BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54540.1
Length=2500
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938377 jgi|Araly1|938377|scaffold_502568.1 3773 0.0
Ahg930873 jgi|Araly1|930873|scaffold_303330.1 1471 0.0
Ahg319015 jgi|Araly1|319015|fgenesh1_pm.C_scaffold_3002031 726 0.0
Ahg333316 jgi|Araly1|333316|fgenesh1_pm.C_scaffold_396000001 721 0.0
Ahg938376 jgi|Araly1|938376|scaffold_502567.1 643 0.0
> Ahg938377 jgi|Araly1|938377|scaffold_502568.1
Length=2308
Score = 3773 bits (2043), Expect = 0.0
Identities = 2210/2292 (96%), Gaps = 6/2292 (0%)
Strand=Plus/Plus
Query 100 AATGGGTAAGAAGAAGTCAGACGAGAGTGCTGCTACCACAAAGGTGAAGCCAAGTGGGAA 159
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 20 AATGGGTAAGAAGAAGTCAGACGAGAGTGCTGCTACCACGAAGGTGAAGCCAAGTGGGAA 79
Query 160 AGATGCTTCGAAAGATTCTAAAAAAGAGAAATTGTCAGTCTCGGCTATGCTTGCAGGCAT 219
||||||||| |||||||||||||| |||||||| |||||||| || ||||||||||||||
Sbjct 80 AGATGCTTCTAAAGATTCTAAAAAGGAGAAATTATCAGTCTCCGCCATGCTTGCAGGCAT 139
Query 220 GGATCAGAAAGATGATAAACCGAAGAAGGGCTCATCATCTAGAACCAAGGCTGCTCCGAA 279
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||
Sbjct 140 GGATCAGAAAGATGATAAACCGAAGAAGGGCTCATCATCTAGATCCAAAGCTGCTCCAAA 199
Query 280 ATCTACATCTTACACTGATGGCATAGATCTTCCTCCTTCTGATGAAGAAGACGACGGTGA 339
||||||||| |||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 200 ATCTACATCCTACACTGATGGCATAGATCTTCCTCCTTCTGACGAAGAAGATGAAGGTGA 259
Query 340 ATCTGATGAGGAAGAGAGACAGAAGGAAGCAAGGAGGAAGCTGAAGAGTGAACAAAGGCA 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 ATCTGATGAGGAAGAGAGACAGAAGGAAGCAAGGAGGAAGCTGAAGAGTGAACAAAGGCA 319
Query 400 CCTTGAGATATCTGTGACTGATAAGGAACAAAAGAAGCGAGAGGCGAAAGAAAGATTAGC 459
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 320 CCTTGAGATATCTGTGACTGATAAGGAACAAAAGAAGCGAGAGGTGAAAGAAAGATTAGC 379
Query 460 TCTTCAGGCTGCAGAG-TCGGCAAAGAGGGAGG-CTATGAAGGACGATCATGATGCATTC 517
||| |||||||||||| | |||||||||||||| || |||||||||| ||||||||||||
Sbjct 380 TCTCCAGGCTGCAGAGAT-GGCAAAGAGGGAGGCCT-TGAAGGACGACCATGATGCATTC 437
Query 518 ACGGTTGTTATTGGAAGCAAGACCTCAGTGCTTGAAGGAGACGACAT-GGCTGATGCAAA 576
||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 438 ACGGTTGTTATTGGAAGCAAGACCTCAGTGCTTGAAGGAGACGAC-TCGGCGGATGCAAA 496
Query 577 TGTTAAGGATATTACCATAGAATCTTTTTCTGTATCTGCTCGAGGTAAAGAGCTTTTGAA 636
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 497 TGTTAAAGATATTACCATCGAATCTTTTTCTGTATCTGCTCGAGGTAAAGAGCTTTTGAA 556
Query 637 GAATGCTTCTGTCAGGATTTCACATGGTAAAAGGTATGGGTTGATCGGGCCAAACGGAAT 696
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 GAATGCCTCTGTCAAGATTTCACATGGTAAAAGGTATGGGTTGATCGGGCCAAACGGAAT 616
Query 697 GGGAAAGTCTACACTGTTAAAGCTTTTAGCTTGGAGGAAGATTCCAGTGCCAAAGAATAT 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 GGGAAAGTCTACACTGTTAAAGCTTTTAGCTTGGAGGAAGATTCCAGTGCCAAAGAATAT 676
Query 757 TGATGTTCTTCTTGTTGAGCAAGAGGTGGTTGGTGATGAAAAGAGTGCTCTGAATGCAGT 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 TGATGTTCTTCTTGTTGAGCAAGAGGTGGTTGGTGATGAAAAGAGTGCTCTGAATGCAGT 736
