BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G54550.1 Length=867 Score E Sequences producing significant alignments: (Bits) Value Ahg898394 jgi|Araly1|898394|Al_scaffold_0005_2360 1173 0.0 > Ahg898394 jgi|Araly1|898394|Al_scaffold_0005_2360 Length=864 Score = 1173 bits (635), Expect = 0.0 Identities = 786/858 (92%), Gaps = 13/858 (2%) Strand=Plus/Plus Query 1 ATGCCTTTCCGTTCCAAAGTCCAGCCTATCAACATCAATGGTGTAGGGATGAGACAAGCG 60 |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1 ATGCCTTTCCGTTCTAAAGTCCAGCCTATCAACATCAATGGTGTAGCGATGAGACAAGCG 60 Query 61 CCGAGATCTCGACTGAAGCGGCTTTTTGAACGTCCGTTCTCTCTGAAGAACTTAGCCGGT 120 |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 61 CCGAGATCACGACTGAAGCGGCTTTTTGAACGTCAGTTCTCTCTGAAGAACTTAGCCGGT 120 Query 121 GTAGATTCATCGCTTTCTAG-AGAAAATTCC-GAAGAAATCGAACCGAGCTCGGTCTGTT 178 |||||||||||||||||||| || || ||| |||||| ||||||| ||||||||||||| Sbjct 121 GTAGATTCATCGCTTTCTAGAAG-CAA-TCCGGAAGAATTCGAACCTAGCTCGGTCTGTT 178 Query 179 TGAGGAGGATGGTGCAGAACTATATCGAGGATCCAGACAGTGAGAAACAATCAAAGTGCA 238 ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 179 TGAGGAGGATGGTTCAGAACTATATCGAGGATCCAGACAGTGAGACACAATCACAGTGCA 238 Query 239 TTGTTCGTAACCGA-TGCAACTGCTTCAGTGGAAGTGGTACTGATAGCTCTGACGAGGAC 297 |||||||||||| | | ||||||||||||||||||||| ||||||||||| ||||| | Sbjct 239 TTGTTCGTAACC-ACTTCAACTGCTTCAGTGGAAGTGGCACTGATAGCTCCGACGA-G-- 294 Query 298 GACGAAGAATCTTCTTCTTCTAGAAGAGTTCTTCGAAGCCTCAAGAGTCTTTTACTTTGT 357 |||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| Sbjct 295 GACGAAGAATCTTCTTCTTCCAGCAGAGTTCTTCGAAGCCTCAAGAGTCTGTTACTTTGT 354 Query 358 GCGAACGTATCTGAGCGTGATCTCGAGACGAAAA-CAACCGAGATCGTTGAGAGAGAGGT 416 || ||||| |||||| ||||||| ||||| |||| | | |||||| || |||||||||| Sbjct 355 GCTAACGTCTCTGAGAGTGATCTTGAGAC-AAAAGCCAGCGAGATTGTCAAGAGAGAGGT 413 Query 417 TGAAGATAAGTCCAGACTGAAAAATGTTGTTGATGAACTGGTGGCTTTAGGCTATGATGC 476 ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 414 TGAAGATAAGTCCAGACTGAAGAATGTTGCCGATGAACTGGTGGCTTTAGGCTATGATGC 473 Query 477 AGCAATATGCAAATCTCGCTGGGAGAAATCGAAAA-CGAAATCGTATTGTGTTCCCGCTG 535 ||||||||||||||||||||||||||||| |||| |||||||||| ||||||| |||| Sbjct 474 GGCAATATGCAAATCTCGCTGGGAGAAATC-AAAATTGAAATCGTATCGTGTTCCTGCTG 532 Query 536 GGGACTATGAGTATTTGGATGTTAACATTGGAGGAGAAAGAGTGCTCATCGACTTTGATT 595 ||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 533 GGGACTATGAGTACTTGGATGTTAACATCGGAGGAGAAAGAGTGCTCATCGACATTGATT 592 Query 596 TCCAATCGAAGTTCGAAATTGCTAGATCGAGTGAGACTTACGAGTCGATATCGAAGACAT 655 ||||||||||||| || ||||||| | | | ||||||||||||||||||||||||||| Sbjct 593 TCCAATCGAAGTTTGAGATTGCTAAACCAACCAAGACTTACGAGTCGATATCGAAGACAT 652 Query 656 TGCCTTACGTCTTTGTTGGACAAGTTGACAGGTTGACGAAGGTTGTGGTATTTTTGTCTA 715 ||||| || | ||||||||||||||||| ||||| | ||| |||||||| ||| |||||| Sbjct 653 TGCCTAACATTTTTGTTGGACAAGTTGAGAGGTTAAAGAAAGTTGTGGTGTTTGTGTCTA 712 Query 716 AAGCCGCAAAGACGAGCTTTAGGAAGAAAGGGCTATTTATGCCACCATGGAGGAGAGCAG 775 |||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 713 AAGCTGCAAAGAAGAGCTTCAAGAAGAAAGGGCTATTTATGCCACCATGGAGGAGAGCAG 772 Query 776 AGTATTTGTTAACCAAATGGGTGTCTCAATATGATCGTACTAAGCAAACTCAAGGAGAAA 835 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 773 AGTATTTGTTAACCAAATGGGTGTCTCAATATGATCGTGCTAAGCAAACTCAAAGAGAAA 832 Query 836 CCAGTGGACAAGCTGGTG 853 |||||||| ||||||||| Sbjct 833 CCAGTGGAGAAGCTGGTG 850 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32099496114 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5