BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54550.1
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898394 jgi|Araly1|898394|Al_scaffold_0005_2360 1173 0.0
> Ahg898394 jgi|Araly1|898394|Al_scaffold_0005_2360
Length=864
Score = 1173 bits (635), Expect = 0.0
Identities = 786/858 (92%), Gaps = 13/858 (2%)
Strand=Plus/Plus
Query 1 ATGCCTTTCCGTTCCAAAGTCCAGCCTATCAACATCAATGGTGTAGGGATGAGACAAGCG 60
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGCCTTTCCGTTCTAAAGTCCAGCCTATCAACATCAATGGTGTAGCGATGAGACAAGCG 60
Query 61 CCGAGATCTCGACTGAAGCGGCTTTTTGAACGTCCGTTCTCTCTGAAGAACTTAGCCGGT 120
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 CCGAGATCACGACTGAAGCGGCTTTTTGAACGTCAGTTCTCTCTGAAGAACTTAGCCGGT 120
Query 121 GTAGATTCATCGCTTTCTAG-AGAAAATTCC-GAAGAAATCGAACCGAGCTCGGTCTGTT 178
|||||||||||||||||||| || || ||| |||||| ||||||| |||||||||||||
Sbjct 121 GTAGATTCATCGCTTTCTAGAAG-CAA-TCCGGAAGAATTCGAACCTAGCTCGGTCTGTT 178
Query 179 TGAGGAGGATGGTGCAGAACTATATCGAGGATCCAGACAGTGAGAAACAATCAAAGTGCA 238
||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 179 TGAGGAGGATGGTTCAGAACTATATCGAGGATCCAGACAGTGAGACACAATCACAGTGCA 238
Query 239 TTGTTCGTAACCGA-TGCAACTGCTTCAGTGGAAGTGGTACTGATAGCTCTGACGAGGAC 297
|||||||||||| | | ||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 239 TTGTTCGTAACC-ACTTCAACTGCTTCAGTGGAAGTGGCACTGATAGCTCCGACGA-G-- 294
Query 298 GACGAAGAATCTTCTTCTTCTAGAAGAGTTCTTCGAAGCCTCAAGAGTCTTTTACTTTGT 357
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 295 GACGAAGAATCTTCTTCTTCCAGCAGAGTTCTTCGAAGCCTCAAGAGTCTGTTACTTTGT 354
Query 358 GCGAACGTATCTGAGCGTGATCTCGAGACGAAAA-CAACCGAGATCGTTGAGAGAGAGGT 416
|| ||||| |||||| ||||||| ||||| |||| | | |||||| || ||||||||||
Sbjct 355 GCTAACGTCTCTGAGAGTGATCTTGAGAC-AAAAGCCAGCGAGATTGTCAAGAGAGAGGT 413
Query 417 TGAAGATAAGTCCAGACTGAAAAATGTTGTTGATGAACTGGTGGCTTTAGGCTATGATGC 476
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 414 TGAAGATAAGTCCAGACTGAAGAATGTTGCCGATGAACTGGTGGCTTTAGGCTATGATGC 473
Query 477 AGCAATATGCAAATCTCGCTGGGAGAAATCGAAAA-CGAAATCGTATTGTGTTCCCGCTG 535
||||||||||||||||||||||||||||| |||| |||||||||| ||||||| ||||
Sbjct 474 GGCAATATGCAAATCTCGCTGGGAGAAATC-AAAATTGAAATCGTATCGTGTTCCTGCTG 532
Query 536 GGGACTATGAGTATTTGGATGTTAACATTGGAGGAGAAAGAGTGCTCATCGACTTTGATT 595
||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 533 GGGACTATGAGTACTTGGATGTTAACATCGGAGGAGAAAGAGTGCTCATCGACATTGATT 592
Query 596 TCCAATCGAAGTTCGAAATTGCTAGATCGAGTGAGACTTACGAGTCGATATCGAAGACAT 655
||||||||||||| || ||||||| | | | |||||||||||||||||||||||||||
Sbjct 593 TCCAATCGAAGTTTGAGATTGCTAAACCAACCAAGACTTACGAGTCGATATCGAAGACAT 652
Query 656 TGCCTTACGTCTTTGTTGGACAAGTTGACAGGTTGACGAAGGTTGTGGTATTTTTGTCTA 715
||||| || | ||||||||||||||||| ||||| | ||| |||||||| ||| ||||||
Sbjct 653 TGCCTAACATTTTTGTTGGACAAGTTGAGAGGTTAAAGAAAGTTGTGGTGTTTGTGTCTA 712
Query 716 AAGCCGCAAAGACGAGCTTTAGGAAGAAAGGGCTATTTATGCCACCATGGAGGAGAGCAG 775
|||| ||||||| |||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 713 AAGCTGCAAAGAAGAGCTTCAAGAAGAAAGGGCTATTTATGCCACCATGGAGGAGAGCAG 772
Query 776 AGTATTTGTTAACCAAATGGGTGTCTCAATATGATCGTACTAAGCAAACTCAAGGAGAAA 835
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 773 AGTATTTGTTAACCAAATGGGTGTCTCAATATGATCGTGCTAAGCAAACTCAAAGAGAAA 832
Query 836 CCAGTGGACAAGCTGGTG 853
|||||||| |||||||||
Sbjct 833 CCAGTGGAGAAGCTGGTG 850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099496114
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5