Query 817 TGTCTCTGCCAATGAAGAGTTGGTTAAGCTACGGGAAGAGGCTGAAGCTCTGCAGAAGTC 876
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 TGTTTCTGCCAATGAAGAGTTGGTTAAGCTACGGGAAGAGGCTGAAGCTCTGCAGAAGTC 796
Query 877 GTCTTCTGGAGCTGATGGAGAAAATGTTGATGGTGAGGATGATGATGATACTGGAGAAAA 936
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 797 GTCTTCGGGAGCTGATGGAGAAAATGTTGATGGCGAGGATGATGATGATACTGGAGAAAA 856
Query 937 GCTTGCTGAACTGTATGACAGGCTGCAGATTTTAGGGTCAGATGCTGCTGAAGCACAGGC 996
|||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 857 GCTTGCTGAATTGTATGACAGGCTGCAAATTTTGGGGTCAGATGCTGCTGAAGCACAGGC 916
Query 997 ATCCAAAATTCTTGCGGGGTTAGGTTTCACAAAAGATATGCAAGTGCGTGCGACTCAGTC 1056
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 917 TTCCAAAATTCTTGCGGGGTTAGGTTTCACAAAAGATATGCAAGTGCGTCCAACTCAGTC 976
Query 1057 CTTCAGTGGTGGCTGGAGGATGCGAATATCATTAGCTAGAGCTCTGTTCGTGCAACCTAC 1116
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 977 CTTCAGTGGTGGCTGGAGGATGCGAATATCGTTAGCTAGAGCTCTGTTTGTGCAGCCTAC 1036
Query 1117 CCTTTTGCTGTTAGATGAACCCACTAACCATCTTGACCTGAGAGCTGTTCTATGGTTAGA 1176
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TCTTTTACTGTTAGATGAACCCACTAACCATCTTGACCTGAGAGCTGTTCTATGGTTAGA 1096
Query 1177 GGAGTATTTGTGTCGCTGGAAGAAGACACTAGTTGTTGTTTCACATGACCGGGACTTCCT 1236
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1097 AGAGTATTTGTGTCGCTGGAAGAAGACGCTAGTTGTTGTTTCACATGACCGGGACTTCCT 1156
Query 1237 CAACACAGTCTGCACGGAGATAATACATCTCCATGACCAAAATCTCCACTTCTACCGTGG 1296
|||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 1157 CAACACAGTCTGCACGGATATAATACATCTCCATGACCAGAATCTCCACTTCTATCGTGG 1216
Query 1297 TAATTTCGATGGTTTTGAAAGCGGATATGAGCAGCGTCGCAAGGAGATGAACAAAAAATT 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 TAATTTCGATGGTTTTGAAAGCGGATATGAGCAGCGTCGCAAGGAGATGAACAAAAAATT 1276
Query 1357 TGATGTCTACGACAAACAGATGAAAGCAGCGAAGAGGACTGGAAACCGGGGTCAACAGGA 1416
||||||||| || |||||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 1277 TGATGTCTATGAGAAACAGATTAAAGCAGCTAAGAGGACTGGAAACCGGGCTCAACAGGA 1336
Query 1417 GAAGGTAAAGGACAGGGCCAAGTTTACTGCTGCAAAAGAAGCATCCAAGAGTAAGTCAAA 1476
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1337 GAAGGTAAAGGACAGGGCCAAGTTTACTGCAGCAAAAGAAGCATCCAAGAGTAAGGCAAA 1396
Query 1477 GGGCAAGACAGTGGATGAAGAAGGCCCAGCACCAGAAGCTCCAAGGAAGTGGAGAGATTA 1536
||| ||| || ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1397 GGGTAAGGCACTGGATGAAGAAGGCCCAGCACCAGAAGCTCCAAGGAAATGGAGAGATTA 1456
Query 1537 CAGTGTGGTGTTCCACTTCCCAGAACCAACTGAGCTCACTCCTCCTCTTCTGCAGTTAAT 1596
||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 1457 TAGTGTGGTGTTCCACTTTCCAGAACCAACCGAGCTCACTCCTCCTCTTCTACAGTTGAT 1516
Query 1597 TGAGGTTAGCTTCAGCTATCCCAACAGGCCAGATTTCAGACTCTCGAATGTTGATGTAGG 1656
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1517 TGAGGTTAGCTTCAGCTACCCCAACAGGCCAGATTTCAGGCTCTCGAATGTTGATGTAGG 1576
Query 1657 TATCGATATGGGGACACGGGTTGCGATAGTTGGGCCTAACGGAGCAGGAAAGTCCACTCT 1716
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1577 TATCGATATGGGGACACGGGTTGCTATAGTTGGGCCTAACGGAGCAGGAAAGTCCACTCT 1636
