTCCAAAACAATATCCATCCCTGTTGGTATAGGAT 64 Query 150 GCAACTATAGTAAAAAGGGCTCCGAGAAACTTTCCTGCAACATGGTTTCACCATGCCCTG 209 ||||||||||||||| | | ||||||||||||||||||||| | || || ||||||| || Sbjct 65 GCAACTATAGTAAAACGAGTTCCGAGAAACTTTCCTGCAACGTAGTGTCGCCATGCCTTG 124 Query 210 GCTCATTTGGGCGTTCATCATTTGCAGAAGCAAAGAAGCGATTGGAAAAGCTCGAGCAAG 269 || |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 125 GCCCATTTGGGCGTTCATCATTTGCAGAAGCAAAGAAGCGATTGGAAAAGCTCGAGCGAG 184 Query 270 ATTATCAACACACCTACGAGAAGTACACAGAACTACAATCAGACAGGTATATGTACTACA 329 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 185 ATTATCAACACACCTACAAGAAGTACACAGAACTACAATCAGACAGGTATAGGTACTACA 244 Query 330 TTGCTTTT-CAACGTCCAGGACATCACAGTCGCTGGGTTGGCTACTGTATCGATCACATC 388 ||| |||| |||| |||||||||||||||||||||||||||||||||||||| || || | Sbjct 245 TTG-TTTTACAACATCCAGGACATCACAGTCGCTGGGTTGGCTACTGTATCGTTCGCAGC 303 Query 389 GAAAATGTAGTAGAGCAACTGCAGAATGTTCTTGACAAGCTGAATACAGAAGAAGCATCA 448 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 304 AAAAATGTAGTGGAGCAACTGCAGAATGTTCTTGACAAGCTGAATACAGAAGAAGCATCA 363 Query 449 CAAAGAGGAAGAGAAACACCAACAAACGGTAAGCAATTCTTCTTGACGCACGGTTGTAAA 508 |||||||||||||||||||| ||||| || |||||||||||||||| ||||||| ||||| Sbjct 364 CAAAGAGGAAGAGAAACACCTACAAATGGCAAGCAATTCTTCTTGATGCACGGTCGTAAA 423 Query 509 AGCTTGGCACAAGAAAATATGGTACTTCAGAAGCTGAAAGCAGAAACCAAAGAGCAATAC 568 ||||||||||||||||| |||||||| ||| ||||||||||||||| ||||||||||||| Sbjct 424 AGCTTGGCACAAGAAAAGATGGTACTGCAGCAGCTGAAAGCAGAAAACAAAGAGCAATAC 483 Query 569 ACTGATGGTCTGTGTCAAGAAACAATTGATGTCAAAAGAATTAATTG-GGAGTTCATTTG 627 |||||||| ||||| |||||||||||||| ||||||||||||||| | |||||||| || Sbjct 484 ACTGATGGCCTGTGCCAAGAAACAATTGACGTCAAAAGAATTAAT-GAGGAGTTCAGGTG 542 Query 628 CATTCAAAGAATAGTTCCACAGAATAGCAACAAGAAATCTGTACACGATCTGTTGAGGAG 687 |||||||||||||||||||| || |||||||||||||||| |||| |||||||||||||| Sbjct 543 CATTCAAAGAATAGTTCCACGGACTAGCAACAAGAAATCTATACATGATCTGTTGAGGAG 602 Query 688 AGTTAATGAGACACAGAAGTTGACAGAAAAAGCTATTTCCAATGGTGCACTAATGGGCAA 747 |||||| |||| | ||||| ||||| |||| ||||||||||||||||||||||||||||| Sbjct 603 AGTTAAAGAGATAAAGAAGCTGACACAAAAGGCTATTTCCAATGGTGCACTAATGGGCAA 662 Query 748 CCTCACGAGTCTGGACAATATGAAAAATTCTACAAGTGACTTAATAAAGATTGTGACGAA 807 || ||||||||||||||||||||||||||||||||||| |||||||||| || ||| ||| Sbjct 663 CCACACGAGTCTGGACAATATGAAAAATTCTACAAGTGTCTTAATAAAG-TT-TGA-GAA 719 Query 808 TGTACACAGAGAGTTAGAGAAAGAGAAAATAGAGTTAGAGAATATTTTGCAAGACAGAAT 867 | | || | | | || ||| | | |||||||||||||||||||||| | Sbjct 720 AG-A----GA-A-T-A-AG---GAG----T----T-AGAGAATATTTTGCAAGACAGAGT 758 Query 868 ACATTTTGCAAgaaaaaatgaaaaaggatacatagaaaaaataagggttttacgggaaaa 927 |||||||||||||||||||||||||||||||| |||||||| |||||| || ||||||| Sbjct 759 ACATTTTGCAAGAAAAAATGAAAAAGGATACACCGAAAAAATGAGGGTTCTATGGGAAAA 818 Query 928 atgtaaatGCATAGTTGAGAGACGTGATGCAGAAAAGAAATACTTGCTCGATTTGGAGAA 987 |||||||||||||| ||||| |||||||||||||||||||| |||||||||||| |||| Sbjct 819 ATGTAAATGCATAGGTGAGAAACGTGATGCAGAAAAGAAATTTTTGCTCGATTTGAAGAA 878 Query 988 AAATTTCAGGGATATGAACAAAACTGCTTCACAGAGAAAAGGCTGCCGAAAAGG-TAA 1044 || ||||||||| ||| |||||||||||||||| |||||||||||||||||||| ||| Sbjct 879 AAGTTTCAGGGAGATGCACAAAACTGCTTCACAAAGAAAAGGCTGCCGAAAAGGGTAA 936 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40029062850 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5