Query 1717 ATTAAATCTTCTTGCGGGAGATTTAGTTCCAACAGAGGGTGAAATGAGAAGAAGCCAGAA 1776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1637 ATTAAATCTTCTTGCGGGAGATTTAGTTCCAACAGAGGGTGAAATGAGAAGAAGCCAGAA 1696
Query 1777 GCTGAGGATTGGCAGGTATTCTCAGCATTTTGTTGACCTTTTAACAATGGGGGAAACACC 1836
||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 1697 GCTGAGGATTGGCAGGTATTCTCAGCACTTTGTTGACCTGTTGACAATGGGGGAAACACC 1756
Query 1837 GGTTCAGTATCTCCTTCGTCTTCATCCTGACCAAGAGGGATTTAGCAAGCAAGAGGCAGT 1896
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1757 GGTTCAGTATCTTCTTCGTCTTCATCCTGACCAAGAGGGATTTAGCAAGCAAGAGGCAGT 1816
Query 1897 GCGAGCGAAGCTAGGCAAGTTTGGGCTACCAAGTCACAATCACTTATCTCCAATTGCGAA 1956
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1817 GCGAGCGAAGCTAGGCAAGTTTGGGCTACCAAGTCACAACCACTTGTCTCCAATTGCGAA 1876
Query 1957 ATTGTCTGGAGGACAAAAGGCTAGGGTTGTGTTCACCTCGATCTCAATGTCAAAACCACA 2016
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1877 ATTGTCCGGAGGACAAAAGGCTAGGGTTGTGTTCACCTCGATCTCAATGTCAAAGCCTCA 1936
Query 2017 CATTTTGCTTCTGGACGAGCCTACAAATCACTTAGACATGCAGAGTATAGATGCCTTGGC 2076
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1937 CATTTTGCTTCTGGACGAGCCTACAAATCACTTAGACATGCAGAGTATAGATGCGTTGGC 1996
Query 2077 GGATGCACTAGATGAGTTCACAGGTGGAGTTGTGTTGGTGAGTCACGACTCGAGACTCAT 2136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1997 GGATGCACTAGATGAGTTCACAGGTGGAGTTGTGTTGGTGAGTCACGACTCGAGACTCAT 2056
Query 2137 ATCACGTGTATGTGCGGAAGAGGAGAAGAGTCAAATTTGGGTTGTAGAAGACGGAACAGT 2196
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2057 ATCGCGTGTCTGTGCGGAAGAAGAGAAGAGTCAAATTTGGGTTGTAGAAGACGGAACAGT 2116
Query 2197 GAATTTCTTCCCAGGCACATTTGAAGAGTACAAAGAAGATCTCCAAAGAGAAATCAAAGC 2256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2117 GAATTTCTTCCCAGGCACATTTGAAGAGTACAAAGAAGATCTCCAAAGAGAAATCAAAGC 2176
Query 2257 AGAAGTTGATGAGTGAAGTTTTGTTGTTAGCTTCTAAGGTAAACTCAAACTCCTTTATGT 2316
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 2177 AGAAGTTGATGAGTGAAGTTTTGTTGTTAGCTTCTAAGGTAAACTCAGTCTCCTTTATAT 2236
Query 2317 TTTATAACAAACTCAAAAAGTTTTGGACAATTTTATTTTTAGCAATCGTGTTCTTTCATC 2376
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2237 TTTATAACAAACTCAAAAAGTTTTGGACAATTTTATTTTTAGCAGTCGTGTTCTTTCATC 2296
Query 2377 ATTTGTGCGTTA 2388
||||||||||||
Sbjct 2297 ATTTGTGCGTTA 2308
> Ahg930873 jgi|Araly1|930873|scaffold_303330.1
Length=2191
Score = 1471 bits (796), Expect = 0.0
Identities = 1202/1396 (86%), Gaps = 35/1396 (3%)
Strand=Plus/Plus
Query 917 GATGATGAT-ACTGGAGAAAAGCTTGCTGAACTGTATGACAGGCTGCAGATTTTAGGGTC 975
||||||| | | ||| ||||||||||||||| ||||||| ||||| || || || |||||
Sbjct 798 GATGATGCTGA-TGGGGAAAAGCTTGCTGAATTGTATGAGAGGCTACATATGTTGGGGTC 856
Query 976 AGATGCTGCTGAAGCACAGGCATCCAAAATTCTTGCGGGGTTAGGTTTCACAAAAGATAT 1035
||||||||||||||| ||||| ||||||||||||||||| |||||||||||| |||||||
Sbjct 857 AGATGCTGCTGAAGCGCAGGCTTCCAAAATTCTTGCGGGTTTAGGTTTCACAGAAGATAT 916
Query 1036 GCA-AGTGCGTGCGACTCAG-TCCTTCAGTGGTGGCTGGAGGATGCGAATATCATTAGCT 1093
| | || | ||| ||| || | | |||||||||||||||||||||||||||||||||||
Sbjct 917 G-ATAGCGGGTGAAACTAAGTTGC-TCAGTGGTGGCTGGAGGATGCGAATATCATTAGCT 974
Query 1094 AGAGCTCTGTTCGTGCAACCTACCCTTTTGCTGTTAGATGAACCCACTAACCATCTTGAC 1153
|||||||| || |||| ||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 975 AGAGCTCTCTTTGTGCGACCTACCCTTTTGTTGTTAGATGAACCCACTAACCATCTCGAC 1034
Query 1154 CTGAGAGCTGTTCTATGGTTAGAGGAGTATTTGTGTCGCTGGAAGAAGACACTAGTTGTT 1213
||||||||||||||||||||||| |||||| | || || |||||||| || || ||||||
Sbjct 1035 CTGAGAGCTGTTCTATGGTTAGAAGAGTATCTATGCCGGTGGAAGAATACGCTGGTTGTT 1094
Query 1214 GTTTCACATG-ACCGGGACTTCCTCAACACAGTCTGCACGGAGATAATACATCTCCATGA 1272
|||||||||| | || ||||||||||| | ||||||||||| ||||||||| | || ||
Sbjct 1095 GTTTCACATGGAGTGG-ACTTCCTCAACGCTGTCTGCACGGATATAATACATTTGCACGA 1153
Query 1273 CCAAAA-TCTCCACTTCTACCGTGGTAATTTCGATGGTTTTGAAAGCGGATATGAGCAGC 1331
| || | ||||||||| || |||||||||| ||||| || |||| ||||||| ||||
Sbjct 1154 C-AAGAGTCTCCACTTGTATCGTGGTAATTACGATGCTTACGAAACCGGATATCTTCAGC 1212
Query 1332 GTCGCAAGGAGATGAACAAAAAATTTGATG-TCTACGACAAACAGATGAAAGCAGCGAAG 1390
| || ||||||||||||||||| | ||| | | | | | |||| |||| ||||||| |||
Sbjct 1213 GACGTAAGGAGATGAACAAAAAGTCTGA-GATTTTCCAGAAACGGATGGAAGCAGCTAAG 1271
Query 1391 AGGACTGGAAACCGGGGTC-AACAGGAGAAGGTAAAGGACAGGGCCAAGTTTACTGCTGC 1449
||| |||||||| ||| | |||||||||||||||||| | |||||||| || |||| ||
Sbjct 1272 AGGTCTGGAAACAGGG-TAGAACAGGAGAAGGTAAAGGCCTGGGCCAAGCTTGCTGCAGC 1330
Query 1450 AAAAGAAGCATCCAAGAGTAAGTCAAAGGGCAAGAC-AGTGGATGAAGAAGGCCCAGCAC 1508
||||||||||||||| ||||| ||||||| ||||| | ||||||| || ||||||||||
Sbjct 1331 GAAAGAAGCATCCAAGCGTAAGGCAAAGGGTAAGACGA-TGGATGACGAGGGCCCAGCAC 1389
Query 1509 CAGAAGCTCCAAGGAAGTGGAGAGATTACA-GTGTGGTGTTCCACTTCCCAGAACCAACT 1567
|||||||||||||||||||||| ||||| | | |||||| || | || |||||||||||
Sbjct 1390 CAGAAGCTCCAAGGAAGTGGAGTGATTATAAG-GTGGTGCTCGATTTTCCAGAACCAACC 1448
Query 1568 GAGCTCACTCCTCCTCTTCTGCAGTTAATTGAGGTTAGCTTCAGCTATCCCAA-CAGGCC 1626
|||||| ||| ||||||||||||||| ||||||||||||||| |||| ||||| || | |
Sbjct 1449 GAGCTCCCTCGTCCTCTTCTGCAGTTGATTGAGGTTAGCTTCTGCTA-CCCAAACAAGTC 1507
Query 1627 AGATTTCAGACTCTCGAATGTTGATGTAGGTATCGATATGGGGACACGGGTTGCGATAGT 1686
||||||||| ||||| ||||| ||| ||||||| |||||||||||||| || || |||||
Sbjct 1508 AGATTTCAGGCTCTCAAATGTGGATTTAGGTATAGATATGGGGACACGAGTAGCAATAGT 1567
Query 1687 TGGGCCTAACGGAGCAGGAAAGTCCACTCTATTAAATCTTCTTGCGGGAGATTTAGTTCC 1746
||||||||||||||| |||||||||||||| || |||||| |||||||||||||||||||
Sbjct 1568 TGGGCCTAACGGAGCTGGAAAGTCCACTCTTTTGAATCTTATTGCGGGAGATTTAGTTCC 1627
Query 1747 AACAGAGGGTGAAATGAGAAGAAGCCAGAAGCTGAGGATTGGCAGGTATTCTCAGCATTT 1806
|| ||||||||| ||||||||||||||||||| || || |||||||| || ||||| ||
Sbjct 1628 GACTGAGGGTGAAGTGAGAAGAAGCCAGAAGCTAAGAATCGGCAGGTACTCGCAGCACTT 1687
Query 1807 TGTTGACCTTTTAACAATGGGGGAAACACCGGTTCAGTATCTCCTTCGTCT-TCATCCTG 1865
|||||||| ||| ||||| |||| ||||||||| ||||||| |||||||| | ||||||
Sbjct 1688 TGTTGACCAGTTATCAATGTGGGAGACACCGGTTGAGTATCTTCTTCGTCTGT-ATCCTG 1746
Query 1866 ACCAAGAGGGATTTAGCAAGCAAGAGGCAGTGCGAGCGAAGCTAGGCAAGTTTGGGCTAC 1925
|||||||||||| |||||| |||||||| ||||| || || || |||||||||||||||
Sbjct 1747 ACCAAGAGGGATGTAGCAAACAAGAGGCGGTGCGTGCCAAACTGGGCAAGTTTGGGCTAA 1806
Query 1926 CAAGTCACAATCACTT--ATCTCCAATTGCGAAATTGTCTGGAGGACAAAAGGCTAGGGT 1983
|| || | || || || | |||||| |||||||||||||||||||||||||||||||||
Sbjct 1807 CAGGTGAAAACCA-TTCCA-CTCCAACTGCGAAATTGTCTGGAGGACAAAAGGCTAGGGT 1864
Query 1984 TGTGTTCACCTCGATCTCAATGTCAAAACCACACATTTTGCTTCTGGACGAGCCTACAAA 2043
|||||| ||||| ||||||||||| || ||||||||||||||||| |||||||| |||||
Sbjct 1865 TGTGTTAACCTCAATCTCAATGTCGAAGCCACACATTTTGCTTCTTGACGAGCCAACAAA 1924
Query 2044 TCACTTAGACATGCAGA-GTATAGATGCCTTGGCGGATGCACTAGATGAGTTCACAGGTG 2102
|||| | |||||||||| | |||||||||||||||||||||||||||||||||| ||| |
Sbjct 1925 TCACCTCGACATGCAGACG-ATAGATGCCTTGGCGGATGCACTAGATGAGTTCAAAGGAG 1983
Query 2103 GAGTTGTGTTGGTGAGTCACGACTCGAGACTCATAT-CACGTGTATGTGCGGAAGAGGAG 2161
|||||||||||||||| |||||||||||||||||| | ||||| |||| ||| ||||||
Sbjct 1984 GAGTTGTGTTGGTGAGCCACGACTCGAGACTCATAAGC-CGTGTCTGTGAGGACGAGGAG 2042
Query 2162 AAGAGTCAAATTTGGGTTGTAGAAGACGGAACAGTGAATTTCTTCCCAGGCACATTTGAA 2221
|||||| ||||||||||||| |||| ||| ||||||| |||||||| |||||| ||||||
Sbjct 2043 AAGAGTGAAATTTGGGTTGTGGAAGCCGGGACAGTGACTTTCTTCCGAGGCACGTTTGAA 2102
Query 2222 GAGTACAAAGAAGATCTCCAAAG-AGAAATCAAAGCAGAAGTTGATGAGTGAAGTTTTGT 2280
|||||||||||||| ||| | || ||||||||||||||| |||||||||| || || | |
Sbjct 2103 GAGTACAAAGAAGAACTC-ATAGGAGAAATCAAAGCAGAGGTTGATGAGTTAACTTGTCT 2161
Query 2281 TGTTAGCTTCTAAGGT 2296
|| ||| |||||||
Sbjct 2162 TG---GCTGCTAAGGT 2174
Score = 470 bits (254), Expect = 3e-131
Identities = 637/814 (78%), Gaps = 57/814 (7%)
Strand=Plus/Plus
Query 90 TACAGTTTTAAATGGGTAAGAAGAAGTCAGACGAGAGTGCTGCTACCACAAAGGTGAAGC 149
|||||| |||||||||||||||||||||||||||| || ||||| || || ||
Sbjct 10 TACAGTGCTAAATGGGTAAGAAGAAGTCAGACGAGATTGTTGCTATCA----GG--AA-- 61
Query 150 CAAGTGGGAAAGATGCTTCGAAAGATTCTAAAAAAGAGAAA-TTGTCAGTC-TCGGCTAT 207
||||||| || ||| |||||||| || || |||||| || |||||| | | | ||
Sbjct 62 ----TGGGAAATATACTTTTAAAGATTCGAAGAAGGAGAAAATT-TCAGTCCTAGCC-AT 115
Query 208 GCTTGCAGGCATGGATCAGAAAGATGATAAACCGAAGA--A----GGGCTCATCATCTAG 261
|||||| |||||||| |||||||||||||||| |||| | ||||||||| || ||
Sbjct 116 TCTTGCAAGCATGGATAAGAAAGATGATAAACCCAAGATCAATAAGGGCTCATCGTCCAG 175
Query 262 AACCAAGGCTGCTCCGAAA-TCTACATCTTACACTGATGGCATAGATCT-TCCTCCT--T 317
| ||||| |||||| ||| | | | || |||||||||| ||||||| | ||||||| |
Sbjct 176 AGCCAAGACTGCTCTAAAAGTTT-CGTCCTACACTGATGACATAGAT-TATCCTCCTAAT 233
Query 318 C-TGATGAAGAAGACGA---C---GGTGAATCTGATGAGGAAGAGAGACAGAAGGAAGCA 370
| |||| |||||||||| | || | | || |||| || | ||||||| | |||
Sbjct 234 CATGATCAAGAAGACGAAGACCAAGGCGTTTTTGCTGAGAAACAAAGACAGATGCTTGCA 293
Query 371 AGGAGGAAGCTGAAGAGTGAACAAAGGCACCTTGAGATATCTGTGACTGATAAGGA-ACA 429
| ||| || | |||| | || ||| | | || || | ||||||||| |||| | |||
Sbjct 294 ATGAGCAATCAGAAGGGCAAAGAAAAGAAACTCGATTTCTCTGTGACTCCTAAG-ACACA 352
Query 430 AAAGAAG-CGAGAGGCGAAAGAAAGAT-TA-GCTCTTCAGGCTGCAGAG-TCGGCAAAGA 485
|| |||| | | ||| | || || | | ||||| | |||||||||| | || |||||
Sbjct 353 AATGAAGGCAA-AGG-GTAATCAAT-TCTCCGCTCTCCTGGCTGCAGAGATAGG-AAAGA 408
Query 486 GGGAGGC-TATGAAGGACGATCATGATGCATTCACGGTTGTTATTGGAAGCAAGACCTCA 544
|||||| | |||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 409 AGGAGGCCT-TGAAGGACGACCATGATGCATTCACGGTTGTTATGGGAAGCAAGACATCG 467
Query 545 GTGCTTGAAGGAGACGA--CATGGCTGATGCAAATGTTAAGGATATTACCAT-AGAATCT 601
|||||||| ||||| || || || ||||| ||||| || ||||||| || || ||
Sbjct 468 GTGCTTGATGGAGAAGAAACA-GGA-GATGCGAATGTCAAAGATATTAAGATCAGT-TCG 524
Query 602 TTTTCTGTATCTGCTCGAGGTAAAGAGCTTTTGAAGAATGCTTCTGTCAGGATTTCACAT 661
|||||||| |||| |||||| ||||||||| | | |||||| ||| ||| ||| ||||||
Sbjct 525 TTTTCTGTCTCTGTTCGAGGGAAAGAGCTTCTCACGAATGCCTCTCTCATGATATCACAT 584
Query 662 GGTAAAAGGTATGGGTTGATCGGGCC-AAACGGAATGGGAAAGTCTACACTGTTAAAGCT 720
|| ||||||||||| ||| | ||||| ||| |||| ||| |||||||||||| | |||||
Sbjct 585 GGGAAAAGGTATGGATTGGT-GGGCCCAAATGGAAAGGGTAAGTCTACACTGCTCAAGCT 643
Query 721 TTTAGCTTGGAGGAAGATTCCAGTGCCAAAGAATATTGATGTTCTTCTTGTTGAGCAAGA 780
||| || ||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 644 TTTGGCATGGAGGAAGATTCCAGTTCCCAAGAATATTGACATTCTTCTTGTTGAGCAAGA 703
Query 781 GGTGGTTGGTGATGAAAAGAGTGCTCTG-AATGCAGTTGTCTCTGCCAATGAAGAGTTGG 839
|||||| ||||||| ||||||||||||| || ||||||||||||| ||| ||||| ||
Sbjct 704 GGTGGTCGGTGATGGAAAGAGTGCTCTGGAAA-CAGTTGTCTCTGCTAATCAAGAGCTGT 762
Query 840 TTAAGCTACGGGAAGAGGCTGAAGCTCTGCAGAA 873
||| | || ||||||| |||| ||||||| ||||
Sbjct 763 TTAGGTTAAGGGAAGAAGCTGCAGCTCTGGAGAA 796
> Ahg319015 jgi|Araly1|319015|fgenesh1_pm.C_scaffold_3002031
Length=630
Score = 726 bits (393), Expect = 0.0
Identities = 556/635 (88%), Gaps = 10/635 (2%)
Strand=Plus/Plus
Query 1664 ATGGGGACACGGGTTGCGATAGTTGGGCCTAACGGAGCAGGAAAGTCCACTCTATTAAAT 1723
||||||||||| || ||||||||||||||||||||||| |||||||| ||||| || |||
Sbjct 1 ATGGGGACACGAGTAGCGATAGTTGGGCCTAACGGAGCTGGAAAGTCGACTCTTTTGAAT 60
Query 1724 CTTCTTGCGGGAGATTTAGTTCCAACAGAGGGTGAAATGAGAAGAAGCCAGAAGCTGAGG 1783
||| ||||||||||||||||||| || ||||||||| |||||||||||||||||||||||
Sbjct 61 CTTATTGCGGGAGATTTAGTTCCGACTGAGGGTGAAGTGAGAAGAAGCCAGAAGCTGAGG 120
Query 1784 ATTGGCAGGTATTCTCAGCATTTTGTTGACCTTTTAACAATGGGGGAAACACCGGTTCAG 1843
|| |||||||| || ||||| |||||||| | ||| ||||| |||| ||||||||| ||
Sbjct 121 ATCGGCAGGTACTCGCAGCACTTTGTTGATCAGTTATCAATGTGGGAGACACCGGTTGAG 180
Query 1844 TATCTCCTTCGTCT-TCATCCTGACCAAGAGGGATTTAGCAAGCAAGAGGCAGTGCGAGC 1902
||||| |||||||| | |||||||||||||||||| |||||| |||||||| ||||| ||
Sbjct 181 TATCTTCTTCGTCTGT-ATCCTGACCAAGAGGGATGTAGCAAACAAGAGGCGGTGCGTGC 239
Query 1903 GAAGCTAGGCAAGTTTGGGCTACCAAGTCACAATCACTT-ATCTCCAATTGCGAAATTGT 1961
|| || ||||||||||||||| || || | || || || | |||||| |||||||||||
Sbjct 240 AAAACTGGGCAAGTTTGGGCTAACAGGTGAAAACCA-TTCAACTCCAACTGCGAAATTGT 298
Query 1962 CTGGAGGACAAAAGGCTAGGGTTGTGTTCACCTCGATCTCAATGTCAAAACCACACATTT 2021
|||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||
Sbjct 299 CTGGAGGACAAAAGGCTAGGGTTGTGTTAACCTCAATCTCAATGTCGAAGCCACACATTT 358
Query 2022 TGCTTCTGGACGAGCCTACAAATCACTTAGACATGCAGA-GTATAGATGCCTTGGCGGAT 2080
||||||| |||||||| ||||||||| | |||||||||| | ||||||||||||||||||
Sbjct 359 TGCTTCTTGACGAGCCAACAAATCACCTCGACATGCAGACG-ATAGATGCCTTGGCGGAT 417
Query 2081 GCACTAGATGAGTTCACAGGTGGAGTTGTGTTGGTGAGTCACGACTCGAGACTCATAT-C 2139
|||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||| |
Sbjct 418 GCACTAGATGAGTTCAAAGGAGGAGTTGTGTTGGTGAGCCACGACTCGAGACTCATAAGC 477
Query 2140 ACGTGTATGTGCGGAAGAGGAGAAGAGTCAAATTTGGGTTGTAGAAGACGGAACAGTGAA 2199
||||| |||| ||| |||||||||||| |||||||| |||| ||| |||| |||||||
Sbjct 478 -CGTGTCTGTGAGGATGAGGAGAAGAGTGAAATTTGGCTTGTGGAAAACGGGACAGTGAC 536
Query 2200 TTTCTTCCCAGGCACATTTGAAGAGTACAAAGAAGATCTCCAAAG-AGAAATCAAAGCAG 2258
|||||||| |||||| |||||||||||||||||||| ||| | | ||||||||||||||
Sbjct 537 TTTCTTCCGAGGCACGTTTGAAGAGTACAAAGAAGAACTC-ATTGGAGAAATCAAAGCAG 595
Query 2259 AAGTTGATGAGTGAAGTTTTGTTGTTAGCTTCTAA 2293
| |||||||||| || || | ||||| ||| ||||
Sbjct 596 AGGTTGATGAGTTAACTTCTCTTGTTGGCTGCTAA 630
> Ahg333316 jgi|Araly1|333316|fgenesh1_pm.C_scaffold_396000001
Length=630
Score = 721 bits (390), Expect = 0.0
Identities = 555/635 (87%), Gaps = 10/635 (2%)
Strand=Plus/Plus
Query 1664 ATGGGGACACGGGTTGCGATAGTTGGGCCTAACGGAGCAGGAAAGTCCACTCTATTAAAT 1723
||||||||||| || ||||||||||||||||||||||| |||||||| ||||| || |||
Sbjct 1 ATGGGGACACGAGTAGCGATAGTTGGGCCTAACGGAGCTGGAAAGTCGACTCTTTTGAAT 60
Query 1724 CTTCTTGCGGGAGATTTAGTTCCAACAGAGGGTGAAATGAGAAGAAGCCAGAAGCTGAGG 1783
||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||
Sbjct 61 CTTATTGCGGGAGATTTAGTTCCGAGTGAGGGTGAAGTGAGAAGAAGCCAGAAGCTGAGG 120
Query 1784 ATTGGCAGGTATTCTCAGCATTTTGTTGACCTTTTAACAATGGGGGAAACACCGGTTCAG 1843
|| |||||||| || ||||| |||||||| | ||| ||||| |||| ||||||||| ||
Sbjct 121 ATCGGCAGGTACTCGCAGCACTTTGTTGATCAGTTATCAATGTGGGAGACACCGGTTGAG 180
Query 1844 TATCTCCTTCGTCT-TCATCCTGACCAAGAGGGATTTAGCAAGCAAGAGGCAGTGCGAGC 1902
||||| |||||||| | |||||||||||||||||| |||||| |||||||| ||||| ||
Sbjct 181 TATCTTCTTCGTCTGT-ATCCTGACCAAGAGGGATGTAGCAAACAAGAGGCGGTGCGTGC 239
Query 1903 GAAGCTAGGCAAGTTTGGGCTACCAAGTCACAATCACTT-ATCTCCAATTGCGAAATTGT 1961
|| || ||||||||||||||| || || | || || || | |||||| |||||||||||
Sbjct 240 AAAACTGGGCAAGTTTGGGCTAACAGGTGAAAACCA-TTCAACTCCAACTGCGAAATTGT 298
Query 1962 CTGGAGGACAAAAGGCTAGGGTTGTGTTCACCTCGATCTCAATGTCAAAACCACACATTT 2021
|||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||
Sbjct 299 CTGGAGGACAAAAGGCTAGGGTTGTGTTAACCTCAATCTCAATGTCGAAGCCACACATTT 358
Query 2022 TGCTTCTGGACGAGCCTACAAATCACTTAGACATGCAGA-GTATAGATGCCTTGGCGGAT 2080
||||||| |||||||| ||||||||| | |||||||||| | ||||||||||||||||||
Sbjct 359 TGCTTCTTGACGAGCCAACAAATCACCTCGACATGCAGACG-ATAGATGCCTTGGCGGAT 417
Query 2081 GCACTAGATGAGTTCACAGGTGGAGTTGTGTTGGTGAGTCACGACTCGAGACTCATAT-C 2139
|||||||||||||||| ||| |||||||||||||| || |||||||||||||||||| |
Sbjct 418 GCACTAGATGAGTTCAAAGGAGGAGTTGTGTTGGTCAGCCACGACTCGAGACTCATAAGC 477
Query 2140 ACGTGTATGTGCGGAAGAGGAGAAGAGTCAAATTTGGGTTGTAGAAGACGGAACAGTGAA 2199
||||| |||| ||| |||||||||||| |||||||| |||| |||||||| |||||||
Sbjct 478 -CGTGTCTGTGAGGATGAGGAGAAGAGTGAAATTTGGCTTGTGGAAGACGGGACAGTGAC 536
Query 2200 TTTCTTCCCAGGCACATTTGAAGAGTACAAAGAAGATCTCCAAAG-AGAAATCAAAGCAG 2258
|||||||| |||||| |||||||||||||||||||| ||| | | ||||||||||||||
Sbjct 537 TTTCTTCCGAGGCACGTTTGAAGAGTACAAAGAAGAACTC-ATTGGAGAAATCAAAGCAG 595
Query 2259 AAGTTGATGAGTGAAGTTTTGTTGTTAGCTTCTAA 2293
| |||||||||| || || | ||||| ||| ||||
Sbjct 596 AGGTTGATGAGTTAACTTCTCTTGTTGGCTGCTAA 630
> Ahg938376 jgi|Araly1|938376|scaffold_502567.1
Length=2044
Score = 643 bits (348), Expect = 0.0
Identities = 555/654 (85%), Gaps = 17/654 (3%)
Strand=Plus/Plus
Query 1556 CCAGAACCAACTGAGCTC---ACTCCTCCTCTTCTGCAGTTAATTGAGGTTAGCTTCAGC 1612
||||||||||| |||||| ||| | ||||| || | ||||||| ||| |||| |
Sbjct 1329 CCAGAACCAACCGAGCTCAGTACTGATTCTCTTTTGGAACTAATTGATGTTTGCTTTTGT 1388
Query 1613 TATCCCAACAGGCCAGATTTCAGACTCTCGAATGTTGATGTAGGTATCGATATGGGGACA 1672
|| ||||||||| |||||||||| || | |||||||||||| |||||||||||| ||||
Sbjct 1389 TACCCCAACAGGACAGATTTCAGGCTATTAAATGTTGATGTATGTATCGATATGGAGACA 1448
Query 1673 CGGGTTGCGATAGTTGGGCCTAACGGAGCAGGAAAGTCCACTC-TATTAAATCTTCTTGC 1731
|||||||||||||||||||| || ||||||||||||||||||| || | |||||||||||
Sbjct 1449 CGGGTTGCGATAGTTGGGCCAAATGGAGCAGGAAAGTCCACTCTTA-TGAATCTTCTTGC 1507
Query 1732 GGGAGATTTAGTTCCAACAGAGGGTGAAATGAGAAGAAGCCAGAAGCTGAGGATTGGCAG 1791
||||| ||| |||||| ||||||||| ||| |||||||||||||||||||||||| ||
Sbjct 1508 AGGAGAACTAGATCCAACGGAGGGTGAAGTGATAAGAAGCCAGAAGCTGAGGATTGGGAG 1567
Query 1792 GTATTCTCAGCATTTTGTTGACCTTTTAACAATGGGGGAAACACCGGTTCAGTATCTCCT 1851
|||||||||||| ||||||||| |||||||||| ||||||||| ||| ||||||| ||
Sbjct 1568 GTATTCTCAGCACTTTGTTGACGGCTTAACAATGGAGGAAACACCCGTTGAGTATCTTCT 1627
Query 1852 TCGTCTTCATCCTGACCAAGAGGGATTTAGCAAG-CAAGAGGCAGTGCGAGCGAAGCTAG 1910
||| ||| || |||||||||||| ||| |||||| |||| | ||||| || || || |
Sbjct 1628 TCGCCTTTATTCTGACCAAGAGGAATTCAGCAAGCCAAG-TGTGGTGCGTGCAAAACT-G 1685
Query 1911 G-CAAGTTTGGGCTACCAA-GTCACAATC-ACTTATCTCCAATTGCGAAATTGTCTGGAG 1967
| ||||||||||||| || ||| ||| | || || |||||||| ||||| ||||||| |
Sbjct 1686 GCCAAGTTTGGGCTA-AAAGGTCGCAA-CTACGTAACTCCAATTTCGAAACTGTCTGGGG 1743
Query 1968 GACAAAAGGCTAGGGTTGTGTTCACCTCGATCTCAATGTCAAAACCACACATTTTGCTTC 2027
| |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 1744 GCCAAAAGGCTAGGGTTGTGTTCACCTCGATCTCAATGTCGAAGCCACACATTTTACTTC 1803
Query 2028 TGGACGAGCCTACAAATCACTTAGACAT-GCAGAGTATAGATGCCTTGGCG-GATGCACT 2085
| |||||||| ||||||||||||||||| | ||||||||||||| |||||| || ||| |
Sbjct 1804 TTGACGAGCCAACAAATCACTTAGACATTG-AGAGTATAGATGCGTTGGCGAGA-GCATT 1861
Query 2086 AGATGAGTTCACAGGTGGAGTTGTGTTGGTGAGTCACGACTCGAGACTCATATCACGTGT 2145
||||||||||||||| ||||||||||||||||||||||||||| | || |||| |||||
Sbjct 1862 AGATGAGTTCACAGGAGGAGTTGTGTTGGTGAGTCACGACTCGGGTTTCGTATCGCGTGT 1921
Query 2146 ATGTGCGGAAGAGGAGAAGAGTCAAATTTGGGTTGTAGAAGACGGAACAGTGAA 2199
||| ||| || | || || |||||||||||||||||||||||||||||||
Sbjct 1922 CTGTAAGGATGAAGTTAATAGGGAAATTTGGGTTGTAGAAGACGGAACAGTGAA 1975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94235266130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5